{"id":"https://openalex.org/W2913154181","doi":"https://doi.org/10.1093/jamia/ocz007","title":"The journey to transparency, reproducibility, and replicability","display_name":"The journey to transparency, reproducibility, and replicability","publication_year":2019,"publication_date":"2019-01-09","ids":{"openalex":"https://openalex.org/W2913154181","doi":"https://doi.org/10.1093/jamia/ocz007","mag":"2913154181","pmid":"https://pubmed.ncbi.nlm.nih.gov/30689885"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocz007","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocz007","pdf_url":"https://academic.oup.com/jamia/article-pdf/26/3/185/34151418/ocz007.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"editorial","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/26/3/185/34151418/ocz007.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038579832","display_name":"Suzanne Bakken","orcid":"https://orcid.org/0000-0001-6202-6001"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Suzanne Bakken","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5038579832"],"corresponding_institution_ids":[],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":7.9239,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.97548801,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"26","issue":"3","first_page":"185","last_page":"187"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.949999988079071,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reproducibility","display_name":"Reproducibility","score":0.807113766670227},{"id":"https://openalex.org/keywords/transparency","display_name":"Transparency (behavior)","score":0.7870273590087891},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5418447256088257},{"id":"https://openalex.org/keywords/medical-physics","display_name":"Medical physics","score":0.4180777668952942},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3435703217983246},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.11569136381149292},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.09296748042106628},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07787832617759705}],"concepts":[{"id":"https://openalex.org/C9893847","wikidata":"https://www.wikidata.org/wiki/Q1425625","display_name":"Reproducibility","level":2,"score":0.807113766670227},{"id":"https://openalex.org/C2780233690","wikidata":"https://www.wikidata.org/wiki/Q535347","display_name":"Transparency (behavior)","level":2,"score":0.7870273590087891},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5418447256088257},{"id":"https://openalex.org/C19527891","wikidata":"https://www.wikidata.org/wiki/Q1120908","display_name":"Medical physics","level":1,"score":0.4180777668952942},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3435703217983246},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.11569136381149292},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.09296748042106628},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07787832617759705}],"mesh":[{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D011643","descriptor_name":"Publishing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D011643","descriptor_name":"Publishing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D011643","descriptor_name":"Publishing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/jamia/ocz007","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocz007","pdf_url":"https://academic.oup.com/jamia/article-pdf/26/3/185/34151418/ocz007.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:30689885","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30689885","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7647173","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7647173","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/jamia/ocz007","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocz007","pdf_url":"https://academic.oup.com/jamia/article-pdf/26/3/185/34151418/ocz007.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/5","display_name":"Gender equality"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2913154181.pdf","grobid_xml":"https://content.openalex.org/works/W2913154181.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W2036318837","https://openalex.org/W2113788769","https://openalex.org/W2169205464","https://openalex.org/W2300867265","https://openalex.org/W2741180300","https://openalex.org/W2906349441","https://openalex.org/W2906777138","https://openalex.org/W2908358765","https://openalex.org/W2908420211","https://openalex.org/W2911374865"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W3031052312","https://openalex.org/W4389568370","https://openalex.org/W3032375762","https://openalex.org/W1995515455","https://openalex.org/W2080531066","https://openalex.org/W2586801360","https://openalex.org/W3108674512","https://openalex.org/W1506200166","https://openalex.org/W1489783725"],"abstract_inverted_index":{"Regardless":[0],"of":[1,4,35,54,98,120,152,156],"the":[2,32,55,71,78,90,103,110,147,154],"type":[3],"biomedical":[5],"and":[6,21,30,38,67,73,81,95],"health":[7],"informatics":[8],"research":[9,79],"conducted":[10],"(eg":[11],"computational,":[12],"randomized":[13],"controlled":[14],"trials,":[15],"qualitative,":[16],"mixed":[17],"methods),":[18],"transparency,":[19],"reproducibility,":[20],"replicability":[22,96],"are":[23,46],"crucial":[24],"to":[25,49,76,84,87,101,142],"scientific":[26],"rigor,":[27],"open":[28,68],"science,":[29],"advancing":[31],"knowledge":[33],"base":[34],"our":[36],"field":[37],"its":[39],"application":[40],"across":[41,150],"practice":[42],"domains.":[43],"These":[44],"principles":[45,148],"also":[47],"essential":[48],"high-quality":[50],"publications":[51],"in":[52,129,144],"Journal":[53],"American":[56],"Medical":[57],"Informatics":[58],"Association":[59],"(JAMIA).":[60],"Transparency":[61],"is":[62,82],"reflected":[63],"by":[64],"explicit,":[65],"clear,":[66],"communication":[69],"about":[70],"methods":[72],"procedures":[74],"used":[75],"obtain":[77,89],"results":[80,92],"foundational":[83],"reproducibility":[85],"(ability":[86,97],"repeatedly":[88],"same":[91,104],"from":[93,117],"data)":[94],"other":[99],"investigators":[100],"observe":[102],"result":[105],"under":[106],"identical":[107],"conditions).":[108],"In":[109],"following":[111],"paragraphs,":[112],"I":[113],"summarize":[114],"key":[115],"strategies":[116,158],"a":[118],"number":[119],"authors":[121],"1-3":[122],"as":[123,125],"well":[124],"my":[126],"own":[127],"thoughts":[128],"4":[130],"categories":[131],"(data,":[132],"code,":[133],"connect,":[134],"publish)":[135],"and,":[136],"when":[137],"applicable,":[138],"describe":[139],"their":[140],"relationship":[141],"publishing":[143],"JAMIA.":[145],"While":[146],"apply":[149],"types":[151],"research,":[153],"relevance":[155],"some":[157],"varies.":[159]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
