{"id":"https://openalex.org/W2322120487","doi":"https://doi.org/10.1093/jamia/ocw022","title":"IMPACT: a whole-exome sequencing analysis pipeline for integrating molecular profiles with actionable therapeutics in clinical samples","display_name":"IMPACT: a whole-exome sequencing analysis pipeline for integrating molecular profiles with actionable therapeutics in clinical samples","publication_year":2016,"publication_date":"2016-03-28","ids":{"openalex":"https://openalex.org/W2322120487","doi":"https://doi.org/10.1093/jamia/ocw022","mag":"2322120487","pmid":"https://pubmed.ncbi.nlm.nih.gov/27026619"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocw022","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocw022","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4926746","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042695602","display_name":"Jennifer D. Hintzsche","orcid":"https://orcid.org/0000-0002-3779-3070"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer Hintzsche","raw_affiliation_strings":["Division of Medical Oncology, Department of Medicine, School of Medicine","Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Medical Oncology, Department of Medicine, School of Medicine","institution_ids":[]},{"raw_affiliation_string":"Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100384983","display_name":"Jihye Kim","orcid":"https://orcid.org/0000-0002-0338-2329"},"institutions":[{"id":"https://openalex.org/I4210134151","display_name":"University of Colorado Cancer Center","ror":"https://ror.org/04cqn7d42","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210134151"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jihye Kim","raw_affiliation_strings":["Division of Medical Oncology, Department of Medicine, School of Medicine","University of Colorado Cancer Center All: University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA","Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Medical Oncology, Department of Medicine, School of Medicine","institution_ids":[]},{"raw_affiliation_string":"University of Colorado Cancer Center All: University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA","institution_ids":["https://openalex.org/I4210134151","https://openalex.org/I51713134","https://openalex.org/I921990950"]},{"raw_affiliation_string":"Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064937521","display_name":"Vinod Kumar Yadav","orcid":"https://orcid.org/0000-0001-6450-7036"},"institutions":[{"id":"https://openalex.org/I4210097902","display_name":"Center for Personalized Cancer Treatment","ror":"https://ror.org/00xjcve44","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210097902"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["NL","US"],"is_corresponding":false,"raw_author_name":"Vinod Yadav","raw_affiliation_strings":["Division of Biomedical Informatics and Personalized Medicine, Department of Medicine, School of Medicine","Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biomedical Informatics and Personalized Medicine, Department of Medicine, School of Medicine","institution_ids":["https://openalex.org/I4210097902"]},{"raw_affiliation_string":"Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022583816","display_name":"Carol M. Amato","orcid":"https://orcid.org/0000-0002-4945-8819"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carol Amato","raw_affiliation_strings":["Division of Medical Oncology, Department of Medicine, School of Medicine","Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Medical Oncology, Department of Medicine, School of Medicine","institution_ids":[]},{"raw_affiliation_string":"Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089081930","display_name":"Steven E. Robinson","orcid":null},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven E Robinson","raw_affiliation_strings":["Division of Medical Oncology, Department of Medicine, School of Medicine","Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Medical Oncology, Department of Medicine, School of Medicine","institution_ids":[]},{"raw_affiliation_string":"Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074714252","display_name":"Eric Seelenfreund","orcid":null},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric Seelenfreund","raw_affiliation_strings":["Division of Medical Oncology, Department of Medicine, School of Medicine","Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Medical Oncology, Department of Medicine, School of Medicine","institution_ids":[]},{"raw_affiliation_string":"Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000972573","display_name":"Yiqun G. Shellman","orcid":"https://orcid.org/0000-0003-0598-5753"},"institutions":[{"id":"https://openalex.org/I4210134151","display_name":"University of Colorado Cancer Center","ror":"https://ror.org/04cqn7d42","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210134151"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yiqun Shellman","raw_affiliation_strings":["Department of Dermatology, School of Medicine","University of Colorado Cancer Center All: University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA","Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Dermatology, School of Medicine","institution_ids":[]},{"raw_affiliation_string":"University of Colorado Cancer Center All: University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA","institution_ids":["https://openalex.org/I4210134151","https://openalex.org/I51713134","https://openalex.org/I921990950"]},{"raw_affiliation_string":"Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091190395","display_name":"J. Wisell","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134151","display_name":"University