{"id":"https://openalex.org/W2901482671","doi":"https://doi.org/10.1093/jamia/ocy154","title":"Automated and flexible identification of complex disease: building a model for systemic lupus erythematosus using noisy labeling","display_name":"Automated and flexible identification of complex disease: building a model for systemic lupus erythematosus using noisy labeling","publication_year":2018,"publication_date":"2018-11-13","ids":{"openalex":"https://openalex.org/W2901482671","doi":"https://doi.org/10.1093/jamia/ocy154","mag":"2901482671","pmid":"https://pubmed.ncbi.nlm.nih.gov/30476175"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocy154","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocy154","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080359048","display_name":"Sara G. Murray","orcid":"https://orcid.org/0000-0003-3910-3739"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sara G Murray","raw_affiliation_strings":["Department of Medicine, University of California, San Francisco, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, University of California, San Francisco, California, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017505484","display_name":"Anand Avati","orcid":"https://orcid.org/0000-0002-5818-9497"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anand Avati","raw_affiliation_strings":["Department of Computer Science, Stanford University, Stanford, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037692645","display_name":"Gabriela Schmajuk","orcid":"https://orcid.org/0000-0003-2687-5043"},"institutions":[{"id":"https://openalex.org/I1315708478","display_name":"San Francisco VA Medical Center","ror":"https://ror.org/049peqw80","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1315708478","https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210125474","https://openalex.org/I4210143381"]},{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gabriela Schmajuk","raw_affiliation_strings":["Department of Medicine, San Francisco VA Medical Center, San Francisco, California, USA","Department of Medicine, University of California, San Francisco, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, San Francisco VA Medical Center, San Francisco, California, USA","institution_ids":["https://openalex.org/I1315708478"]},{"raw_affiliation_string":"Department of Medicine, University of California, San Francisco, California, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027451778","display_name":"Jinoos Yazdany","orcid":"https://orcid.org/0000-0002-3508-4094"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jinoos Yazdany","raw_affiliation_strings":["Department of Medicine, University of California, San Francisco, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, University of California, San Francisco, California, USA","institution_ids":["https://openalex.org/I180670191"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5080359048"],"corresponding_institution_ids":["https://openalex.org/I180670191"],"apc_list":{"value":4332,"currency":"USD","value_usd":4332},"apc_paid":null,"fwci":3.6514,"has_fulltext":false,"cited_by_count":48,"citation_normalized_percentile":{"value":0.93276791,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"26","issue":"1","first_page":"61","last_page":"65"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10308","display_name":"Systemic Lupus Erythematosus Research","score":0.9300000071525574,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10308","display_name":"Systemic Lupus Erythematosus Research","score":0.9300000071525574,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.010599999688565731,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10200","display_name":"Rheumatoid Arthritis Research and Therapies","score":0.004699999932199717,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.7539473176002502},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6626690030097961},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6465384364128113},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.638119637966156},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5474803447723389},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5436928868293762},{"id":"https://openalex.org/keywords/health-records","display_name":"Health records","score":0.5347933173179626},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5279604196548462},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.444114089012146},{"id":"https://openalex.org/keywords/systemic-lupus-erythematosus","display_name":"Systemic lupus erythematosus","score":0.43621110916137695},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3640550374984741},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.1108468770980835},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.0919889509677887},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.090884268283844},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.08594009280204773}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.7539473176002502},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6626690030097961},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6465384364128113},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.638119637966156},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5474803447723389},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5436928868293762},{"id":"https://openalex.org/C3019952477","wikidata":"https://www.wikidata.org/wiki/Q1324077","display_name":"Health records","level":3,"score":0.5347933173179626},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5279604196548462},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.444114089012146},{"id":"https://openalex.org/C2776912625","wikidata":"https://www.wikidata.org/wiki/Q1485","display_name":"Systemic