{"id":"https://openalex.org/W2946871011","doi":"https://doi.org/10.1093/jamia/ocz068","title":"Development and application of a high throughput natural language processing architecture to convert all clinical documents in a clinical data warehouse into standardized medical vocabularies","display_name":"Development and application of a high throughput natural language processing architecture to convert all clinical documents in a clinical data warehouse into standardized medical vocabularies","publication_year":2019,"publication_date":"2019-04-24","ids":{"openalex":"https://openalex.org/W2946871011","doi":"https://doi.org/10.1093/jamia/ocz068","mag":"2946871011","pmid":"https://pubmed.ncbi.nlm.nih.gov/31145455"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocz068","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocz068","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7647210","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063499248","display_name":"Majid Afshar","orcid":"https://orcid.org/0000-0002-6368-4652"},"institutions":[{"id":"https://openalex.org/I1925986","display_name":"Loyola University Chicago","ror":"https://ror.org/04b6x2g63","country_code":"US","type":"education","lineage":["https://openalex.org/I1925986"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Majid Afshar","raw_affiliation_strings":["Center for Health Outcomes and Informatics Research, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA","Department of Public Health Sciences, Stritch School of Medicine, Loyola University Chicago, Maywood, Illinois, USA"],"raw_orcid":"https://orcid.org/0000-0002-6368-4652","affiliations":[{"raw_affiliation_string":"Center for Health Outcomes and Informatics Research, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA","institution_ids":["https://openalex.org/I1925986"]},{"raw_affiliation_string":"Department of Public Health Sciences, Stritch School of Medicine, Loyola University Chicago, Maywood, Illinois, USA","institution_ids":["https://openalex.org/I1925986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054031099","display_name":"Dmitriy Dligach","orcid":"https://orcid.org/0000-0002-2585-2707"},"institutions":[{"id":"https://openalex.org/I1925986","display_name":"Loyola University Chicago","ror":"https://ror.org/04b6x2g63","country_code":"US","type":"education","lineage":["https://openalex.org/I1925986"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dmitriy Dligach","raw_affiliation_strings":["Center for Health Outcomes and Informatics Research, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA","Department of Computer Science, Loyola University, Chicago, Illinois, USA","Department of Public Health Sciences, Stritch School of Medicine, Loyola University Chicago, Maywood, Illinois, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Health Outcomes and Informatics Research, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA","institution_ids":["https://openalex.org/I1925986"]},{"raw_affiliation_string":"Department of Computer Science, Loyola University, Chicago, Illinois, USA","institution_ids":["https://openalex.org/I1925986"]},{"raw_affiliation_string":"Department of Public Health Sciences, Stritch School of Medicine, Loyola University Chicago, Maywood, Illinois, USA","institution_ids":["https://openalex.org/I1925986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083306075","display_name":"Brihat Sharma","orcid":"https://orcid.org/0000-0003-0417-4553"},"institutions":[{"id":"https://openalex.org/I1925986","display_name":"Loyola University Chicago","ror":"https://ror.org/04b6x2g63","country_code":"US","type":"education","lineage":["https://openalex.org/I1925986"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brihat Sharma","raw_affiliation_strings":["Department of Computer Science, Loyola University, Chicago, Illinois, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Loyola University, Chicago, Illinois, USA","institution_ids":["https://openalex.org/I1925986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040249922","display_name":"Xiaoyuan Cai","orcid":null},"institutions":[{"id":"https://openalex.org/I1925986","display_name":"Loyola University Chicago","ror":"https://ror.org/04b6x2g63","country_code":"US","type":"education","lineage":["https://openalex.org/I1925986"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaoyuan Cai","raw_affiliation_strings":["Informatics and Systems Development, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informatics and Systems Development, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA","institution_ids":["https://openalex.org/I1925986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088272255","display_name":"Jason Boyda","orcid":null},"institutions":[{"id":"https://openalex.org/I1925986","display_name":"Loyola University Chicago","ror":"https://ror.org/04b6x2g63","country_code":"US","type":"education","lineage":["https://openalex.org/I1925986"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason Boyda","raw_affiliation_strings":["Informatics and Systems Development, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informatics and Systems Development, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA","institution_ids":["https://openalex.org/I1925986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050731237","display_name":"Steven Birch","orcid":"https://orcid.org/0000-0001-8610-7690"},"institutions":[{"id":"https://openalex.org/I1925986","display_name":"Loyola University Chicago","ror":"https://ror.org/04b6x2g63","country_code":"US","type":"education","lineage":["https://openalex.org/I1925986"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven Birch","raw_affiliation_strings":["Informatics and Systems Development, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informatics and Systems Development, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA","institution_ids":["https://openalex.org/I1925986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037212407","display_name":"Daniel