of Colorado Cancer Center","ror":"https://ror.org/04cqn7d42","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210134151"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua Wisell","raw_affiliation_strings":["Department of Pathology, School of Medicine","University of Colorado Cancer Center All: University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA","Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, School of Medicine","institution_ids":[]},{"raw_affiliation_string":"University of Colorado Cancer Center All: University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA","institution_ids":["https://openalex.org/I4210134151","https://openalex.org/I51713134","https://openalex.org/I921990950"]},{"raw_affiliation_string":"Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110037907","display_name":"Allison Applegate","orcid":null},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Allison Applegate","raw_affiliation_strings":["Division of Medical Oncology, Department of Medicine, School of Medicine","Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Medical Oncology, Department of Medicine, School of Medicine","institution_ids":[]},{"raw_affiliation_string":"Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036784999","display_name":"Martin D. McCarter","orcid":"https://orcid.org/0000-0001-8174-1713"},"institutions":[{"id":"https://openalex.org/I4210134151","display_name":"University of Colorado Cancer Center","ror":"https://ror.org/04cqn7d42","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210134151"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin McCarter","raw_affiliation_strings":["Department of Surgery, School of Medicine","University of Colorado Cancer Center All: University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA","Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Surgery, School of Medicine","institution_ids":[]},{"raw_affiliation_string":"University of Colorado Cancer Center All: University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA","institution_ids":["https://openalex.org/I4210134151","https://openalex.org/I51713134","https://openalex.org/I921990950"]},{"raw_affiliation_string":"Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072457552","display_name":"Neil F. Box","orcid":"https://orcid.org/0000-0002-3486-0346"},"institutions":[{"id":"https://openalex.org/I4210134151","display_name":"University of Colorado Cancer Center","ror":"https://ror.org/04cqn7d42","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210134151"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Neil Box","raw_affiliation_strings":["Department of Dermatology, School of Medicine","University of Colorado Cancer Center All: University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA","Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Dermatology, School of Medicine","institution_ids":[]},{"raw_affiliation_string":"University of Colorado Cancer Center All: University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA","institution_ids":["https://openalex.org/I4210134151","https://openalex.org/I51713134","https://openalex.org/I921990950"]},{"raw_affiliation_string":"Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054490246","display_name":"John J. Tentler","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134151","display_name":"University of Colorado Cancer Center","ror":"https://ror.org/04cqn7d42","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210134151"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Tentler","raw_affiliation_strings":["Division of Medical Oncology, Department of Medicine, School of Medicine","University of Colorado Cancer Center All: University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA","Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Medical Oncology, Department of Medicine, School of Medicine","institution_ids":[]},{"raw_affiliation_string":"University of Colorado Cancer Center All: University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA","institution_ids":["https://openalex.org/I4210134151","https://openalex.org/I51713134","https://openalex.org/I921990950"]},{"raw_affiliation_string":"Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036093562","display_name":"Subhajyoti De","orcid":"https://orcid.org/0000-0002-2313-8593"},"institutions":[{"id":"https://openalex.org/I151808059","display_name":"Colorado School of Public Health","ror":"https://ror.org/005x9g035","country_code":"US","type":"education","lineage":["https://openalex.org/I151808059"]},{"id":"https://openalex.org/I4210097902","display_name":"Center for Personalized Cancer Treatment","ror":"https://ror.org/00xjcve44","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210097902"]},{"id":"https://openalex.org/I4210134151","display_name":"University of Colorado Cancer Center","ror":"https://ror.org/04cqn7d42","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210134151"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["NL","US"],"is_corresponding":false,"raw_author_name":"Subhajyoti De","raw_affiliation_strings":["Department of Biostatistics and Informatics, Colorado School of Public Health","Division of Biomedical Informatics and Personalized Medicine, Department of Medicine, School of Medicine","University of Colorado Cancer Center All: University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA","Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Informatics, Colorado