{"id":"https://openalex.org/W1981562546","doi":"https://doi.org/10.1093/nar/26.13.3279","title":"Complete sequence of the amphioxus (Branchiostoma lanceolatum) mitochondrial genome: relations to vertebrates","display_name":"Complete sequence of the amphioxus (Branchiostoma lanceolatum) mitochondrial genome: relations to vertebrates","publication_year":1998,"publication_date":"1998-07-01","ids":{"openalex":"https://openalex.org/W1981562546","doi":"https://doi.org/10.1093/nar/26.13.3279","mag":"1981562546","pmid":"https://pubmed.ncbi.nlm.nih.gov/9628930"},"language":"en","primary_location":{"id":"doi:10.1093/nar/26.13.3279","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/26.13.3279","pdf_url":"https://academic.oup.com/nar/article-pdf/26/13/3279/7073452/26-13-3279.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/26/13/3279/7073452/26-13-3279.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040081866","display_name":"Nathalie Spruyt","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210163910","display_name":"Institut de Biologie de Lille","ror":"https://ror.org/05gd4yq49","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I2279609970","https://openalex.org/I2800921988","https://openalex.org/I4210163910"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"N Spruyt","raw_affiliation_strings":["CNRS UMR 319, M\u00e9canismes du D\u00e9veloppement et de la Canc\u00e9risation, Institut de Biologie de Lille, Institut Pasteur, 1 rue Calmette, 59021 Lille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS UMR 319, M\u00e9canismes du D\u00e9veloppement et de la Canc\u00e9risation, Institut de Biologie de Lille, Institut Pasteur, 1 rue Calmette, 59021 Lille, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210163910"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5040081866"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210163910"],"apc_list":{"value":3992,"currency":"USD","value_usd":3992},"apc_paid":null,"fwci":2.1942,"has_fulltext":false,"cited_by_count":54,"citation_normalized_percentile":{"value":0.87997164,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":97},"biblio":{"volume":"26","issue":"13","first_page":"3279","last_page":"3285"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9349961280822754},{"id":"https://openalex.org/keywords/mitochondrial-dna","display_name":"Mitochondrial DNA","score":0.7727891206741333},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.6215792298316956},{"id":"https://openalex.org/keywords/transfer-rna","display_name":"Transfer RNA","score":0.6195299625396729},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.59676593542099},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5706192255020142},{"id":"https://openalex.org/keywords/start-codon","display_name":"Start codon","score":0.5463134050369263},{"id":"https://openalex.org/keywords/stop-codon","display_name":"Stop codon","score":0.47550874948501587},{"id":"https://openalex.org/keywords/ribosomal-rna","display_name":"Ribosomal RNA","score":0.44929471611976624},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3962705433368683},{"id":"https://openalex.org/keywords/nucleotide","display_name":"Nucleotide","score":0.16068419814109802},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.11573076248168945}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9349961280822754},{"id":"https://openalex.org/C24586158","wikidata":"https://www.wikidata.org/wiki/Q27075","display_name":"Mitochondrial DNA","level":3,"score":0.7727891206741333},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6215792298316956},{"id":"https://openalex.org/C153957851","wikidata":"https://www.wikidata.org/wiki/Q201448","display_name":"Transfer RNA","level":4,"score":0.6195299625396729},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.59676593542099},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5706192255020142},{"id":"https://openalex.org/C176990463","wikidata":"https://www.wikidata.org/wiki/Q1854186","display_name":"Start codon","level":4,"score":0.5463134050369263},{"id":"https://openalex.org/C20580545","wikidata":"https://www.wikidata.org/wiki/Q28354","display_name":"Stop codon","level":3,"score":0.47550874948501587},{"id":"https://openalex.org/C67905577","wikidata":"https://www.wikidata.org/wiki/Q215980","display_name":"Ribosomal RNA","level":3,"score":0.44929471611976624},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3962705433368683},{"id":"https://openalex.org/C512185932","wikidata":"https://www.wikidata.org/wiki/Q28745","display_name":"Nucleotide","level":3,"score":0.16068419814109802},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.11573076248168945}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002816","descriptor_name":"Chordata, Nonvertebrate","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002816","descriptor_name":"Chordata, Nonvertebrate","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002816","descriptor_name":"Chordata, Nonvertebrate","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004272","descriptor_name":"DNA, Mitochondrial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004272","descriptor_name":"DNA, Mitochondrial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004272","descriptor_name":"DNA, Mitochondrial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014714","descriptor_name":"Vertebrates","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014714","descriptor_name":"Vertebrates","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014714","descriptor_name":"Vertebrates","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/26.13.3279","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/26.13.3279","pdf_url":"https://academic.oup.com/nar/article-pdf/26/13/3279/7073452/26-13-3279.