{"id":"https://openalex.org/W2137786672","doi":"https://doi.org/10.1093/nar/28.1.37","title":"MIPS: a database for genomes and protein sequences","display_name":"MIPS: a database for genomes and protein sequences","publication_year":2000,"publication_date":"2000-01-01","ids":{"openalex":"https://openalex.org/W2137786672","doi":"https://doi.org/10.1093/nar/28.1.37","mag":"2137786672","pmid":"https://pubmed.ncbi.nlm.nih.gov/10592176"},"language":"en","primary_location":{"id":"doi:10.1093/nar/28.1.37","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/28.1.37","pdf_url":"https://academic.oup.com/nar/article-pdf/28/1/37/9895190/280037.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/28/1/37/9895190/280037.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086890458","display_name":"Hans\u2010Werner Mewes","orcid":"https://orcid.org/0000-0002-9713-6398"},"institutions":[{"id":"https://openalex.org/I4210150093","display_name":"Max Planck Institute of Biochemistry","ror":"https://ror.org/04py35477","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210150093"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"H. W. Mewes","raw_affiliation_strings":["GSF-Forschungszentrum f\u00fcr Umwelt und Gesundheit, Munich Information Center for Protein Sequences, am Max-Planck-Institut f\u00fcr Biochemie, Am Klopferspitz 18, D-82152 Martinsried, Germany. mewes@mips.embuct.org","Institute for Bioinformatics (MIPS), GSF National Research Center for Environment and Health, Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany"],"affiliations":[{"raw_affiliation_string":"GSF-Forschungszentrum f\u00fcr Umwelt und Gesundheit, Munich Information Center for Protein Sequences, am Max-Planck-Institut f\u00fcr Biochemie, Am Klopferspitz 18, D-82152 Martinsried, Germany. mewes@mips.embuct.org","institution_ids":["https://openalex.org/I4210150093"]},{"raw_affiliation_string":"Institute for Bioinformatics (MIPS), GSF National Research Center for Environment and Health, Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5086890458"],"corresponding_institution_ids":["https://openalex.org/I4210150093"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":37.8826,"has_fulltext":false,"cited_by_count":1278,"citation_normalized_percentile":{"value":0.99938675,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"28","issue":"1","first_page":"37","last_page":"40"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8111019134521484},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7756608724594116},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5919874906539917},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.5436645150184631},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.48484814167022705},{"id":"https://openalex.org/keywords/neurospora-crassa","display_name":"Neurospora crassa","score":0.4578406512737274},{"id":"https://openalex.org/keywords/expressed-sequence-tag","display_name":"Expressed sequence tag","score":0.4192348122596741},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39821696281433105},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3080708980560303},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.08495703339576721}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8111019134521484},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7756608724594116},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5919874906539917},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.5436645150184631},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.48484814167022705},{"id":"https://openalex.org/C2776739539","wikidata":"https://www.wikidata.org/wiki/Q133459","display_name":"Neurospora crassa","level":4,"score":0.4578406512737274},{"id":"https://openalex.org/C149034497","wikidata":"https://www.wikidata.org/wiki/Q1384835","display_name":"Expressed sequence tag","level":4,"score":0.4192348122596741},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39821696281433105},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3080708980560303},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.08495703339576721},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009492","descriptor_name":"Neurospora crassa","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009492","descriptor_name":"Neurospora crassa","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009492","descriptor_name":"Neurospora crassa","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/28.1.37","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/28.1.37","pdf_url":"https://academic.oup.com/nar/article-pdf/28/1/37/9895190/280037.