School of Public Health","institution_ids":["https://openalex.org/I151808059"]},{"raw_affiliation_string":"Division of Biomedical Informatics and Personalized Medicine, Department of Medicine, School of Medicine","institution_ids":["https://openalex.org/I4210097902"]},{"raw_affiliation_string":"University of Colorado Cancer Center All: University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA","institution_ids":["https://openalex.org/I4210134151","https://openalex.org/I51713134","https://openalex.org/I921990950"]},{"raw_affiliation_string":"Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034106929","display_name":"William A. Robinson","orcid":"https://orcid.org/0000-0003-1875-9691"},"institutions":[{"id":"https://openalex.org/I4210134151","display_name":"University of Colorado Cancer Center","ror":"https://ror.org/04cqn7d42","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210134151"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William A Robinson","raw_affiliation_strings":["Division of Medical Oncology, Department of Medicine, School of Medicine","University of Colorado Cancer Center All: University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA","Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Medical Oncology, Department of Medicine, School of Medicine","institution_ids":[]},{"raw_affiliation_string":"University of Colorado Cancer Center All: University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA","institution_ids":["https://openalex.org/I4210134151","https://openalex.org/I51713134","https://openalex.org/I921990950"]},{"raw_affiliation_string":"Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019556057","display_name":"Aik Choon Tan","orcid":"https://orcid.org/0000-0003-2955-8369"},"institutions":[{"id":"https://openalex.org/I151808059","display_name":"Colorado School of Public Health","ror":"https://ror.org/005x9g035","country_code":"US","type":"education","lineage":["https://openalex.org/I151808059"]},{"id":"https://openalex.org/I4210134151","display_name":"University of Colorado Cancer Center","ror":"https://ror.org/04cqn7d42","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210134151"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aik Choon Tan","raw_affiliation_strings":["Department of Biostatistics and Informatics, Colorado School of Public Health","Division of Medical Oncology, Department of Medicine, School of Medicine","University of Colorado Cancer Center All: University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA","Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Informatics, Colorado School of Public Health","institution_ids":["https://openalex.org/I151808059"]},{"raw_affiliation_string":"Division of Medical Oncology, Department of Medicine, School of Medicine","institution_ids":[]},{"raw_affiliation_string":"University of Colorado Cancer Center All: University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA","institution_ids":["https://openalex.org/I4210134151","https://openalex.org/I51713134","https://openalex.org/I921990950"]},{"raw_affiliation_string":"Associate Professor of Bioinformatics, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Professor of Medicine, Rella and Monroe Rifkin Endowed Chair in Cancer Research, Division of Medical Oncology, Department of Medicine, University of Colorado Anschutz Medical Campus;","institution_ids":["https://openalex.org/I51713134"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":3.3694,"has_fulltext":false,"cited_by_count":42,"citation_normalized_percentile":{"value":0.92467217,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"23","issue":"4","first_page":"721","last_page":"730"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11533","display_name":"Melanoma and MAPK Pathways","score":0.5033000111579895,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11533","display_name":"Melanoma and MAPK Pathways","score":0.5033000111579895,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.24740000069141388,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10417","display_name":"Lung Cancer Treatments and Mutations","score":0.09099999815225601,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/neuroblastoma-ras-viral-oncogene-homolog","display_name":"Neuroblastoma RAS viral oncogene homolog","score":0.7041386365890503},{"id":"https://openalex.org/keywords/exome-sequencing","display_name":"Exome sequencing","score":0.6553202867507935},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.6152415871620178},{"id":"https://openalex.org/keywords/cdkn2a","display_name":"CDKN2A","score":0.5558604598045349},{"id":"https://openalex.org/keywords/exome","display_name":"Exome","score":0.4996476173400879},{"id":"https://openalex.org/keywords/kras","display_name":"KRAS","score":0.48718518018722534},{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.4756436347961426},{"id":"https://openalex.org/keywords/egfr-inhibitors","display_name":"EGFR inhibitors","score":0.4617284834384918},{"id":"https://openalex.org/keywords/melanoma","display_name":"Melanoma","score":0.43806177377700806},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4280582666397095},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3928569555282593},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.3768257796764374},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.34589844942092896},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.3105594217777252},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23319965600967407},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.22333931922912598},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20834514498710632},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20454135537147522},{"id":"https://openalex.org/keywords/epidermal-growth-factor-receptor","display_name":"Epidermal