{"id":"https://openalex.org/W2532802663","doi":"https://doi.org/10.1093/jamia/ocw144","title":"Improving a full-text search engine: the importance of negation detection and family history context to identify cases in a biomedical data warehouse","display_name":"Improving a full-text search engine: the importance of negation detection and family history context to identify cases in a biomedical data warehouse","publication_year":2016,"publication_date":"2016-10-20","ids":{"openalex":"https://openalex.org/W2532802663","doi":"https://doi.org/10.1093/jamia/ocw144","mag":"2532802663","pmid":"https://pubmed.ncbi.nlm.nih.gov/28339516"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocw144","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocw144","pdf_url":"https://academic.oup.com/jamia/article-pdf/24/3/607/13063252/ocw144.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/24/3/607/13063252/ocw144.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007065847","display_name":"Nicolas Garcelon","orcid":"https://orcid.org/0000-0002-3326-2811"},"institutions":[{"id":"https://openalex.org/I110736937","display_name":"D\u00e9l\u00e9gation Paris 5","ror":"https://ror.org/02e0y6e06","country_code":"FR","type":"government","lineage":["https://openalex.org/I110736937","https://openalex.org/I154526488"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]},{"id":"https://openalex.org/I4210092322","display_name":"Centre de Recherche des Cordeliers","ror":"https://ror.org/00dmms154","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I39804081","https://openalex.org/I4210092322"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Nicolas Garcelon","raw_affiliation_strings":["INSERM, Centre de Recherche des Cordeliers, UMR 1138 Equipe 22, Universit\u00e9 Paris Descartes, Sorbonne Paris Cit\u00e9, Paris, France","Institut Imagine, Paris Descartes Universit\u00e9 Paris Descartes-Sorbonne Paris Cit\u00e9, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INSERM, Centre de Recherche des Cordeliers, UMR 1138 Equipe 22, Universit\u00e9 Paris Descartes, Sorbonne Paris Cit\u00e9, Paris, France","institution_ids":["https://openalex.org/I4210092322","https://openalex.org/I154526488","https://openalex.org/I4210091437","https://openalex.org/I204730241"]},{"raw_affiliation_string":"Institut Imagine, Paris Descartes Universit\u00e9 Paris Descartes-Sorbonne Paris Cit\u00e9, Paris, France","institution_ids":["https://openalex.org/I110736937","https://openalex.org/I4210091437","https://openalex.org/I204730241"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002976747","display_name":"Antoine Neuraz","orcid":"https://orcid.org/0000-0001-7142-6728"},"institutions":[{"id":"https://openalex.org/I110736937","display_name":"D\u00e9l\u00e9gation Paris 5","ror":"https://ror.org/02e0y6e06","country_code":"FR","type":"government","lineage":["https://openalex.org/I110736937","https://openalex.org/I154526488"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]},{"id":"https://openalex.org/I4210092322","display_name":"Centre de Recherche des Cordeliers","ror":"https://ror.org/00dmms154","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I39804081","https://openalex.org/I4210092322"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Antoine Neuraz","raw_affiliation_strings":["INSERM, Centre de Recherche des Cordeliers, UMR 1138 Equipe 22, Universit\u00e9 Paris Descartes, Sorbonne Paris Cit\u00e9, Paris, France","Institut Imagine, Paris Descartes Universit\u00e9 Paris Descartes-Sorbonne Paris Cit\u00e9, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INSERM, Centre de Recherche des Cordeliers, UMR 1138 Equipe 22, Universit\u00e9 Paris Descartes, Sorbonne Paris Cit\u00e9, Paris, France","institution_ids":["https://openalex.org/I4210092322","https://openalex.org/I154526488","https://openalex.org/I4210091437","https://openalex.org/I204730241"]},{"raw_affiliation_string":"Institut Imagine, Paris Descartes Universit\u00e9 Paris Descartes-Sorbonne Paris Cit\u00e9, Paris, France","institution_ids":["https://openalex.org/I110736937","https://openalex.org/I4210091437","https://openalex.org/I204730241"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014469892","display_name":"Vincent Beno\u00eet","orcid":"https://orcid.org/0000-0002-7868-5869"},"institutions":[{"id":"https://openalex.org/I110736937","display_name":"D\u00e9l\u00e9gation Paris 5","ror":"https://ror.org/02e0y6e06","country_code":"FR","type":"government","lineage":["https://openalex.org/I110736937","https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Vincent Benoit","raw_affiliation_strings":["Institut Imagine, Paris Descartes Universit\u00e9 Paris Descartes-Sorbonne Paris Cit\u00e9, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut