{"id":"https://openalex.org/W2993873509","doi":"https://doi.org/10.1093/jamia/ocz200","title":"Deep learning in clinical natural language processing: a methodical review","display_name":"Deep learning in clinical natural language processing: a methodical review","publication_year":2019,"publication_date":"2019-11-09","ids":{"openalex":"https://openalex.org/W2993873509","doi":"https://doi.org/10.1093/jamia/ocz200","mag":"2993873509","pmid":"https://pubmed.ncbi.nlm.nih.gov/31794016"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocz200","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocz200","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7025365","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038428039","display_name":"Stephen Wu","orcid":"https://orcid.org/0000-0002-0031-2560"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen Wu","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046709245","display_name":"Kirk Roberts","orcid":"https://orcid.org/0000-0001-6525-5213"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kirk Roberts","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":"https://orcid.org/0000-0001-6525-5213","affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032489574","display_name":"Surabhi Datta","orcid":"https://orcid.org/0000-0002-5634-2005"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Surabhi Datta","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079546302","display_name":"Jingcheng Du","orcid":"https://orcid.org/0000-0002-0322-4566"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jingcheng Du","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014646800","display_name":"Zongcheng Ji","orcid":"https://orcid.org/0000-0002-4963-8422"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zongcheng Ji","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011255280","display_name":"Yuqi Si","orcid":"https://orcid.org/0000-0002-8123-8947"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuqi Si","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055267862","display_name":"Sarvesh Soni","orcid":"https://orcid.org/0000-0003-1704-1039"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sarvesh Soni","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100417385","display_name":"Qiong Wang","orcid":"https://orcid.org/0000-0002-7225-5235"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qiong Wang","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075191048","display_name":"Qiang Wei","orcid":"https://orcid.org/0000-0002-8665-0201"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qiang Wei","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":"https://orcid.org/0000-0002-8665-0201","affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100666554","display_name":"Yang Xiang","orcid":"https://orcid.org/0000-0001-5252-0831"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yang Xiang","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055778766","display_name":"Bo Zhao","orcid":"https://orcid.org/0000-0002-3799-9183"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bo Zhao","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084072550","display_name":"Hua Xu","orcid":"https://orcid.org/0000-0002-5274-4672"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hua Xu","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":29.7913,"has_fulltext":false,"cited_by_count":487,"citation_normalized_percentile":{"value":0.99723594,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"27","issue":"3","first_page":"457","last_page":"470"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.430400013923645,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.430400013923645,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.25870001316070557,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.10530000180006027,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.8128609657287598},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.733321487903595},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6455748081207275},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.6264569759368896},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5794989466667175},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.48651188611984253},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.4720248281955719},{"id":"https://openalex.org/keywords/word2vec","display_name":"Word2vec","score":0.4524078667163849},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.45005369186401367},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3833046853542328},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37533456087112427}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.8128