{"id":"https://openalex.org/W2802420380","doi":"https://doi.org/10.1093/jamia/ocy038","title":"Automatic recognition of self-acknowledged limitations in clinical research literature","display_name":"Automatic recognition of self-acknowledged limitations in clinical research literature","publication_year":2018,"publication_date":"2018-03-28","ids":{"openalex":"https://openalex.org/W2802420380","doi":"https://doi.org/10.1093/jamia/ocy038","mag":"2802420380","pmid":"https://pubmed.ncbi.nlm.nih.gov/29718377"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocy038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocy038","pdf_url":"https://academic.oup.com/jamia/article-pdf/25/7/855/25080478/ocy038.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jamia/article-pdf/25/7/855/25080478/ocy038.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016571803","display_name":"Halil Kilicoglu","orcid":"https://orcid.org/0000-0003-3987-9393"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Halil Kilicoglu","raw_affiliation_strings":["Lister Hill National Center for Biomedical Communications, U.S. National Library of Medicine, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lister Hill National Center for Biomedical Communications, U.S. National Library of Medicine, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210109390"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049096404","display_name":"Graciela Rosemblat","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Graciela Rosemblat","raw_affiliation_strings":["Lister Hill National Center for Biomedical Communications, U.S. National Library of Medicine, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lister Hill National Center for Biomedical Communications, U.S. National Library of Medicine, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210109390"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051043566","display_name":"Mario Mali\u010dki","orcid":"https://orcid.org/0000-0003-0698-1930"},"institutions":[{"id":"https://openalex.org/I2802928900","display_name":"Amsterdam UMC Location University of Amsterdam","ror":"https://ror.org/03t4gr691","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2802928900","https://openalex.org/I4210151833"]},{"id":"https://openalex.org/I92251255","display_name":"University of Split","ror":"https://ror.org/00m31ft63","country_code":"HR","type":"education","lineage":["https://openalex.org/I92251255"]}],"countries":["HR","NL"],"is_corresponding":false,"raw_author_name":"Mario Mali\u010dki","raw_affiliation_strings":["Department of General Practice, Academic Medical Center, Amsterdam, The Netherlands","Department of Research in Biomedicine and Health, University of Split School of Medicine, Split, Croatia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of General Practice, Academic Medical Center, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I2802928900"]},{"raw_affiliation_string":"Department of Research in Biomedicine and Health, University of Split School of Medicine, Split, Croatia","institution_ids":["https://openalex.org/I92251255"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083975390","display_name":"Gerben ter Riet","orcid":"https://orcid.org/0000-0002-2231-7637"},"institutions":[{"id":"https://openalex.org/I2802928900","display_name":"Amsterdam UMC Location University of Amsterdam","ror":"https://ror.org/03t4gr691","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2802928900","https://openalex.org/I4210151833"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Gerben ter Riet","raw_affiliation_strings":["Department of General Practice, Academic Medical Center, Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of General Practice, Academic Medical Center, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I2802928900"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5016571803"],"corresponding_institution_ids":["https://openalex.org/I4210109390"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":{"value":3967,"currency":"USD","value_usd":3967},"fwci":0.7216,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.69240129,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"25","issue":"7","first_page":"855","last_page":"861"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4487999975681305,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4487999975681305,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10206","display_name":"Meta-analysis and systematic