{"id":"https://openalex.org/W2755153059","doi":"https://doi.org/10.1093/jamia/ocx097","title":"A computable pathology report for precision medicine: extending an observables ontology unifying SNOMED CT and LOINC","display_name":"A computable pathology report for precision medicine: extending an observables ontology unifying SNOMED CT and LOINC","publication_year":2017,"publication_date":"2017-08-29","ids":{"openalex":"https://openalex.org/W2755153059","doi":"https://doi.org/10.1093/jamia/ocx097","mag":"2755153059","pmid":"https://pubmed.ncbi.nlm.nih.gov/29024958"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocx097","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocx097","pdf_url":"https://academic.oup.com/jamia/article-pdf/25/3/259/24151915/ocx097.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jamia/article-pdf/25/3/259/24151915/ocx097.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065133673","display_name":"W. Scott Campbell","orcid":"https://orcid.org/0000-0001-7025-2914"},"institutions":[{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"funder","lineage":["https://openalex.org/I59130452"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Walter S Campbell","raw_affiliation_strings":["Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA","institution_ids":["https://openalex.org/I59130452"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101580276","display_name":"Daniel Karlsson","orcid":"https://orcid.org/0009-0004-6053-3324"},"institutions":[{"id":"https://openalex.org/I102134673","display_name":"Link\u00f6ping University","ror":"https://ror.org/05ynxx418","country_code":"SE","type":"education","lineage":["https://openalex.org/I102134673"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Daniel Karlsson","raw_affiliation_strings":["Department of Biomedical Engineering, Link\u00f6ping University, Link\u00f6ping, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Link\u00f6ping University, Link\u00f6ping, Sweden","institution_ids":["https://openalex.org/I102134673"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045642230","display_name":"Daniel J. Vreeman","orcid":"https://orcid.org/0000-0001-5119-6531"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I1324682000","display_name":"Regenstrief Institute","ror":"https://ror.org/05f2ywb48","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1324682000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel J Vreeman","raw_affiliation_strings":["Regenstrief Institute, Indiana University School of Medicine, Indianapolis, IN, USA"],"affiliations":[{"raw_affiliation_string":"Regenstrief Institute, Indiana University School of Medicine, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I1324682000","https://openalex.org/I55769427","https://openalex.org/I4394709130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110264828","display_name":"Audrey J. Lazenby","orcid":null},"institutions":[{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"funder","lineage":["https://openalex.org/I59130452"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Audrey J Lazenby","raw_affiliation_strings":["Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA","institution_ids":["https://openalex.org/I59130452"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052717470","display_name":"Geoffrey A. Talmon","orcid":"https://orcid.org/0000-0002-4841-286X"},"institutions":[{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"funder","lineage":["https://openalex.org/I59130452"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Geoffrey A Talmon","raw_affiliation_strings":["Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA","institution_ids":["https://openalex.org/I59130452"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037413369","display_name":"James R. Campbell","orcid":"https://orcid.org/0000-0003-0251-4550"},"institutions":[{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"funder","lineage":["https://openalex.org/I59130452"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James R Campbell","raw_affiliation_strings":["Department of Internal Medicine, University of Nebraska Medical Center, Omaha, NE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine, University of Nebraska Medical Center, Omaha, NE, USA","institution_ids":["https://openalex.org/I59130452"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5065133673"],"corresponding_institution_ids":["https://openalex.org/I59130452"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":{"value":3967,"currency":"USD","value_usd":3967},"fwci":1.2298,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.79168016,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"25","issue":"3","first_page":"259","last_page":"266"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12664","display_name":"Clinical practice guidelines implementation","score":0.9574000239372253,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9514999985694885,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/snomed-ct","display_name":"SNOMED CT","score":0.9745615720748901},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.6750723123550415},{"id":"https://openalex.org/keywords/systematized-nomenclature-of-medicine","display_name":"Systematized Nomenclature of