{"id":"https://openalex.org/W3084317739","doi":"https://doi.org/10.1093/jigpal/jzaa034","title":"Towards real-time DNA biometrics using GPU-accelerated processing","display_name":"Towards real-time DNA biometrics using GPU-accelerated processing","publication_year":2020,"publication_date":"2020-08-06","ids":{"openalex":"https://openalex.org/W3084317739","doi":"https://doi.org/10.1093/jigpal/jzaa034","mag":"3084317739"},"language":"en","primary_location":{"id":"doi:10.1093/jigpal/jzaa034","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jigpal/jzaa034","pdf_url":null,"source":{"id":"https://openalex.org/S2734381524","display_name":"Logic Journal of IGPL","issn_l":"1367-0751","issn":["1367-0751","1368-9894"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Logic Journal of the IGPL","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047703969","display_name":"Mario Reja","orcid":null},"institutions":[{"id":"https://openalex.org/I3121153395","display_name":"West University of Timi\u015foara","ror":"https://ror.org/0583a0t97","country_code":"RO","type":"education","lineage":["https://openalex.org/I3121153395"]}],"countries":["RO"],"is_corresponding":true,"raw_author_name":"Mario Reja","raw_affiliation_strings":["Faculty of Mathematics and Informatics, West University of Timisoara, Timis county, Timisoara 300223, Romania"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Informatics, West University of Timisoara, Timis county, Timisoara 300223, Romania","institution_ids":["https://openalex.org/I3121153395"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077316382","display_name":"Ciprian Pungil\u0103","orcid":"https://orcid.org/0000-0002-8732-1645"},"institutions":[{"id":"https://openalex.org/I3121153395","display_name":"West University of Timi\u015foara","ror":"https://ror.org/0583a0t97","country_code":"RO","type":"education","lineage":["https://openalex.org/I3121153395"]}],"countries":["RO"],"is_corresponding":false,"raw_author_name":"Ciprian Pungila","raw_affiliation_strings":["Faculty of Mathematics and Informatics, West University of Timisoara, Timis county, Timisoara 300223, Romania"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Informatics, West University of Timisoara, Timis county, Timisoara 300223, Romania","institution_ids":["https://openalex.org/I3121153395"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032506838","display_name":"Viorel Negru","orcid":"https://orcid.org/0000-0001-7133-572X"},"institutions":[{"id":"https://openalex.org/I3121153395","display_name":"West University of Timi\u015foara","ror":"https://ror.org/0583a0t97","country_code":"RO","type":"education","lineage":["https://openalex.org/I3121153395"]}],"countries":["RO"],"is_corresponding":false,"raw_author_name":"Viorel Negru","raw_affiliation_strings":["Faculty of Mathematics and Informatics, West University of Timisoara, Timis county, Timisoara 300223, Romania"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Informatics, West University of Timisoara, Timis county, Timisoara 300223, Romania","institution_ids":["https://openalex.org/I3121153395"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5047703969"],"corresponding_institution_ids":["https://openalex.org/I3121153395"],"apc_list":{"value":4151,"currency":"USD","value_usd":4151},"apc_paid":null,"fwci":0.2608,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.63591752,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"29","issue":"6","first_page":"906","last_page":"924"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8371380567550659},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6794979572296143},{"id":"https://openalex.org/keywords/massively-parallel","display_name":"Massively parallel","score":0.6382874250411987},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.6231520175933838},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.3950117826461792},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24560096859931946},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.10546407103538513}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8371380567550659},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6794979572296143},{"id":"https://openalex.org/C190475519","wikidata":"https://www.wikidata.org/wiki/Q544384","display_name":"Massively parallel","level":2,"score":0.6382874250411987},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.6231520175933838},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.3950117826461792},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24560096859931946},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.10546407103538513}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1093/jigpal/jzaa034","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jigpal/jzaa034","pdf_url":null,"source":{"id":"https://openalex.org/S2734381524","display_name":"Logic Journal of IGPL","issn_l":"1367-0751","issn":["1367-0751","1368-9894"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Logic Journal of the IGPL","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5099999904632568,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G2073171022","display_name":null,"funder_award_id":"28PFE","funder_id":"https://openalex.org/F4320324070","funder_display_name":"Ministry of Education and Research, Romania"}],"funders":[{"id":"https://openalex.org/F4320324070","display_name":"Ministry of Education and Research, Romania","ror":"https://ror.org/00dh5gw98"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W108057607","https://openalex.org/W599934088","https://openalex.org/W645173616","https://openalex.org/W1577337656","https://openalex.org/W1950977525","https://openalex.org/W1967611056","https://openalex.org/W1985108724","https://openalex.org/W2000335122","https://openalex.org/W2074373096","https://openalex.org/W2097554916","https://openalex.org/W2099964107","https://openalex.org/W2102733233","https://openalex.org/W2104846587","https://openalex.org/W2110134128","https://openalex.org/W2504466427","https://openalex.org/W2515256648","https://openalex.org/W2595507424","https://openalex.org/W2605153318","https://openalex.org/W2612812586","https://openalex.org/W2745824628","https://openalex.org/W2963482904","https://openalex.org/W4210327135","https://openalex.org/W4210951666","https://openalex.org/W4239158730","https://openalex.org/W4250791217","https://openalex.org/W6683050587","https://openalex.org/W6684642704","https://openalex.org/W6713023880","https://openalex.org/W6736483456"],"related_works":["https://openalex.org/W2023839151","https://openalex.org/W1774183074","https://openalex.org/W2057488824","https://openalex.org/W2334687145","https://openalex.org/W2178011914","https://openalex.org/W4235962491","https://openalex.org/W2061778832","https://openalex.org/W1513001507","https://openalex.org/W2257153718","https://openalex.org/W3134702077"],"abstract_inverted_index":{"Abstract":[0],"Decoding":[1],"the":[2,6,40,63,89,93],"human":[3],"genome":[4],"in":[5,69],"past":[7],"decades":[8],"has":[9],"brought":[10],"into":[11],"focus":[12],"a":[13],"computationally":[14],"intensive":[15],"operation":[16],"through":[17],"DNA":[18,82,106],"profiling.":[19],"The":[20],"typical":[21],"search":[22],"space":[23],"for":[24],"these":[25],"kinds":[26],"of":[27,58,81,92],"problems":[28],"is":[29],"extremely":[30],"large":[31],"and":[32,36,51,84],"requires":[33],"specialized":[34],"hardware":[35],"algorithms":[37],"to":[38,54],"perform":[39],"necessary":[41],"sequence":[42],"analysis.":[43],"In":[44],"this":[45],"paper,":[46],"we":[47,100],"propose":[48],"an":[49],"innovative":[50],"scalable":[52],"approach":[53,75],"exact":[55],"multi-pattern":[56],"matching":[57],"nucleotide":[59],"sequences":[60],"by":[61],"harnessing":[62],"massively":[64],"parallel":[65],"computing":[66],"power":[67],"found":[68],"commodity":[70],"graphical":[71],"processing":[72],"units.":[73],"Our":[74],"places":[76],"careful":[77],"consideration":[78],"on":[79],"preprocessing":[80],"datasets":[83],"runtime":[85],"performance,":[86],"while":[87],"exploiting":[88],"full":[90],"capabilities":[91],"heterogeneous":[94],"platform":[95],"it":[96],"runs":[97],"on.":[98],"Finally,":[99],"evaluate":[101],"our":[102],"models":[103],"against":[104],"real-world":[105],"sequences.":[107]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