reviews","score":0.38909998536109924,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.01979999989271164,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8057242631912231},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.7454385757446289},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7025469541549683},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6611257195472717},{"id":"https://openalex.org/keywords/transparency","display_name":"Transparency (behavior)","score":0.6486195921897888},{"id":"https://openalex.org/keywords/binary-classification","display_name":"Binary classification","score":0.49373921751976013},{"id":"https://openalex.org/keywords/f1-score","display_name":"F1 score","score":0.45841050148010254},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.44225984811782837},{"id":"https://openalex.org/keywords/logistic-regression","display_name":"Logistic regression","score":0.4366685152053833},{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.42170462012290955},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4121350049972534},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4048904478549957}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8057242631912231},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.7454385757446289},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7025469541549683},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6611257195472717},{"id":"https://openalex.org/C2780233690","wikidata":"https://www.wikidata.org/wiki/Q535347","display_name":"Transparency (behavior)","level":2,"score":0.6486195921897888},{"id":"https://openalex.org/C66905080","wikidata":"https://www.wikidata.org/wiki/Q17005494","display_name":"Binary classification","level":3,"score":0.49373921751976013},{"id":"https://openalex.org/C148524875","wikidata":"https://www.wikidata.org/wiki/Q6975395","display_name":"F1 score","level":2,"score":0.45841050148010254},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.44225984811782837},{"id":"https://openalex.org/C151956035","wikidata":"https://www.wikidata.org/wiki/Q1132755","display_name":"Logistic regression","level":2,"score":0.4366685152053833},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.42170462012290955},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4121350049972534},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4048904478549957},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D016015","descriptor_name":"Logistic Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016015","descriptor_name":"Logistic Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016015","descriptor_name":"Logistic Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/jamia/ocy038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocy038","pdf_url":"https://academic.oup.com/jamia/article-pdf/25/7/855/25080478/ocy038.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:29718377","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29718377","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pure.amsterdamumc.nl:publications/c7e85d69-91b7-4aa8-a1ef-02e45eeb2826","is_oa":true,"landing_page_url":"https://pure.amsterdamumc.nl/en/publications/c7e85d69-91b7-4aa8-a1ef-02e45eeb2826","pdf_url":"https://pure.amsterdamumc.nl/ws/files/158186977/Automatic-recognition-of-self-acknowledged-limitations-in-clinical-research-literature.pdf","source":{"id":"https://openalex.org/S7407055222","display_name":"Pure Amsterdam UMC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kilicoglu, H, Rosemblat, G, Mali\u010dki, M & ter Riet, G 2018, 'Automatic recognition of self-acknowledged limitations in clinical research literature', Journal of the American Medical Informatics Association, vol. 25, no. 7, pp. 855-861. https://doi.org/10.1093/jamia/ocy038","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:amcpub:oai:pure.amc.nl:publications/6db73c54-8598-4d12-99f9-15f22d62c47e","is_oa":false,"landing_page_url":"https://pure.amc.nl/en/publications/automatic-recognition-of-selfacknowledged-limitations-in-clinical-research-literature(6db73c54-8598-4d12-99f9-15f22d62c47e).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of the American Medical Informatics Association, 25(7), 855 - 861. Oxford University Press","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:hbo:oai:hbokennisbank.nl:amsterdam_pure:oai:pure.hva.nl:publications/75e67c91-4392-4e9e-a355-e0ee498d20ad","is_oa":false,"landing_page_url":"https://research.hva.nl/en/publications/75e67c91-4392-4e9e-a355-e0ee498d20ad","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA, 25(7), 855 - 861. Oxford University Press","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:5466906","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6016608","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/jamia/ocy038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocy038","pdf_url":"https://academic.oup.com/jamia/article-pdf/25/7/855/25080478/ocy038.