growth factor receptor","score":0.12039515376091003},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.10941377282142639}],"concepts":[{"id":"https://openalex.org/C21790070","wikidata":"https://www.wikidata.org/wiki/Q18030215","display_name":"Neuroblastoma RAS viral oncogene homolog","level":5,"score":0.7041386365890503},{"id":"https://openalex.org/C16671776","wikidata":"https://www.wikidata.org/wiki/Q5420592","display_name":"Exome sequencing","level":4,"score":0.6553202867507935},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.6152415871620178},{"id":"https://openalex.org/C2780265364","wikidata":"https://www.wikidata.org/wiki/Q5009957","display_name":"CDKN2A","level":3,"score":0.5558604598045349},{"id":"https://openalex.org/C10590036","wikidata":"https://www.wikidata.org/wiki/Q417664","display_name":"Exome","level":5,"score":0.4996476173400879},{"id":"https://openalex.org/C2781187634","wikidata":"https://www.wikidata.org/wiki/Q20969980","display_name":"KRAS","level":4,"score":0.48718518018722534},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.4756436347961426},{"id":"https://openalex.org/C2777506169","wikidata":"https://www.wikidata.org/wiki/Q424401","display_name":"EGFR inhibitors","level":4,"score":0.4617284834384918},{"id":"https://openalex.org/C2777658100","wikidata":"https://www.wikidata.org/wiki/Q180614","display_name":"Melanoma","level":2,"score":0.43806177377700806},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4280582666397095},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3928569555282593},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.3768257796764374},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.34589844942092896},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.3105594217777252},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23319965600967407},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.22333931922912598},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20834514498710632},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20454135537147522},{"id":"https://openalex.org/C2779438470","wikidata":"https://www.wikidata.org/wiki/Q424401","display_name":"Epidermal growth factor receptor","level":3,"score":0.12039515376091003},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.10941377282142639},{"id":"https://openalex.org/C526805850","wikidata":"https://www.wikidata.org/wiki/Q188874","display_name":"Colorectal cancer","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000077192","descriptor_name":"Adenocarcinoma of Lung","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077192","descriptor_name":"Adenocarcinoma of Lung","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077192","descriptor_name":"Adenocarcinoma of Lung","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000230","descriptor_name":"Adenocarcinoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000230","descriptor_name":"Adenocarcinoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000230","descriptor_name":"Adenocarcinoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008545","descriptor_name":"Melanoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008545","descriptor_name":"Melanoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008545","descriptor_name":"Melanoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018773","descriptor_name":"Genes, erbB-1","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018773","descriptor_name":"Genes, erbB-1","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018773","descriptor_name":"Genes, erbB-1","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019008","descriptor_name":"Drug Resistance, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019008","descriptor_name":"Drug Resistance, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019008","descriptor_name":"Drug Resistance, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/jamia/ocw022","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocw022","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:27026619","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27026619","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:jaminfo:23/4/721","is_oa":false,"landing_page_url":"http://jamia.oxfordjournals.org/cgi/content/short/23/4/721","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:4926746","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4926746","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:4926746","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4926746","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.7099999785423279,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1729002171","display_name":null,"funder_award_id":"R03 AR066880","funder_id":"https://openalex.org/F4320337362","funder_display_name":"National Institute of Arthritis and Musculoskeletal and Skin Diseases"},{"id":"https://openalex.org/G195998341","display_name":null,"funder_award_id":"P30/CA046934","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G2258634896","display_name":"Biostatistics, Informatics and Bioinformatics Core","funder_award_id":"3p50ca058187-23s1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2795137993","display_name":null,"funder_award_id":"P50 