Imagine, Paris Descartes Universit\u00e9 Paris Descartes-Sorbonne Paris Cit\u00e9, Paris, France","institution_ids":["https://openalex.org/I110736937","https://openalex.org/I4210091437","https://openalex.org/I204730241"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045427122","display_name":"R\u00e9mi Salomon","orcid":"https://orcid.org/0000-0002-3030-9506"},"institutions":[{"id":"https://openalex.org/I110736937","display_name":"D\u00e9l\u00e9gation Paris 5","ror":"https://ror.org/02e0y6e06","country_code":"FR","type":"government","lineage":["https://openalex.org/I110736937","https://openalex.org/I154526488"]},{"id":"https://openalex.org/I1288880153","display_name":"H\u00f4pital Necker-Enfants Malades","ror":"https://ror.org/05tr67282","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I1288880153","https://openalex.org/I4210097159","https://openalex.org/I4210120235"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]},{"id":"https://openalex.org/I4210097159","display_name":"Assistance Publique \u2013 H\u00f4pitaux de Paris","ror":"https://ror.org/00pg5jh14","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"R\u00e9mi Salomon","raw_affiliation_strings":["Institut Imagine, Paris Descartes Universit\u00e9 Paris Descartes-Sorbonne Paris Cit\u00e9, Paris, France","Service de N\u00e9phrologie P\u00e9diatrique, H\u00f4pital Necker-Enfants Malades, Assistance Publique -H\u00f4pitaux de Paris (AP-HP), Universit\u00e9 Paris Descartes, Sorbonne Paris Cit\u00e9, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut Imagine, Paris Descartes Universit\u00e9 Paris Descartes-Sorbonne Paris Cit\u00e9, Paris, France","institution_ids":["https://openalex.org/I110736937","https://openalex.org/I4210091437","https://openalex.org/I204730241"]},{"raw_affiliation_string":"Service de N\u00e9phrologie P\u00e9diatrique, H\u00f4pital Necker-Enfants Malades, Assistance Publique -H\u00f4pitaux de Paris (AP-HP), Universit\u00e9 Paris Descartes, Sorbonne Paris Cit\u00e9, France","institution_ids":["https://openalex.org/I1288880153","https://openalex.org/I4210097159","https://openalex.org/I4210091437","https://openalex.org/I204730241"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037397269","display_name":"Anita Burgun","orcid":"https://orcid.org/0000-0001-6855-4366"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]},{"id":"https://openalex.org/I4210092322","display_name":"Centre de Recherche des Cordeliers","ror":"https://ror.org/00dmms154","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I39804081","https://openalex.org/I4210092322"]},{"id":"https://openalex.org/I4210097159","display_name":"Assistance Publique \u2013 H\u00f4pitaux de Paris","ror":"https://ror.org/00pg5jh14","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159"]},{"id":"https://openalex.org/I4210102325","display_name":"H\u00f4pital Europ\u00e9en Georges-Pompidou","ror":"https://ror.org/016vx5156","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159","https://openalex.org/I4210102325","https://openalex.org/I4210120235"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Anita Burgun","raw_affiliation_strings":["H\u00f4pital Europ\u00e9en Georges Pompidou, Assistance Publique -H\u00f4pitaux de Paris (AP-HP), Universit\u00e9 Paris Descartes, Sorbonne Paris Cit\u00e9, France","INSERM, Centre de Recherche des Cordeliers, UMR 1138 Equipe 22, Universit\u00e9 Paris Descartes, Sorbonne Paris Cit\u00e9, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"H\u00f4pital Europ\u00e9en Georges Pompidou, Assistance Publique -H\u00f4pitaux de Paris (AP-HP), Universit\u00e9 Paris Descartes, Sorbonne Paris Cit\u00e9, France","institution_ids":["https://openalex.org/I4210102325","https://openalex.org/I4210097159","https://openalex.org/I4210091437","https://openalex.org/I204730241"]},{"raw_affiliation_string":"INSERM, Centre de Recherche des Cordeliers, UMR 1138 Equipe 22, Universit\u00e9 Paris Descartes, Sorbonne Paris Cit\u00e9, Paris, France","institution_ids":["https://openalex.org/I4210092322","https://openalex.org/I154526488","https://openalex.org/I4210091437","https://openalex.org/I204730241"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5007065847"],"corresponding_institution_ids":["https://openalex.org/I110736937","https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210091437","https://openalex.org/I4210092322"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":4.444,"has_fulltext":true,"cited_by_count":52,"citation_normalized_percentile":{"value":0.94389635,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"24","issue":"3","first_page":"607","last_page":"613"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.6894000172615051,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.6894000172615051,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.12639999389648438,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11819","display_name":"Data-Driven