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2802420380.pdf","grobid_xml":"https://content.openalex.org/works/W2802420380.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W618607536","https://openalex.org/W1731081199","https://openalex.org/W1971701254","https://openalex.org/W1972244026","https://openalex.org/W1987404332","https://openalex.org/W2020959315","https://openalex.org/W2022527135","https://openalex.org/W2049069390","https://openalex.org/W2065258296","https://openalex.org/W2097052916","https://openalex.org/W2108696783","https://openalex.org/W2118585731","https://openalex.org/W2134568263","https://openalex.org/W2136504847","https://openalex.org/W2144981148","https://openalex.org/W2147469877","https://openalex.org/W2147994374","https://openalex.org/W2148008364","https://openalex.org/W2152445141","https://openalex.org/W2162311237","https://openalex.org/W2163922914","https://openalex.org/W2184378182","https://openalex.org/W2290112678","https://openalex.org/W2331384579","https://openalex.org/W2481029616","https://openalex.org/W2484269232","https://openalex.org/W2570760970","https://openalex.org/W2754718739","https://openalex.org/W2952111767","https://openalex.org/W2952174148","https://openalex.org/W4236805817","https://openalex.org/W4296816736","https://openalex.org/W4313371821","https://openalex.org/W6677656871","https://openalex.org/W7028469425"],"related_works":["https://openalex.org/W2747895175","https://openalex.org/W2946583009","https://openalex.org/W2614669534","https://openalex.org/W2104406636","https://openalex.org/W2105512057","https://openalex.org/W4252625449","https://openalex.org/W2115788596","https://openalex.org/W2498443996","https://openalex.org/W2741028958","https://openalex.org/W3131201603"],"abstract_inverted_index":{"Objective:":[0],"To":[1,18],"automatically":[2],"recognize":[3],"self-acknowledged":[4,72],"limitations":[5,73,196],"in":[6,13,60,103,128,197],"clinical":[7,198],"research":[8,15,190],"publications":[9],"to":[10,98,105,159,192],"support":[11,119],"efforts":[12],"improving":[14],"transparency.":[16],"Methods:":[17],"develop":[19],"our":[20],"recognition":[21,53],"methods,":[22],"we":[23,62],"used":[24,113],"a":[25,56,65,69,81,92,160],"set":[26,102],"of":[27,37,186,195],"8431":[28],"sentences":[29,39,131],"from":[30,68],"1197":[31],"PubMed":[32],"Central":[33],"articles.":[34],"A":[35],"subset":[36],"these":[38],"was":[40,48],"manually":[41],"annotated":[42],"for":[43],"training/testing,":[44],"and":[45,91,118],"inter-annotator":[46],"agreement":[47,127],"calculated.":[49],"We":[50,76],"cast":[51],"the":[52,100,137,141,145,184],"problem":[54],"as":[55],"binary":[57],"classification":[58,107],"task,":[59],"which":[61],"determine":[63],"whether":[64],"given":[66],"sentence":[67],"publication":[70],"discusses":[71],"or":[74],"not.":[75],"experimented":[77],"with":[78,148,156],"three":[79,138],"methods:":[80],"rule-based":[82,142],"approach":[83,178],"based":[84],"on":[85,189],"document":[86],"structure,":[87],"supervised":[88,165],"machine":[89,110],"learning,":[90],"semi-supervised":[93],"method":[94,143],"that":[95],"uses":[96],"self-training":[97,155],"expand":[99],"training":[101],"order":[104],"improve":[106,193],"performance.":[108],"The":[109,177],"learning":[111,166],"algorithms":[112],"were":[114],"logistic":[115],"regression":[116],"(LR)":[117],"vector":[120],"machines":[121],"(SVM).":[122],"Results:":[123],"Annotators":[124],"had":[125],"good":[126],"labeling":[129],"limitation":[130],"(Krippendorff's":[132],"\u03b1":[133],"=":[134],"0.781).":[135],"Of":[136],"methods":[139],"used,":[140],"yielded":[144],"best":[146],"performance":[147],"91.5%":[149],"accuracy":[150],"(95%":[151],"CI":[152,169,174],"[90.1-92.9]),":[153],"while":[154],"SVM":[157],"led":[158],"small":[161],"improvement":[162],"over":[163],"fully":[164],"(89.9%,":[167],"95%":[168,173],"[88.4-91.4]":[170],"vs":[171],"89.6%,":[172],"[88.1-91.1]).":[175],"Conclusions:":[176],"presented":[179],"can":[180],"be":[181],"incorporated":[182],"into":[183],"workflows":[185],"stakeholders":[187],"focusing":[188],"transparency":[191],"reporting":[194],"studies.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