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:9628930","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/9628930","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:197367","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/147690","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:147690","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/147690","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:nar:26/13/3279","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/26/13/3279","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/nar/26.13.3279","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/26.13.3279","pdf_url":"https://academic.oup.com/nar/article-pdf/26/13/3279/7073452/26-13-3279.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life below water","id":"https://metadata.un.org/sdg/14","score":0.8999999761581421}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W1981562546.pdf"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W79350981","https://openalex.org/W1502867115","https://openalex.org/W1509147620","https://openalex.org/W1541027473","https://openalex.org/W1597843181","https://openalex.org/W1965663262","https://openalex.org/W1970461962","https://openalex.org/W1970538452","https://openalex.org/W1971999012","https://openalex.org/W1978336924","https://openalex.org/W1989841259","https://openalex.org/W1999573107","https://openalex.org/W2006556423","https://openalex.org/W2033128097","https://openalex.org/W2038890085","https://openalex.org/W2048678116","https://openalex.org/W2051565489","https://openalex.org/W2058414347","https://openalex.org/W2060915061","https://openalex.org/W2069724132","https://openalex.org/W2073684294","https://openalex.org/W2077309447","https://openalex.org/W2079249519","https://openalex.org/W2079700493","https://openalex.org/W2092371038","https://openalex.org/W2093277436","https://openalex.org/W2105834299","https://openalex.org/W2108494054","https://openalex.org/W2109291482","https://openalex.org/W2109894071","https://openalex.org/W2122986506","https://openalex.org/W2129395601","https://openalex.org/W2144634347","https://openalex.org/W2163135539","https://openalex.org/W2171867584"],"related_works":["https://openalex.org/W2127112464","https://openalex.org/W2082497884","https://openalex.org/W2100776225","https://openalex.org/W2162549018","https://openalex.org/W1996864294","https://openalex.org/W1981879843","https://openalex.org/W2106654613","https://openalex.org/W1970054290","https://openalex.org/W1998747977","https://openalex.org/W2912466504"],"abstract_inverted_index":{"The":[0,58,95],"complete":[1],"nucleotide":[2],"sequence":[3,52],"of":[4,8,25,29,54,60,67,76,85,99,104,106,134,167],"the":[5,9,26,30,35,61,68,77,83,86,93,100,109,127,131,135,147,156,164],"mitochondrial":[6,17,96],"DNA":[7],"amphioxus":[10,101,151],"Branchiostoma":[11],"lanceolatum":[12],"has":[13],"been":[14],"determined.":[15],"This":[16],"genome":[18,41],"is":[19,72,102,112,137],"small":[20],"(15":[21],"076":[22],"bp)":[23,49],"because":[24],"short":[27,45],"size":[28],"two":[31,69],"rRNA":[32,70],"genes":[33,88],"and":[34,117,152,154],"tRNA":[36,87],"genes.":[37],"In":[38],"addition,":[39],"this":[40],"contains":[42],"a":[43,55,115,120],"very":[44],"non-coding":[46],"region":[47],"(57":[48],"with":[50],"no":[51],"reminiscent":[53,103],"control":[56],"region.":[57],"organisation":[59],"coding":[62],"genes,":[63,71],"as":[64,66,114,119,123,163],"well":[65],"identical":[73],"to":[74,92],"that":[75,105,158],"sea":[78],"lamprey.":[79,94],"Some":[80],"differences":[81],"in":[82,124],"repartition":[84],"occur":[89],"when":[90],"compared":[91],"codon":[97,111,122,136],"usage":[98],"urochordates":[107],"since":[108],"AGA":[110],"read":[113],"glycine":[116],"not":[118],"stop":[121],"vertebrates.":[125,168],"Moreover,":[126],"base":[128],"composition":[129],"at":[130],"wobble":[132],"positions":[133],"strongly":[138],"biased":[139],"toward":[140],"guanine.":[141],"Altogether,":[142],"these":[143],"data":[144],"clearly":[145],"emphasise":[146],"close":[148],"relationships":[149],"between":[150],"vertebrates,":[153],"reinforce":[155],"notion":[157],"prochordates":[159],"may":[160],"be":[161],"viewed":[162],"brother":[165],"group":[166]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2014,"cited_by_count":2}],"updated_date":"2026-09-09T07:26:56.047234","created_date":"2025-10-10T00:00:00"}