Medicine","score":0.6109733581542969},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.585724949836731},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5003230571746826},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.47187772393226624},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.45011624693870544},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4304943084716797},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3725118935108185},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.10151433944702148}],"concepts":[{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.9745615720748901},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.6750723123550415},{"id":"https://openalex.org/C44681071","wikidata":"https://www.wikidata.org/wiki/Q4048820","display_name":"Systematized Nomenclature of Medicine","level":4,"score":0.6109733581542969},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.585724949836731},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5003230571746826},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.47187772393226624},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.45011624693870544},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4304943084716797},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3725118935108185},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.10151433944702148},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1093/jamia/ocx097","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocx097","pdf_url":"https://academic.oup.com/jamia/article-pdf/25/3/259/24151915/ocx097.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:29024958","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29024958","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7378880","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7378880","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},{"id":"pmh:oai:scholarworks.indianapolis.iu.edu:1805/24907","is_oa":false,"landing_page_url":"https://hdl.handle.net/1805/24907","pdf_url":null,"source":{"id":"https://openalex.org/S4306400987","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PMC","raw_type":"Article"},{"id":"pmh:oai:scholarworks.iupui.edu:1805/24907","is_oa":true,"landing_page_url":"http://hdl.handle.net/1805/24907","pdf_url":null,"source":{"id":"https://openalex.org/S4306400987","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PMC","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/jamia/ocx097","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocx097","pdf_url":"https://academic.oup.com/jamia/article-pdf/25/3/259/24151915/ocx097.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.5600000023841858}],"awards":[{"id":"https://openalex.org/G6705378326","display_name":null,"funder_award_id":"1U01HG009455-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7041594918","display_name":null,"funder_award_id":"CDRN-1306-04631","funder_id":"https://openalex.org/F4320308927","funder_display_name":"Patient-Centered Outcomes Research Institute"}],"funders":[{"id":"https://openalex.org/F4320308927","display_name":"Patient-Centered Outcomes Research Institute","ror":"https://ror.org/014q65q44"},{"id":"https://openalex.org/F4320309137","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2755153059.pdf","grobid_xml":"https://content.openalex.org/works/W2755153059.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W46981721","https://openalex.org/W115493916","https://openalex.org/W1639231815","https://openalex.org/W1771499318","https://openalex.org/W1962919783","https://openalex.org/W1977212742","https://openalex.org/W1982838377","https://openalex.org/W2011345138","https://openalex.org/W2049521532","https://openalex.org/W2065785936","https://openalex.org/W2092781974","https://openalex.org/W2100762242","https://openalex.org/W2110405845","https://openalex.org/W2140966604","https://openalex.org/W2143154538","https://openalex.org/W2144890062","https://openalex.org/W2146297638","https://openalex.org/W2155878985","https://openalex.org/W2159151673","https://openalex.org/W2170857061","https://openalex.org/W2309021002","https://openalex.org/W2398795031","https://openalex.org/W2413051247","https://openalex.org/W2620600609","https://openalex.org/W3026755508","https://openalex.org/W4229615477","https://openalex.org/W4231278614","https://openalex.org/W4247881463","https://openalex.org/W4285719527","https://openalex.org/W4301465612","https://openalex.org/W4301661015","https://openalex.org/W6601983772","https://openalex.org/W6604680584","https://openalex.org/W6653184315","https://openalex.org/W6683272064","https://openalex.org/W6712698539","https://openalex.org/W6738663987","https://openalex.org/W7018248530"],"related_works":["https://openalex.org/W2581432157","https://openalex.org/W4386159309","https://openalex.org/W983237315","https://openalex.org/W4295077997","https://openalex.org/W4384914659","https://openalex.org/W2419080317","https://openalex.org/W2026282251","https://openalex.org/W1708042184","https://openalex.org/W1511848092","https://openalex.org/W2405923535"],"abstract_inverted_index":{"The":[0],"absence":[1],"of":[2],"a":[3,8],"robust":[4],"observables":[5],"ontology":[6],"represents":[7],"barrier":[9],"to":[10,30],"data":[11,33],"capture":[12],"and":[13,39],"reuse":[14],"in":[15,24],"clinical":[16],"areas":[17],"founded":[18],"upon":[19],"observational":[20],"information.":[21],"Terminology":[22],"developed":[23],"this":[25],"project":[26],"establishes":[27],"the":[28],"model":[29],"characterize":[31],"pathology":[32],"for":[34],"information":[35],"exchange,":[36],"public":[37],"health,":[38],"research":[40],"analytics.":[41]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":2}],"updated_date":"2026-03-18T14:38:29.013473","created_date":"2025-10-10T00:00:00"}