Disease Surveillance","score":0.036400001496076584,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6534267067909241},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.650037407875061},{"id":"https://openalex.org/keywords/data-warehouse","display_name":"Data warehouse","score":0.5385549664497375},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5381143689155579},{"id":"https://openalex.org/keywords/negation","display_name":"Negation","score":0.5242003202438354},{"id":"https://openalex.org/keywords/family-history","display_name":"Family history","score":0.5024499893188477},{"id":"https://openalex.org/keywords/narrative","display_name":"Narrative","score":0.4898662269115448},{"id":"https://openalex.org/keywords/electronic-health-record","display_name":"Electronic health record","score":0.4380286633968353},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.4304889142513275},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4115043580532074},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.37880823016166687},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.36591529846191406},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3454433083534241},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.24834007024765015},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.22137829661369324},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.17855015397071838},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.1498987376689911},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.13146597146987915}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6534267067909241},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.650037407875061},{"id":"https://openalex.org/C135572916","wikidata":"https://www.wikidata.org/wiki/Q193351","display_name":"Data warehouse","level":2,"score":0.5385549664497375},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5381143689155579},{"id":"https://openalex.org/C2185349","wikidata":"https://www.wikidata.org/wiki/Q190558","display_name":"Negation","level":2,"score":0.5242003202438354},{"id":"https://openalex.org/C2781179581","wikidata":"https://www.wikidata.org/wiki/Q2857712","display_name":"Family history","level":2,"score":0.5024499893188477},{"id":"https://openalex.org/C199033989","wikidata":"https://www.wikidata.org/wiki/Q1318295","display_name":"Narrative","level":2,"score":0.4898662269115448},{"id":"https://openalex.org/C3020144179","wikidata":"https://www.wikidata.org/wiki/Q10871684","display_name":"Electronic health record","level":3,"score":0.4380286633968353},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.4304889142513275},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4115043580532074},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.37880823016166687},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.36591529846191406},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3454433083534241},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.24834007024765015},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.22137829661369324},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.17855015397071838},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.1498987376689911},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.13146597146987915},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C548081761","wikidata":"https://www.wikidata.org/wiki/Q180388","display_name":"Waste management","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000073458","descriptor_name":"Data Warehousing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073458","descriptor_name":"Data Warehousing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073458","descriptor_name":"Data Warehousing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005192","descriptor_name":"Family Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005192","descriptor_name":"Family Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005192","descriptor_name":"Family Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008487","descriptor_name":"Medical History Taking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008487","descriptor_name":"Medical History Taking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008487","descriptor_name":"Medical History Taking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/jamia/ocw144","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocw144","pdf_url":"https://academic.oup.com/jamia/article-pdf/24/3/607/13063252/ocw144.