CA058187","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G3378753890","display_name":"University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune Systems","funder_award_id":"3p30ca046934-36s1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6500554123","display_name":null,"funder_award_id":"P30CA046934","funder_id":"https://openalex.org/F4320311054","funder_display_name":"Cancer League of Colorado"}],"funders":[{"id":"https://openalex.org/F4320311054","display_name":"Cancer League of Colorado","ror":"https://ror.org/03cy6xx05"},{"id":"https://openalex.org/F4320311520","display_name":"David F. and Margaret T. Grohne Family Foundation","ror":null},{"id":"https://openalex.org/F4320315960","display_name":"Moore Family Foundation","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337362","display_name":"National Institute of Arthritis and Musculoskeletal and Skin Diseases","ror":"https://ror.org/006zn3t30"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1548406394","https://openalex.org/W1967424408","https://openalex.org/W1974971448","https://openalex.org/W1980740976","https://openalex.org/W1984068087","https://openalex.org/W2022258787","https://openalex.org/W2032211985","https://openalex.org/W2038397847","https://openalex.org/W2048500586","https://openalex.org/W2059145105","https://openalex.org/W2061043894","https://openalex.org/W2072931688","https://openalex.org/W2076357933","https://openalex.org/W2088540000","https://openalex.org/W2098828466","https://openalex.org/W2103441770","https://openalex.org/W2108234281","https://openalex.org/W2112604819","https://openalex.org/W2114029728","https://openalex.org/W2122959041","https://openalex.org/W2140494950","https://openalex.org/W2142879323","https://openalex.org/W2152238559","https://openalex.org/W2155943701","https://openalex.org/W2160995259","https://openalex.org/W2161978970","https://openalex.org/W2162871445","https://openalex.org/W2166262263","https://openalex.org/W2168440186","https://openalex.org/W2171777347","https://openalex.org/W2180481128","https://openalex.org/W2261580330","https://openalex.org/W2885727518","https://openalex.org/W4247053599","https://openalex.org/W6678363132","https://openalex.org/W6692772360"],"related_works":["https://openalex.org/W2407916043","https://openalex.org/W1663620072","https://openalex.org/W2096540669","https://openalex.org/W4376881092","https://openalex.org/W2203677081","https://openalex.org/W2766812143","https://openalex.org/W2168280552","https://openalex.org/W4226377937","https://openalex.org/W2589730460","https://openalex.org/W2322120487"],"abstract_inverted_index":{"OBJECTIVE:":[0],"Currently,":[1],"there":[2],"is":[3,250],"a":[4,8,163,220],"disconnect":[5],"between":[6],"finding":[7],"patient's":[9],"relevant":[10,206],"molecular":[11],"profile":[12],"and":[13,20,64,105,108,114,229],"predicting":[14,59],"actionable":[15,40,180,230],"therapeutics.":[16,41,181],"Here":[17],"we":[18,145],"develop":[19],"implement":[21],"the":[22,70,124,135,141,184,188],"Integrating":[23],"Molecular":[24],"Profiles":[25],"with":[26,86],"Actionable":[27],"Therapeutics":[28],"(IMPACT)":[29],"analysis":[30,173],"pipeline,":[31],"linking":[32],"variants":[33,178,207,228],"detected":[34],"from":[35],"whole-exome":[36,74],"sequencing":[37,75],"(WES)":[38],"to":[39,94,134,154,168,179,213,224,237,242],"METHODS":[42],"AND":[43],"MATERIALS:":[44],"The":[45,78,171],"IMPACT":[46,71,93,112,129,172,197,218],"pipeline":[47,72,174],"contains":[48],"4":[49],"analytical":[50],"modules:":[51],"detecting":[52],"somatic":[53,177,227],"variants,":[54,63],"calling":[55],"copy":[56],"number":[57],"alterations,":[58],"drugs":[60],"against":[61],"deleterious":[62],"analyzing":[65],"tumor":[66,98,189,240],"heterogeneity.":[67],"We":[68,90,157,182,194],"tested":[69],"on":[73],"data":[76],"in":[77,123,187,201],"Cancer":[79],"Genome":[80],"Atlas":[81],"(TCGA)":[82],"lung":[83,126],"adenocarcinoma":[84,127],"samples":[85,99,190,241],"known":[87,120],"EGFR":[88,121,132,138],"mutations.":[89],"also":[91,158,209],"used":[92],"analyze":[95],"melanoma":[96,142],"patient":[97,143,239],"before":[100],"treatment,":[101,104],"after":[102,106,191],"BRAF-inhibitor":[103,155],"BRAF-":[107],"MEK-inhibitor":[109],"treatment.":[110,156],"RESULTS:":[111],"Food":[113],"Drug":[115],"Administration":[116],"(FDA)":[117],"correctly":[118],"identified":[119,146,159],"mutations":[122,133],"TCGA":[125],"samples.":[128],"linked":[130,210],"these":[131,176,211],"appropriate":[136],"FDA-approved":[137],"inhibitors.":[139],"For":[140],"samples,":[144],"NRAS":[147],"p.Q61K":[148],"as":[149,162],"an":[150],"acquired":[151,165],"resistance":[152,166],"mutation":[153,167],"CDKN2A":[160],"deletion":[161],"novel":[164],"BRAFi/MEKi":[169],"inhibition.":[170],"predicts":[175],"observed":[183],"clonal":[185],"dynamic":[186],"various":[192],"treatments.":[193],"showed":[195],"that":[196],"not":[198],"only":[199],"helped":[200],"successful":[202],"prioritization":[203],"of":[204],"clinically":[205],"but":[208],"variations":[212],"possible":[214],"targeted":[215],"therapies.":[216,231],"CONCLUSION:":[217],"provides":[219],"new":[221],"bioinformatics":[222],"strategy":[223],"delineate":[225],"candidate":[226],"This":[232],"approach":[233],"can":[234],"be":[235],"applied":[236],"other":[238],"discover":[243],"effective":[244],"drug":[245],"targets":[246],"for":[247],"personalized":[248],"medicine.IMPACT":[249],"publicly":[251],"available":[252],"at":[253],"http://tanlab.ucdenver.edu/IMPACT.":[254]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":3}],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2025-10-10T00:00:00"}
