{"id":"https://openalex.org/W2582146834","doi":"https://doi.org/10.1093/jamia/ocw177","title":"MetaMap Lite: an evaluation of a new Java implementation of MetaMap","display_name":"MetaMap Lite: an evaluation of a new Java implementation of MetaMap","publication_year":2016,"publication_date":"2016-12-10","ids":{"openalex":"https://openalex.org/W2582146834","doi":"https://doi.org/10.1093/jamia/ocw177","mag":"2582146834"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocw177","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocw177","pdf_url":"https://academic.oup.com/jamia/article-pdf/24/4/841/25421974/ocw177.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jamia/article-pdf/24/4/841/25421974/ocw177.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046764593","display_name":"Dina Demner\u2010Fushman","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Dina Demner-Fushman","raw_affiliation_strings":["Lister Hill National Center for Biomedical Communications, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA"],"affiliations":[{"raw_affiliation_string":"Lister Hill National Center for Biomedical Communications, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010040138","display_name":"Willie J. Rogers","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Willie J Rogers","raw_affiliation_strings":["Lister Hill National Center for Biomedical Communications, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA"],"affiliations":[{"raw_affiliation_string":"Lister Hill National Center for Biomedical Communications, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018615989","display_name":"Alan R. Aronson","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alan R Aronson","raw_affiliation_strings":["Lister Hill National Center for Biomedical Communications, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA"],"affiliations":[{"raw_affiliation_string":"Lister Hill National Center for Biomedical Communications, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5046764593"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":{"value":3967,"currency":"USD","value_usd":3967},"fwci":21.2836,"has_fulltext":false,"cited_by_count":181,"citation_normalized_percentile":{"value":0.9934617,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"24","issue":"4","first_page":"841","last_page":"844"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.8541204929351807},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5139279365539551},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.27964845299720764}],"concepts":[{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.8541204929351807},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5139279365539551},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.27964845299720764}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/jamia/ocw177","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocw177","pdf_url":"https://academic.oup.com/jamia/article-pdf/24/4/841/25421974/ocw177.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:5034197","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6080672","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/jamia/ocw177","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocw177","pdf_url":"https://academic.oup.com/jamia/article-pdf/24/4/841/25421974/ocw177.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.800000011920929,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2582146834.pdf","grobid_xml":"https://content.openalex.org/works/W2582146834.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W106842490","https://openalex.org/W198852883","https://openalex.org/W1964625659","https://openalex.org/W1982464493","https://openalex.org/W2076471773","https://openalex.org/W2101374419","https://openalex.org/W2122402213","https://openalex.org/W2139865360","https://openalex.org/W2142016317","https://openalex.org/W2143902665","https://openalex.org/W2146089916","https://openalex.org/W2156235098","https://openalex.org/W2158743996","https://openalex.org/W2162311237","https://openalex.org/W2168041406","https://openalex.org/W2169099542","https://openalex.org/W2239231358","https://openalex.org/W2331398706","https://openalex.org/W2414833276","https://openalex.org/W6604324380","https://openalex.org/W6608207126","https://openalex.org/W6715851921"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"Abstract":[0],"MetaMap":[1,25,34,47,64],"is":[2],"a":[3],"widely":[4],"used":[5],"named":[6],"entity":[7],"recognition":[8],"tool":[9],"that":[10],"identifies":[11],"concepts":[12],"from":[13],"the":[14,32],"Unified":[15],"Medical":[16],"Language":[17],"System":[18,78],"Metathesaurus":[19],"in":[20,36],"text.":[21],"This":[22],"study":[23],"presents":[24],"Lite,":[26],"an":[27],"implementation":[28],"of":[29,31,41,63],"some":[30],"basic":[33],"functions":[35],"Java.":[37],"On":[38],"several":[39],"collections":[40],"biomedical":[42,68],"literature":[43],"and":[44,52,55,65,75,80],"clinical":[45,72],"text,":[46],"Lite":[48],"demonstrated":[49],"real-time":[50],"speed":[51],"precision,":[53],"recall,":[54],"F1":[56],"scores":[57],"comparable":[58],"to":[59],"or":[60],"exceeding":[61],"those":[62],"other":[66],"popular":[67],"text":[69],"processing":[70],"tools,":[71],"Text":[73],"Analysis":[74],"Knowledge":[76],"Extraction":[77],"(cTAKES)":[79],"DNorm.":[81]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":22},{"year":2021,"cited_by_count":30},{"year":2020,"cited_by_count":36},{"year":2019,"cited_by_count":28},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":6}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
