{"id":"https://openalex.org/W2911661483","doi":"https://doi.org/10.1093/jamia/ocy178","title":"Criteria2Query: a natural language interface to clinical databases for cohort definition","display_name":"Criteria2Query: a natural language interface to clinical databases for cohort definition","publication_year":2018,"publication_date":"2018-11-29","ids":{"openalex":"https://openalex.org/W2911661483","doi":"https://doi.org/10.1093/jamia/ocy178","mag":"2911661483","pmid":"https://pubmed.ncbi.nlm.nih.gov/30753493"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocy178","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocy178","pdf_url":"https://academic.oup.com/jamia/article-pdf/26/4/294/34151511/ocy178.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jamia/article-pdf/26/4/294/34151511/ocy178.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064187343","display_name":"Chi Yuan","orcid":"https://orcid.org/0000-0002-8677-1476"},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Chi Yuan","raw_affiliation_strings":["Department of Biomedical Informatics, Columbia University, New York, New York, USA","Department of Computer Science and Technology, Nanjing University of Science and Technology, Nanjing, Jiangsu Province, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University, New York, New York, USA","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Department of Computer Science and Technology, Nanjing University of Science and Technology, Nanjing, Jiangsu Province, P.R. China","institution_ids":["https://openalex.org/I36399199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065153070","display_name":"Patrick Ryan","orcid":"https://orcid.org/0000-0002-9727-2138"},"institutions":[{"id":"https://openalex.org/I4210151386","display_name":"Janssen (United States)","ror":"https://ror.org/05af73403","country_code":"US","type":"company","lineage":["https://openalex.org/I1330063522","https://openalex.org/I4210151386"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Patrick B Ryan","raw_affiliation_strings":["Department of Biomedical Informatics, Columbia University, New York, New York, USA","Epidemiology Analytics, Janssen Research and Development, Titusville, New Jersey, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University, New York, New York, USA","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Epidemiology Analytics, Janssen Research and Development, Titusville, New Jersey, USA","institution_ids":["https://openalex.org/I4210151386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051450267","display_name":"Casey Ta","orcid":"https://orcid.org/0000-0002-4679-805X"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Casey Ta","raw_affiliation_strings":["Department of Biomedical Informatics, Columbia University, New York, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University, New York, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101254591","display_name":"Yixuan Guo","orcid":"https://orcid.org/0009-0009-1589-9067"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yixuan Guo","raw_affiliation_strings":["Department of Biomedical Informatics, Columbia University, New York, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University, New York, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101820102","display_name":"Ziran Li","orcid":"https://orcid.org/0009-0007-0620-3561"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ziran Li","raw_affiliation_strings":["Department of Biomedical Informatics, Columbia University, New York, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University, New York, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003851843","display_name":"Jill Hardin","orcid":"https://orcid.org/0000-0003-2682-2187"},"institutions":[{"id":"https://openalex.org/I4210151386","display_name":"Janssen (United States)","ror":"https://ror.org/05af73403","country_code":"US","type":"company","lineage":["https://openalex.org/I1330063522","https://openalex.org/I4210151386"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jill Hardin","raw_affiliation_strings":["Epidemiology Analytics, Janssen Research and Development, Titusville, New Jersey, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Epidemiology Analytics, Janssen Research and Development, Titusville, New Jersey, USA","institution_ids":["https://openalex.org/I4210151386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013899814","display_name":"Rupa Makadia","orcid":"https://orcid.org/0000-0002-3767-969X"},"institutions":[{"id":"https://openalex.org/I4210151386","display_name":"Janssen (United States)","ror":"https://ror.org/05af73403","country_code":"US","type":"company","lineage":["https://openalex.org/I1330063522","https://openalex.org/I4210151386"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rupa Makadia","raw_affiliation_strings":["Epidemiology Analytics, Janssen Research and Development, Titusville, New Jersey, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Epidemiology Analytics, Janssen Research and Development, Titusville, New Jersey, USA","institution_ids":["https://openalex.org/I4210151386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066288250","display_name":"Peng Jin","orcid":"https://orcid.org/0000-0001-5095-5743"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peng Jin","raw_affiliation_strings":["Department of Biomedical Informatics, Columbia University, New York, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University, New York, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045892464","display_name":"Ning Shang","orcid":"https://orcid.org/0000-0001-7040-5204"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ning Shang","raw_affiliation_strings":["Department of Biomedical Informatics, Columbia University, New York, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University, New York, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000333588","display_name":"Tian Kang","orcid":"https://orcid.org/0000-0002-8460-7525"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tian Kang","raw_affiliation_strings":["Department of Biomedical Informatics, Columbia University, New York, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University, New York, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009604048","display_name":"Chunhua Weng","orcid":"https://orcid.org/0000-0002-9624-0214"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chunhua Weng","raw_affiliation_strings":["Department of Biomedical Informatics, Columbia University, New York, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University, New York, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5009604048"],"corresponding_institution_ids":["https://openalex.org/I78577930"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":{"value":3967,"currency":"USD","value_usd":3967},"fwci":9.3049,"has_fulltext":true,"cited_by_count":173,"citation_normalized_percentile":{"value":0.98271168,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"26","issue":"4","first_page":"294","last_page":"305"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.6718000173568726,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.6718000173568726,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.06400000303983688,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.056699998676776886,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8108876943588257},{"id":"https://openalex.org/keywords/sql","display_name":"SQL","score":0.5758768320083618},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.525650143623352},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.46018561720848083},{"id":"https://openalex.org/keywords/query-language","display_name":"Query language","score":0.4386865496635437},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.4367600083351135},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4213692843914032},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.41453981399536133},{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.4130437970161438},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.40908294916152954},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.3939691483974457},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.39154815673828125},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3675777316093445},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15264469385147095}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8108876943588257},{"id":"https://openalex.org/C510870499","wikidata":"https://www.wikidata.org/wiki/Q47607","display_name":"SQL","level":2,"score":0.5758768320083618},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.525650143623352},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.46018561720848083},{"id":"https://openalex.org/C192028432","wikidata":"https://www.wikidata.org/wiki/Q845739","display_name":"Query language","level":2,"score":0.4386865496635437},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.4367600083351135},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4213692843914032},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.41453981399536133},{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.4130437970161438},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.40908294916152954},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.3939691483974457},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.39154815673828125},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3675777316093445},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15264469385147095},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002986","descriptor_name":"Clinical Trials as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002986","descriptor_name":"Clinical Trials as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002986","descriptor_name":"Clinical Trials as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002986","descriptor_name":"Clinical Trials as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004608","descriptor_name":"Eligibility Determination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004608","descriptor_name":"Eligibility Determination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004608","descriptor_name":"Eligibility Determination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004608","descriptor_name":"Eligibility Determination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018579","descriptor_name":"Patient Selection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018579","descriptor_name":"Patient Selection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018579","descriptor_name":"Patient Selection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018579","descriptor_name":"Patient Selection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/jamia/ocy178","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocy178","pdf_url":"https://academic.oup.com/jamia/article-pdf/26/4/294/34151511/ocy178.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:30753493","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30753493","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:europepmc.org:5397572","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6402359","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6402359","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6402359","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/jamia/ocy178","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocy178","pdf_url":"https://academic.oup.com/jamia/article-pdf/26/4/294/34151511/ocy178.