Valdez","orcid":"https://orcid.org/0000-0001-5602-8422"},"institutions":[{"id":"https://openalex.org/I1925986","display_name":"Loyola University Chicago","ror":"https://ror.org/04b6x2g63","country_code":"US","type":"education","lineage":["https://openalex.org/I1925986"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Valdez","raw_affiliation_strings":["Informatics and Systems Development, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informatics and Systems Development, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA","institution_ids":["https://openalex.org/I1925986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016073609","display_name":"Suzan Zelisko","orcid":null},"institutions":[{"id":"https://openalex.org/I1925986","display_name":"Loyola University Chicago","ror":"https://ror.org/04b6x2g63","country_code":"US","type":"education","lineage":["https://openalex.org/I1925986"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Suzan Zelisko","raw_affiliation_strings":["Informatics and Systems Development, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informatics and Systems Development, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA","institution_ids":["https://openalex.org/I1925986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037189375","display_name":"Cara Joyce","orcid":"https://orcid.org/0000-0003-0468-8271"},"institutions":[{"id":"https://openalex.org/I1925986","display_name":"Loyola University Chicago","ror":"https://ror.org/04b6x2g63","country_code":"US","type":"education","lineage":["https://openalex.org/I1925986"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cara Joyce","raw_affiliation_strings":["Center for Health Outcomes and Informatics Research, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA","Department of Public Health Sciences, Stritch School of Medicine, Loyola University Chicago, Maywood, Illinois, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Health Outcomes and Informatics Research, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA","institution_ids":["https://openalex.org/I1925986"]},{"raw_affiliation_string":"Department of Public Health Sciences, Stritch School of Medicine, Loyola University Chicago, Maywood, Illinois, USA","institution_ids":["https://openalex.org/I1925986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049702218","display_name":"Fran\u00e7ois Modave","orcid":"https://orcid.org/0000-0003-4366-0757"},"institutions":[{"id":"https://openalex.org/I1925986","display_name":"Loyola University Chicago","ror":"https://ror.org/04b6x2g63","country_code":"US","type":"education","lineage":["https://openalex.org/I1925986"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fran\u00e7ois Modave","raw_affiliation_strings":["Center for Health Outcomes and Informatics Research, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA","Department of Public Health Sciences, Stritch School of Medicine, Loyola University Chicago, Maywood, Illinois, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Health Outcomes and Informatics Research, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA","institution_ids":["https://openalex.org/I1925986"]},{"raw_affiliation_string":"Department of Public Health Sciences, Stritch School of Medicine, Loyola University Chicago, Maywood, Illinois, USA","institution_ids":["https://openalex.org/I1925986"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066264839","display_name":"Ron Price","orcid":null},"institutions":[{"id":"https://openalex.org/I1925986","display_name":"Loyola University Chicago","ror":"https://ror.org/04b6x2g63","country_code":"US","type":"education","lineage":["https://openalex.org/I1925986"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ron Price","raw_affiliation_strings":["Center for Health Outcomes and Informatics Research, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA","Informatics and Systems Development, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Health Outcomes and Informatics Research, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA","institution_ids":["https://openalex.org/I1925986"]},{"raw_affiliation_string":"Informatics and Systems Development, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA","institution_ids":["https://openalex.org/I1925986"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5063499248"],"corresponding_institution_ids":["https://openalex.org/I1925986"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":1.8805,"has_fulltext":false,"cited_by_count":37,"citation_normalized_percentile":{"value":0.86175457,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"26","issue":"11","first_page":"1364","last_page":"1369"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.44749999046325684,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.44749999046325684,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.1444000005722046,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.07209999859333038,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7782537341117859},{"id":"https://openalex.org/keywords/data-warehouse","display_name":"Data warehouse","score":0.6137948632240295},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5802907347679138},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.5492413640022278},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.5408163666725159},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5306376814842224},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5279176235198975},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5153598189353943},{"id":"https://openalex.org/keywords/byte","display_name":"Byte","score":0.4634093940258026},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.4595758616924286},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.4258959889411926},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.41320914030075073},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3389131724834442},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.17203742265701294}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7782537341117859},{"id":"https://openalex.org/C135572916","wikidata":"https://www.wikidata.org/wiki/Q193351","display_name":"Data