{"id":"https://openalex.org/W2124409312","doi":"https://doi.org/10.1093/nar/26.1.80","title":"AtDB, the Arabidopsis thaliana database, and graphical-web-display of progress by the Arabidopsis Genome Initiative","display_name":"AtDB, the Arabidopsis thaliana database, and graphical-web-display of progress by the Arabidopsis Genome Initiative","publication_year":1998,"publication_date":"1998-01-01","ids":{"openalex":"https://openalex.org/W2124409312","doi":"https://doi.org/10.1093/nar/26.1.80","mag":"2124409312","pmid":"https://pubmed.ncbi.nlm.nih.gov/9399805"},"language":"en","primary_location":{"id":"doi:10.1093/nar/26.1.80","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/26.1.80","pdf_url":"https://academic.oup.com/nar/article-pdf/26/1/80/7049380/26-1-80.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/26/1/80/7049380/26-1-80.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020054798","display_name":"D. Flanders","orcid":"https://orcid.org/0000-0002-6158-9264"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"D. Flanders","raw_affiliation_strings":["Department of Genetics, School of Medicine, Stanford University, Stanford, CA 94305-5120, USA","Department of Genetics, School of Medicine, Stanford University, Stanford, CA 94305\u20105120, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, School of Medicine, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Genetics, School of Medicine, Stanford University, Stanford, CA 94305\u20105120, USA","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5020054798"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":1.5583,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.83503629,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"26","issue":"1","first_page":"80","last_page":"84"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.9786999821662903,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/arabidopsis","display_name":"Arabidopsis","score":0.843863844871521},{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.7131913304328918},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6361363530158997},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6010569334030151},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.5799973011016846},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4776676595211029},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45583322644233704},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.41897642612457275},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4171755015850067},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3419998288154602},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.30395370721817017},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2773900032043457},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19598239660263062}],"concepts":[{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.843863844871521},{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.7131913304328918},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6361363530158997},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6010569334030151},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.5799973011016846},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4776676595211029},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45583322644233704},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.41897642612457275},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4171755015850067},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3419998288154602},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.30395370721817017},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2773900032043457},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19598239660263062},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003626","descriptor_name":"Data Display","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003626","descriptor_name":"Data Display","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003626","descriptor_name":"Data Display","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/26.1.80","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/26.1.80","pdf_url":"https://academic.oup.com/nar/article-pdf/26/1/80/7049380/26-1-80.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:9399805","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/9399805","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:170098","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC147237","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:147237","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/147237","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/26.1.80","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/26.1.80","pdf_url":"https://academic.oup.com/nar/article-pdf/26/1/80/7049380/26-1-80.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6000000238418579,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G2079241515","display_name":"Genomic Database for the Flowering Plant Arabidopsis        thaliana","funder_award_id":"9503776","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8649604995","display_name":"Genomic Database for the Flowering Plant Arabidopsis        thaliana","funder_award_id":"9714160","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320333063","display_name":"Stanford Bio-X","ror":"https://ror.org/00f54p054"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2124409312.pdf","grobid_xml":"https://content.openalex.org/works/W2124409312.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W2015292449","https://openalex.org/W2055043387","https://openalex.org/W2113419253","https://openalex.org/W2136916749","https://openalex.org/W2162891889","https://openalex.org/W6633311800"],"related_works":["https://openalex.org/W1594012662","https://openalex.org/W2106134872","https://openalex.org/W2269421989","https://openalex.org/W3147624048","https://openalex.org/W2006745274","https://openalex.org/W2355042192","https://openalex.org/W2391996571","https://openalex.org/W2372627703","https://openalex.org/W1987749596","https://openalex.org/W4302762970"],"abstract_inverted_index":{"AtDB,":[0],"the":[1,14,22,44,81,100,119,136,148],"Arabidopsis":[2,57,102,108,139],"thaliana":[3,20],"Database,":[4],"has":[5],"a":[6,90],"primary":[7],"role":[8],"to":[9,13,71,121,135],"provide":[10,86],"public":[11],"access":[12,134],"collected":[15],"genomic":[16,93,103],"information":[17,42,60,69,163],"for":[18,164,173],"A.":[19],"via":[21],"World":[23],"Wide":[24],"Web":[25],"(URL:":[26],"http://genome-www.stanford.":[27],"edu/":[28],").":[29],"AtDB":[30],"presents":[31],"interactive":[32],"physical":[33],"and":[34,46,67,143,155,159],"genetics":[35],"maps":[36],"that":[37,85,117,167],"are":[38,75],"hyperlinked":[39,115,145],"with":[40],"detailed":[41,122],"about":[43],"clones":[45],"markers":[47],"placed":[48],"on":[49,56,61],"these":[50],"maps.":[51],"A":[52,124],"large":[53],"literature":[54],"collection":[55],",":[58],"contact":[59],"researchers":[62],"worldwide,":[63],"laboratory":[64],"method":[65],"manuals":[66],"other":[68],"useful":[70],"plant":[72],"molecular":[73],"biologists":[74],"also":[76,129],"provided.":[77],"This":[78,131],"paper":[79],"discusses":[80],"database-driven":[82],"clickable":[83],"displays":[84],"easy":[87],"navigation":[88],"within":[89,166],"variety":[91],"of":[92,99,138,153],"maps,":[94],"including":[95],"those":[96],"summarizing":[97,147],"progress":[98],"international":[101],"sequencing":[104],"effort,":[105],"AGI":[106],"(the":[107],"Genome":[109],"Initiative).":[110],"The":[111,151],"interface":[112],"uses":[113],"client-side":[114],"GIF-images":[116],"direct":[118],"user":[120],"database-information.":[123],"new":[125],"BLAST":[126],"service":[127],"is":[128,169],"described.":[130],"gives":[132],"users":[133],"thousands":[137],"BAC":[140],"clone":[141],"end-sequences":[142],"includes":[144],"images":[146],"search":[149],"results.":[150],"linking":[152],"genetic":[154],"physically":[156],"mapped":[157],"regions":[158],"their":[160],"sequence":[161],"into":[162],"loci":[165],"region":[168],"an":[170],"ongoing":[171],"goal":[172],"this":[174],"project.":[175]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}