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:28339516","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28339516","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:HAL:hal-03868144v1","is_oa":false,"landing_page_url":"https://inria.hal.science/hal-03868144","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of the American Medical Informatics Association, 2017, 24 (3), pp.607-613. &#x27E8;10.1093/jamia/ocw144&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:HAL:hal-03962335v1","is_oa":false,"landing_page_url":"https://inria.hal.science/hal-03962335","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of the American Medical Informatics Association, 2017, 24 (3), pp.607-613. &#x27E8;10.1093/jamia/ocw144&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:7651926","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7651926","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/jamia/ocw144","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocw144","pdf_url":"https://academic.oup.com/jamia/article-pdf/24/3/607/13063252/ocw144.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.41999998688697815,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2532802663.pdf","grobid_xml":"https://content.openalex.org/works/W2532802663.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W40385435","https://openalex.org/W61818120","https://openalex.org/W118085941","https://openalex.org/W180510140","https://openalex.org/W182767159","https://openalex.org/W189082795","https://openalex.org/W907816333","https://openalex.org/W1540478817","https://openalex.org/W1648607318","https://openalex.org/W1863753810","https://openalex.org/W1950048153","https://openalex.org/W2008998978","https://openalex.org/W2038889169","https://openalex.org/W2100468229","https://openalex.org/W2111698097","https://openalex.org/W2112275671","https://openalex.org/W2122164360","https://openalex.org/W2139865360","https://openalex.org/W2146089916","https://openalex.org/W2153393891","https://openalex.org/W2171825063","https://openalex.org/W2204870653","https://openalex.org/W2397743548","https://openalex.org/W2401942216","https://openalex.org/W2407965423","https://openalex.org/W2418833025","https://openalex.org/W2978960360","https://openalex.org/W6602560974","https://openalex.org/W6604840568","https://openalex.org/W6607434451","https://openalex.org/W6607718186","https://openalex.org/W6624251560","https://openalex.org/W6632420182","https://openalex.org/W6636881345","https://openalex.org/W6640652905","https://openalex.org/W6678333813","https://openalex.org/W6686852135","https://openalex.org/W6712543731","https://openalex.org/W6712827607","https://openalex.org/W6713904563"],"related_works":["https://openalex.org/W2059922809","https://openalex.org/W2387527986","https://openalex.org/W2479250593","https://openalex.org/W4283261428","https://openalex.org/W2131148043","https://openalex.org/W1976073696","https://openalex.org/W2092783274","https://openalex.org/W3165804307","https://openalex.org/W4318829426","https://openalex.org/W4391025849"],"abstract_inverted_index":{"OBJECTIVE:":[0],"The":[1,111,126],"repurposing":[2],"of":[3,86,90,134,139],"electronic":[4],"health":[5],"records":[6],"(EHRs)":[7],"can":[8],"improve":[9],"clinical":[10,34,63],"and":[11,36,49,54,101,104,106,116,122],"genetic":[12],"research":[13],"for":[14],"rare":[15,21,140],"diseases.":[16],"However,":[17],"significant":[18],"information":[19],"in":[20,26,51],"disease":[22,141],"EHRs":[23],"is":[24,84],"embedded":[25],"the":[27,87,91,109],"narrative":[28,52],"reports,":[29],"which":[30],"contain":[31],"many":[32],"negated":[33],"signs":[35],"family":[37,47],"medical":[38],"history.":[39],"This":[40,82],"paper":[41],"presents":[42],"a":[43,62,72,130,137],"method":[44,128],"to":[45,74],"detect":[46],"history":[48],"negation":[50],"reports":[53,78],"evaluates":[55],"its":[56],"impact":[57],"on":[58],"selecting":[59],"populations":[60],"from":[61,79,108,136],"data":[64],"warehouse":[65],"(CDW).":[66],"MATERIALS":[67],"AND":[68],"METHODS:":[69],"We":[70,96],"developed":[71],"pipeline":[73,83],"process":[75,89],"1.6":[76],"million":[77],"multiple":[80],"sources.":[81],"part":[85],"load":[88],"Necker":[92],"Hospital":[93],"CDW.":[94,110],"RESULTS:":[95],"identified":[97],"patients":[98],"with":[99],"\"Lupus":[100],"diarrhea,\"":[102],"\"Crohn's":[103],"diabetes,\"":[105],"\"NPHP1\"":[107],"overall":[112],"precision,":[113],"recall,":[114],"specificity,":[115],"F-measure":[117],"were":[118],"0.85,":[119],"0.98,":[120],"0.93,":[121],"0.91,":[123],"respectively.":[124],"CONCLUSION:":[125],"proposed":[127],"generates":[129],"highly":[131],"accurate":[132],"identification":[133],"cases":[135],"CDW":[138],"EHRs.":[142]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":4}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