warehouse","level":2,"score":0.6137948632240295},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5802907347679138},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.5492413640022278},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.5408163666725159},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5306376814842224},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5279176235198975},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5153598189353943},{"id":"https://openalex.org/C43364308","wikidata":"https://www.wikidata.org/wiki/Q8799","display_name":"Byte","level":2,"score":0.4634093940258026},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.4595758616924286},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.4258959889411926},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.41320914030075073},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3389131724834442},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.17203742265701294},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010359","descriptor_name":"Patient Readmission","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010359","descriptor_name":"Patient Readmission","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010359","descriptor_name":"Patient Readmission","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/jamia/ocz068","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocz068","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:31145455","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31145455","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7647210","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7647210","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:7647210","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7647210","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},"sustainable_development_goals":[{"score":0.4000000059604645,"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W2067998880","https://openalex.org/W2101234009","https://openalex.org/W2105637130","https://openalex.org/W2110256524","https://openalex.org/W2114388055","https://openalex.org/W2136486905","https://openalex.org/W2146089916","https://openalex.org/W2146297376","https://openalex.org/W2151654631","https://openalex.org/W2283041611","https://openalex.org/W2470288096","https://openalex.org/W2520392019","https://openalex.org/W2537052583","https://openalex.org/W2560569441","https://openalex.org/W2564349466","https://openalex.org/W2596602780","https://openalex.org/W2749701213","https://openalex.org/W2765693998","https://openalex.org/W2786391630","https://openalex.org/W2788533098","https://openalex.org/W2795959543","https://openalex.org/W2896701938","https://openalex.org/W2898088584","https://openalex.org/W2901997892","https://openalex.org/W2906694199","https://openalex.org/W3025994842","https://openalex.org/W6675354045","https://openalex.org/W6719825138","https://openalex.org/W6748153368","https://openalex.org/W6755774745","https://openalex.org/W6777186496"],"related_works":["https://openalex.org/W4378651134","https://openalex.org/W4252684102","https://openalex.org/W2092530219","https://openalex.org/W2352307597","https://openalex.org/W1979633005","https://openalex.org/W2163724607","https://openalex.org/W3135403405","https://openalex.org/W2608983118","https://openalex.org/W1980092392","https://openalex.org/W2388464034"],"abstract_inverted_index":{"OBJECTIVE:":[0],"Natural":[1],"language":[2],"processing":[3,20,92],"(NLP)":[4],"engines":[5],"such":[6],"as":[7,218],"the":[8,46,81,107,143,156,196],"clinical":[9,30,47,102,124,157,223],"Text":[10,48,158],"Analysis":[11,49,159],"and":[12,50,54,88,129,160],"Knowledge":[13,51,161],"Extraction":[14,52,162],"System":[15,53,111,163],"are":[16],"a":[17,29,34,40,56,101,176,184,219,226],"solution":[18],"for":[19,22,28,85,94,179,221],"notes":[21],"research,":[23],"but":[24],"optimizing":[25],"their":[26],"performance":[27],"data":[31,83,87],"warehouse":[32],"remains":[33],"challenge.":[35],"We":[36],"aim":[37],"to":[38,106,168,190],"develop":[39],"high":[41,212],"throughput":[42,213],"NLP":[43,118,214],"architecture":[44,77,119,144,215],"using":[45,80,225],"present":[55],"predictive":[57],"model":[58,186],"use":[59],"case.":[60],"MATERIALS":[61],"AND":[62,207],"METHODS:":[63],"The":[64,76,117],"CDW":[65],"was":[66,78,104],"comprised":[67],"of":[68,142,155,201],"1":[69],"103":[70],"038":[71],"patients":[72],"across":[73,136,151],"10":[74,165],"years.":[75],"constructed":[79],"Hadoop":[82],"repository":[84],"source":[86],"3":[89],"large-scale":[90,222],"symmetric":[91],"servers":[93],"NLP.":[95],"Each":[96],"named":[97],"entity":[98],"mention":[99],"in":[100,126],"document":[103],"mapped":[105],"Unified":[108],"Medical":[109],"Language":[110],"concept":[112],"unique":[113],"identifier":[114],"(CUI).":[115],"RESULTS:":[116],"processed":[120],"83":[121],"867":[122],"802":[123],"documents":[125,148,169],"13.33":[127],"days":[128],"produced":[130],"37":[131],"721":[132],"886":[133],"606":[134],"CUIs":[135],"8":[137],"standardized":[138],"medical":[139],"vocabularies.":[140],"Performance":[141],"exceeded":[145],"500":[146],"000":[147,173],"per":[149],"hour":[150],"30":[152],"parallel":[153],"instances":[154,166],"including":[164],"dedicated":[167],"greater":[170],"than":[171],"20":[172],"bytes.":[174],"In":[175],"use-case":[177],"example":[178],"predicting":[180],"30-day":[181],"hospital":[182],"readmission,":[183],"CUI-based":[185,227],"had":[187],"similar":[188],"discrimination":[189],"n-grams":[191],"with":[192],"an":[193],"area":[194],"under":[195],"curve":[197],"receiver":[198],"operating":[199],"characteristic":[200],"0.75":[202],"(95%":[203],"CI,":[204],"0.74-0.76).":[205],"DISCUSSION":[206],"CONCLUSION:":[208],"Our":[209],"health":[210],"system's":[211],"may":[216],"serve":[217],"benchmark":[220],"research":[224],"approach.":[228]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":2}],"updated_date":"2026-06-06T09:05:17.133730","created_date":"2025-10-10T00:00:00"}