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.5400000214576721,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1584075922","display_name":null,"funder_award_id":"UL1TR001873","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G1684742011","display_name":null,"funder_award_id":"UL1TR001873","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G5314141511","display_name":null,"funder_award_id":"CU15-2317","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G682085659","display_name":null,"funder_award_id":"R01LM009886","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G8906162516","display_name":null,"funder_award_id":"3OT3TR002027-01S1","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"}],"funders":[{"id":"https://openalex.org/F4320316438","display_name":"Georgia Clinical and Translational Science Alliance","ror":null},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2911661483.pdf","grobid_xml":"https://content.openalex.org/works/W2911661483.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W37244022","https://openalex.org/W198826634","https://openalex.org/W231452340","https://openalex.org/W1126991912","https://openalex.org/W1446829270","https://openalex.org/W1748957623","https://openalex.org/W1864116686","https://openalex.org/W2051326280","https://openalex.org/W2058924226","https://openalex.org/W2066578320","https://openalex.org/W2070696117","https://openalex.org/W2093652677","https://openalex.org/W2096619464","https://openalex.org/W2098590492","https://openalex.org/W2114847203","https://openalex.org/W2128304333","https://openalex.org/W2139736061","https://openalex.org/W2139865360","https://openalex.org/W2142862978","https://openalex.org/W2143749588","https://openalex.org/W2145618437","https://openalex.org/W2159583324","https://openalex.org/W2165067209","https://openalex.org/W2292790679","https://openalex.org/W2524643686","https://openalex.org/W2604410201","https://openalex.org/W6608016061","https://openalex.org/W6627291559","https://openalex.org/W6628488379","https://openalex.org/W6637898499","https://openalex.org/W6639354330"],"related_works":["https://openalex.org/W2048507547","https://openalex.org/W842810586","https://openalex.org/W4319940250","https://openalex.org/W2352298027","https://openalex.org/W2092919065","https://openalex.org/W3138801416","https://openalex.org/W4236762297","https://openalex.org/W2444550338","https://openalex.org/W2369351710","https://openalex.org/W2594363579"],"abstract_inverted_index":{"OBJECTIVE:":[0],"Cohort":[1],"definition":[2,20,45,214,242],"is":[3,21,34,228],"a":[4,35,56,77,219],"bottleneck":[5],"for":[6,43,147,167,175,238],"conducting":[7],"clinical":[8,30,49,87,225],"research":[9],"and":[10,29,46,64,81,85,106,127,135,141,163,170,182,189,231,235,255],"depends":[11],"on":[12],"subjective":[13],"decisions":[14],"by":[15,243],"domain":[16,139],"experts.":[17],"Data-driven":[18],"cohort":[19,44,213,241],"appealing":[22],"but":[23],"requires":[24],"substantial":[25],"knowledge":[26],"of":[27,203,205],"terminologies":[28],"data":[31,88],"models.":[32],"Criteria2Query":[33,54,160,209],"natural":[36,221],"language":[37,222],"interface":[38,223],"that":[39],"facilitates":[40],"human-computer":[41],"collaboration":[42],"execution":[47],"using":[48],"databases.":[50,226],"MATERIALS":[51],"AND":[52],"METHODS:":[53],"uses":[55],"hybrid":[57],"information":[58],"extraction":[59],"pipeline":[60],"combining":[61],"machine":[62],"learning":[63],"rule-based":[65],"methods":[66],"to":[67,95,224],"systematically":[68],"parse":[69],"eligibility":[70],"criteria":[71,79,120],"text,":[72],"transforms":[73],"it":[74],"first":[75],"into":[76,83],"structured":[78],"representation":[80],"next":[82],"sharable":[84],"executable":[86],"queries":[89,93,108],"represented":[90],"as":[91],"SQL":[92],"conforming":[94],"the":[96,110,143],"OMOP":[97],"Common":[98],"Data":[99],"Model.":[100],"Users":[101],"can":[102],"interactively":[103],"review,":[104],"refine,":[105],"execute":[107],"in":[109,210],"ATLAS":[111],"web":[112],"application.":[113],"To":[114],"test":[115],"effectiveness,":[116],"we":[117],"evaluated":[118,132],"125":[119],"across":[121],"different":[122],"disease":[123],"domains":[124],"from":[125],"ClinicalTrials.gov":[126],"52":[128],"user-entered":[129],"criteria.":[130],"We":[131,152,217,249],"F1":[133,165],"score":[134,166],"accuracy":[136],"against":[137],"2":[138],"experts":[140],"calculated":[142],"average":[144],"computation":[145],"time":[146],"fully":[148,233],"automated":[149,234],"query":[150,194],"formulation.":[151],"conducted":[153],"an":[154],"anonymous":[155],"survey":[156],"evaluating":[157],"usability.":[158,256],"RESULTS:":[159],"achieved":[161],"0.795":[162],"0.805":[164],"entity":[168,180],"recognition":[169],"relation":[171],"extraction,":[172],"respectively.":[173,191],"Accuracies":[174],"negation":[176],"detection,":[177,179],"logic":[178],"normalization,":[181],"attribute":[183],"normalization":[184],"were":[185],"0.984,":[186],"0.864,":[187],"0.514":[188],"0.793,":[190],"Fully":[192],"automatic":[193],"formulation":[195],"took":[196],"1.22":[197],"seconds/criterion.":[198],"More":[199],"than":[200],"80%":[201],"(11+":[202],"13)":[204],"users":[206],"would":[207],"use":[208],"their":[211],"future":[212],"tasks.":[215],"CONCLUSIONS:":[216],"contribute":[218],"novel":[220],"It":[227],"open":[229],"source":[230],"supports":[232],"interactive":[236],"modes":[237],"autonomous":[239],"data-driven":[240],"researchers":[244],"with":[245],"minimal":[246],"human":[247],"effort.":[248],"demonstrate":[250],"its":[251],"promising":[252],"user":[253],"friendliness":[254]},"counts_by_year":[{"year":2026,"cited_by_count":13},{"year":2025,"cited_by_count":17},{"year":2024,"cited_by_count":40},{"year":2023,"cited_by_count":27},{"year":2022,"cited_by_count":21},{"year":2021,"cited_by_count":27},{"year":2020,"cited_by_count":19},{"year":2019,"cited_by_count":9}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