609657287598},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.733321487903595},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6455748081207275},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.6264569759368896},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5794989466667175},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.48651188611984253},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.4720248281955719},{"id":"https://openalex.org/C2776461190","wikidata":"https://www.wikidata.org/wiki/Q22673982","display_name":"Word2vec","level":3,"score":0.4524078667163849},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.45005369186401367},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3833046853542328},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37533456087112427},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015706","descriptor_name":"Bibliometrics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015706","descriptor_name":"Bibliometrics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015706","descriptor_name":"Bibliometrics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/jamia/ocz200","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocz200","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:31794016","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31794016","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:digitalcommons.library.tmc.edu:uthshis_docs-1097","is_oa":false,"landing_page_url":"https://digitalcommons.library.tmc.edu/uthshis_docs/98","pdf_url":null,"source":{"id":"https://openalex.org/S4377196655","display_name":"Digital Commons-TMC (Texas Medical Center)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1337852284","host_organization_name":"Texas Medical Center","host_organization_lineage":["https://openalex.org/I1337852284"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal Articles","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7025365","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7025365","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:7025365","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7025365","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.8299999833106995,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G4567391001","display_name":null,"funder_award_id":"R00LM012104","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6071359385","display_name":null,"funder_award_id":"U01TR002062","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":90,"referenced_works":["https://openalex.org/W67548169","https://openalex.org/W1579185617","https://openalex.org/W2048060485","https://openalex.org/W2067833766","https://openalex.org/W2079735306","https://openalex.org/W2112796928","https://openalex.org/W2158899491","https://openalex.org/W2250962271","https://openalex.org/W2265846598","https://openalex.org/W2367952659","https://openalex.org/W2467995757","https://openalex.org/W2573536041","https://openalex.org/W2604748391","https://openalex.org/W2621075239","https://openalex.org/W2625625371","https://openalex.org/W2749701213","https://openalex.org/W2765755636","https://openalex.org/W2768377508","https://openalex.org/W2768488789","https://openalex.org/W2769783090","https://openalex.org/W2772121968","https://openalex.org/W2786945200","https://openalex.org/W2789816182","https://openalex.org/W2797206252","https://openalex.org/W2801562942","https://openalex.org/W2802736684","https://openalex.org/W2805089815","https://openalex.org/W2805183640","https://openalex.org/W2805211535","https://openalex.org/W2806332266","https://openalex.org/W2808129629","https://openalex.org/W2810633754","https://openalex.org/W2854807801","https://openalex.org/W2884705011","https://openalex.org/W2886093373","https://openalex.org/W2886493354","https://openalex.org/W2886646161","https://openalex.org/W2886875078","https://openalex.org/W2888775708","https://openalex.org/W2890827016","https://openalex.org/W2898155085","https://openalex.org/W2899011686","https://openalex.org/W2900069888","https://openalex.org/W2900223378","https://openalex.org/W2905810301","https://openalex.org/W2908880646","https://openalex.org/W2909597216","https://openalex.org/W2910485119","https://openalex.org/W2911489562","https://openalex.org/W2912324667","https://openalex.org/W2913997948","https://openalex.org/W2917157846","https://openalex.org/W2931252866","https://openalex.org/W2933254171","https://openalex.org/W2936273339","https://openalex.org/W2938409691","https://openalex.org/W2938598139","https://openalex.org/W2938618849","https://openalex.org/W2940427621","https://openalex.org/W2940685834","https://openalex.org/W2942217618","https://openalex.org/W2942354996","https://openalex.org