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:10592176","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/10592176","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmid:9847138","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/9847138","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:154487","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/102494","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/28.1.37","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/28.1.37","pdf_url":"https://academic.oup.com/nar/article-pdf/28/1/37/9895190/280037.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.44999998807907104,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"},{"score":0.41999998688697815,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2137786672.pdf","grobid_xml":"https://content.openalex.org/works/W2137786672.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1550202981","https://openalex.org/W1569144507","https://openalex.org/W1630194357","https://openalex.org/W1666201796","https://openalex.org/W1974755744","https://openalex.org/W1985589565","https://openalex.org/W1986891966","https://openalex.org/W1990453950","https://openalex.org/W2028407739","https://openalex.org/W2038741882","https://openalex.org/W2041010633","https://openalex.org/W2049286082","https://openalex.org/W2056486650","https://openalex.org/W2066737015","https://openalex.org/W2069769495","https://openalex.org/W2088536629","https://openalex.org/W2091560728","https://openalex.org/W2117019496","https://openalex.org/W2117469502","https://openalex.org/W2124871329","https://openalex.org/W2133636765","https://openalex.org/W2139517791","https://openalex.org/W2153283265","https://openalex.org/W2171091522","https://openalex.org/W2256542114","https://openalex.org/W4213265720","https://openalex.org/W4248536238","https://openalex.org/W4322384960"],"related_works":["https://openalex.org/W2037436534","https://openalex.org/W1984311844","https://openalex.org/W1530540721","https://openalex.org/W2312531445","https://openalex.org/W1840549793","https://openalex.org/W2000116125","https://openalex.org/W1919391999","https://openalex.org/W2049699895","https://openalex.org/W2054741252","https://openalex.org/W2074450088"],"abstract_inverted_index":{"The":[0],"Munich":[1],"Information":[2],"Center":[3],"for":[4],"Protein":[5,134],"Sequences":[6],"(MIPS-GSF),":[7],"Martinsried":[8],"near":[9],"Munich,":[10],"Germany,":[11],"develops":[12],"and":[13,70,77,86,121,172],"maintains":[14],"genome":[15,98,110],"oriented":[16],"databases.":[17,41],"It":[18],"is":[19],"commonplace":[20],"that":[21],"the":[22,32,39,49,53,64,71,84,96,103,107,112,122,129,132,157,169,173],"amount":[23],"of":[24,34,56,61,67,74,89,95,114,124,131,153,165],"sequence":[25,40,75,126],"data":[26,50,127],"available":[27],"increases":[28],"rapidly,":[29],"but":[30],"not":[31],"capacity":[33],"qualified":[35],"manual":[36],"annotation":[37],"at":[38],"Therefore,":[42],"our":[43],"strategy":[44],"aims":[45],"to":[46,59,150],"cope":[47],"with":[48],"stream":[51],"by":[52],"comprehensive":[54,93],"application":[55],"analysis":[57,76,88],"tools":[58],"sequences":[60,69],"complete":[62],"genomes,":[63],"systematic":[65,85],"classification":[66],"protein":[68,125,166],"active":[72],"support":[73],"functional":[78],"genomics":[79],"projects.":[80],"This":[81],"report":[82],"describes":[83],"up-to-date":[87],"genomes":[90],"(PEDANT),":[91],"a":[92,100,151,163],"database":[94,101,113,164],"yeast":[97],"(MYGD),":[99],"reflecting":[102],"progress":[104],"in":[105,139],"sequencing":[106],"Arabidopsis":[108],"thaliana":[109],"(MATD),":[111],"assembled,":[115],"annotated":[116],"human":[117],"EST":[118],"clusters":[119],"(MEST),":[120],"collection":[123],"within":[128],"framework":[130],"PIR-International":[133],"Sequence":[135],"Database":[136],"(described":[137],"elsewhere":[138],"this":[140],"volume).":[141],"MIPS":[142],"provides":[143],"access":[144],"through":[145],"its":[146],"WWW":[147],"server":[148],"(http://www.mips.biochem.mpg.de)":[149],"spectrum":[152],"generic":[154],"databases,":[155],"including":[156],"above":[158],"mentioned":[159],"as":[160,162],"well":[161],"families":[167],"(PROTFAM),":[168],"MITOP":[170],"database,":[171],"all-against-all":[174],"FASTA":[175],"database.":[176]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":19},{"year":2018,"cited_by_count":18},{"year":2017,"cited_by_count":22},{"year":2016,"cited_by_count":31},{"year":2015,"cited_by_count":28},{"year":2014,"cited_by_count":39},{"year":2013,"cited_by_count":40},{"year":2012,"cited_by_count":51}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