lupus erythematosus","level":3,"score":0.43621110916137695},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3640550374984741},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.1108468770980835},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.0919889509677887},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.090884268283844},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.08594009280204773},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/jamia/ocy154","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocy154","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:30476175","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30476175","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:5826322","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6308013","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:ark:/13030/qt22f2m6v4","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt22f2m6v4","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/22f2m6v4","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of the American Medical Informatics Association, vol 26, iss 1","raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.49000000953674316}],"awards":[{"id":"https://openalex.org/G1769089091","display_name":null,"funder_award_id":"P30AR070155","funder_id":"https://openalex.org/F4320337362","funder_display_name":"National Institute of Arthritis and Musculoskeletal and Skin Diseases"},{"id":"https://openalex.org/G205899808","display_name":null,"funder_award_id":"K24\u2010AR\u2010074534","funder_id":"https://openalex.org/F4320337362","funder_display_name":"National Institute of Arthritis and Musculoskeletal and Skin Diseases"},{"id":"https://openalex.org/G2581179093","display_name":null,"funder_award_id":"R01 HS024412","funder_id":"https://openalex.org/F4320332177","funder_display_name":"Agency for Healthcare Research and Quality"},{"id":"https://openalex.org/G3312044993","display_name":null,"funder_award_id":"K23\u2010AR\u2010063770","funder_id":"https://openalex.org/F4320337362","funder_display_name":"National Institute of Arthritis and Musculoskeletal and Skin Diseases"},{"id":"https://openalex.org/G4917062396","display_name":null,"funder_award_id":"R01 HS024412","funder_id":"https://openalex.org/F4320308971","funder_display_name":"Rheumatology Research Foundation"}],"funders":[{"id":"https://openalex.org/F4320308971","display_name":"Rheumatology Research Foundation","ror":"https://ror.org/03sdr0263"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332177","display_name":"Agency for Healthcare Research and Quality","ror":"https://ror.org/03jmfdf59"},{"id":"https://openalex.org/F4320337362","display_name":"National Institute of Arthritis and Musculoskeletal and Skin Diseases","ror":"https://ror.org/006zn3t30"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W2044540807","https://openalex.org/W2051743300","https://openalex.org/W2070527591","https://openalex.org/W2104167780","https://openalex.org/W2119541025","https://openalex.org/W2138162199","https://openalex.org/W2154048976","https://openalex.org/W2356882517","https://openalex.org/W2483963880"],"related_works":["https://openalex.org/W4388154275","https://openalex.org/W4255176303","https://openalex.org/W2784954823","https://openalex.org/W2494523064","https://openalex.org/W2943623134","https://openalex.org/W2588219639","https://openalex.org/W2215759665","https://openalex.org/W2030292806","https://openalex.org/W2960358116","https://openalex.org/W2039506624"],"abstract_inverted_index":{"Accurate":[0],"and":[1,28,45,114],"efficient":[2],"identification":[3,58,143],"of":[4,30,43,59,77,96,141],"complex":[5,131],"chronic":[6],"conditions":[7],"in":[8,144],"the":[9,31,93,112,134,139,145],"electronic":[10],"health":[11],"record":[12],"(EHR)":[13],"is":[14,111,123],"an":[15],"important":[16],"but":[17],"challenging":[18],"task":[19],"that":[20,37],"has":[21,133],"historically":[22],"relied":[23],"on":[24],"tedious":[25],"clinician":[26],"review":[27],"oversimplification":[29],"disease.":[32],"Here":[33],"we":[34,90],"adapt":[35],"methods":[36],"allow":[38],"for":[39,53,84],"automated":[40],"\"noisy":[41],"labeling\"":[42],"positive":[44],"negative":[46],"controls":[47],"to":[48,56,102,129,136],"create":[49],"a":[50,118,126],"\"silver":[51],"standard\"":[52],"machine":[54],"learning":[55],"automate":[57],"systemic":[60],"lupus":[61],"erythematosus":[62],"(SLE).":[63],"Our":[64],"final":[65],"model,":[66],"which":[67],"includes":[68],"both":[69],"structured":[70],"data":[71],"as":[72,74],"well":[73],"text":[75],"processing":[76],"clinical":[78,104],"notes,":[79],"outperformed":[80],"all":[81],"existing":[82],"algorithms":[83],"SLE":[85],"(AUC":[86],"0.97).":[87],"In":[88],"addition,":[89],"demonstrate":[91],"how":[92],"probabilistic":[94],"outputs":[95],"this":[97],"model":[98],"can":[99],"be":[100],"adapted":[101],"various":[103],"needs,":[105],"selecting":[106],"high":[107],"thresholds":[108,116],"when":[109,117],"specificity":[110],"priority":[113],"lower":[115],"more":[119],"inclusive":[120],"patient":[121],"population":[122,142],"desired.":[124],"Deploying":[125],"similar":[127],"methodology":[128],"other":[130],"diseases":[132],"potential":[135],"dramatically":[137],"simplify":[138],"landscape":[140],"EHR.":[146],"MeSH":[147],"terms:":[148],"Electronic":[149],"Health":[150],"Records,":[151],"Machine":[152],"Learning,":[153],"Lupus":[154],"Erythematosus,":[155],"Phenotype,":[156],"Algorithms.":[157]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1}],"updated_date":"2026-08-27T14:10:00.468798","created_date":"2025-10-10T00:00:00"}