/W2951934944","https://openalex.org/W2952230511","https://openalex.org/W2955483668","https://openalex.org/W2963154225","https://openalex.org/W2963180158","https://openalex.org/W2963571188","https://openalex.org/W2966351171","https://openalex.org/W3102123817","https://openalex.org/W3102251128","https://openalex.org/W3104523752","https://openalex.org/W3152641086","https://openalex.org/W4235647441","https://openalex.org/W4293262146","https://openalex.org/W6602730467","https://openalex.org/W6683738474","https://openalex.org/W6693505360","https://openalex.org/W6719402147","https://openalex.org/W6745327207","https://openalex.org/W6745652120","https://openalex.org/W6748195062","https://openalex.org/W6751370899","https://openalex.org/W6751455555","https://openalex.org/W6753431797","https://openalex.org/W6753808756","https://openalex.org/W6753933335","https://openalex.org/W6754136672","https://openalex.org/W6761856286","https://openalex.org/W6762199980"],"related_works":["https://openalex.org/W4205454697","https://openalex.org/W2621151902","https://openalex.org/W2334378031","https://openalex.org/W842810586","https://openalex.org/W2916255597","https://openalex.org/W4319940250","https://openalex.org/W3095980030","https://openalex.org/W2352298027","https://openalex.org/W2092919065","https://openalex.org/W4379379356"],"abstract_inverted_index":{"OBJECTIVE:":[0],"This":[1,241],"article":[2],"methodically":[3],"reviews":[4],"the":[5,17,44,52,105,109,157,161,166,189,200,217,245],"literature":[6],"on":[7,77],"deep":[8,176,225],"learning":[9,177,229],"(DL)":[10],"for":[11,46,54,58,181,206],"natural":[12],"language":[13,221],"processing":[14],"(NLP)":[15],"in":[16,66,85,156,188,250],"clinical":[18,86,222,235],"domain,":[19],"providing":[20],"quantitative":[21],"analysis":[22,171],"to":[23,63],"answer":[24],"3":[25],"research":[26],"questions":[27],"concerning":[28],"methods,":[29],"scope,":[30],"and":[31,51,100,119,134,184,237,247],"context":[32],"of":[33,113,131,149,175,185,194,202,219],"current":[34],"research.":[35],"MATERIALS":[36],"AND":[37],"METHODS:":[38],"We":[39],"searched":[40],"MEDLINE,":[41],"EMBASE,":[42],"Scopus,":[43],"Association":[45,53],"Computing":[47],"Machinery":[48],"Digital":[49],"Library,":[50],"Computational":[55],"Linguistics":[56],"Anthology":[57],"articles":[59],"using":[60],"DL-based":[61,186],"approaches":[62],"NLP":[64,87,158,182,187,223,236],"problems":[65],"electronic":[67],"health":[68],"records.":[69],"After":[70],"screening":[71],"1,737":[72],"articles,":[73],"we":[74],"collected":[75],"data":[76],"25":[78],"variables":[79],"across":[80],"212":[81],"papers.":[82],"RESULTS:":[83],"DL":[84],"publications":[88],"more":[89],"than":[90],"doubled":[91],"each":[92],"year,":[93],"through":[94],"2018.":[95],"Recurrent":[96],"neural":[97,204],"networks":[98,205],"(60.8%)":[99],"word2vec":[101],"embeddings":[102],"(74.1%)":[103],"were":[104,122,139,146,155,197,213],"most":[106,167],"popular":[107,246],"methods;":[108],"information":[110],"extraction":[111,121],"tasks":[112],"text":[114],"classification,":[115],"named":[116,208],"entity":[117,209],"recognition,":[118],"relation":[120],"dominant":[123],"(89.2%).":[124],"However,":[125],"there":[126],"was":[127,165],"a":[128,179],"\"long":[129],"tail\"":[130],"other":[132],"methods":[133,148],"specific":[135],"tasks.":[136],"Most":[137],"contributions":[138],"methodological":[140],"variants":[141],"or":[142],"applications,":[143],"but":[144,160],"20.8%":[145],"new":[147],"some":[150],"kind.":[151],"The":[152],"earliest":[153],"adopters":[154],"community,":[159],"medical":[162,190],"informatics":[163],"community":[164],"prolific.":[168],"DISCUSSION:":[169],"Our":[170],"shows":[172],"growing":[173,239],"acceptance":[174],"as":[178],"baseline":[180],"research,":[183],"community.":[191],"A":[192],"number":[193],"common":[195],"associations":[196],"substantiated":[198],"(eg,":[199,216],"preference":[201],"recurrent":[203],"sequence-labeling":[207],"recognition),":[210],"while":[211],"others":[212],"surprisingly":[214],"nuanced":[215],"scarcity":[218],"French":[220],"with":[224],"learning).":[226],"CONCLUSION:":[227],"Deep":[228],"has":[230],"not":[231],"yet":[232],"fully":[233],"penetrated":[234],"is":[238],"rapidly.":[240],"review":[242],"highlighted":[243],"both":[244],"unique":[248],"trends":[249],"this":[251],"active":[252],"field.":[253]},"counts_by_year":[{"year":2026,"cited_by_count":32},{"year":2025,"cited_by_count":83},{"year":2024,"cited_by_count":77},{"year":2023,"cited_by_count":91},{"year":2022,"cited_by_count":90},{"year":2021,"cited_by_count":75},{"year":2020,"cited_by_count":38},{"year":2019,"cited_by_count":1}],"updated_date":"2026-06-17T08:01:34.144755","created_date":"2025-10-10T00:00:00"}
