{"id":"https://openalex.org/W2278764098","doi":"https://doi.org/10.1093/jamia/ocv172","title":"A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records","display_name":"A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records","publication_year":2016,"publication_date":"2016-01-17","ids":{"openalex":"https://openalex.org/W2278764098","doi":"https://doi.org/10.1093/jamia/ocv172","mag":"2278764098","pmid":"https://pubmed.ncbi.nlm.nih.gov/26911818"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocv172","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocv172","pdf_url":"https://academic.oup.com/jamia/article-pdf/23/5/934/7050627/ocv172.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/23/5/934/7050627/ocv172.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038933482","display_name":"Tasnia Tahsin","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tasnia Tahsin","raw_affiliation_strings":["Department of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040948702","display_name":"Davy Weissenbacher","orcid":"https://orcid.org/0000-0001-8331-3675"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Davy Weissenbacher","raw_affiliation_strings":["Department of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032738234","display_name":"Robert Rivera","orcid":"https://orcid.org/0000-0003-1511-9517"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Rivera","raw_affiliation_strings":["Department of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111972769","display_name":"R. Suzanne Beard","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rachel Beard","raw_affiliation_strings":["Department of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010342977","display_name":"Mari Firago","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mari Firago","raw_affiliation_strings":["Department of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031917808","display_name":"Garrick Wallstrom","orcid":"https://orcid.org/0000-0002-5202-6742"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Garrick Wallstrom","raw_affiliation_strings":["Department of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050090926","display_name":"Matthew Scotch","orcid":"https://orcid.org/0000-0001-5100-9724"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew Scotch","raw_affiliation_strings":["Department of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022014033","display_name":"Graciela Gonzalez\u2010Hernandez","orcid":"https://orcid.org/0000-0002-6416-9556"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Graciela Gonzalez","raw_affiliation_strings":["Department of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA","institution_ids":["https://openalex.org/I55732556"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5038933482"],"corresponding_institution_ids":["https://openalex.org/I55732556"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":3.1007,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.91091102,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"23","issue":"5","first_page":"934","last_page":"941"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11819","display_name":"Data-Driven Disease Surveillance","score":0.6938999891281128,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11819","display_name":"Data-Driven Disease Surveillance","score":0.6938999891281128,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.07450000196695328,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":0.06710000336170197,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/geospatial-analysis","display_name":"Geospatial analysis","score":0.8808972835540771},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.7916386723518372},{"id":"https://openalex.org/keywords/geospatial-metadata","display_name":"Geospatial metadata","score":0.7787786722183228},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.7628123760223389},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6771869659423828},{"id":"https://openalex.org/keywords/geographic-coordinate-system","display_name":"Geographic coordinate system","score":0.4964974522590637},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4882092773914337},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.46244555711746216},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3700277805328369},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.23477429151535034},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.2111501395702362},{"id":"https://openalex.org/keywords/metadata-repository","display_name":"Metadata repository","score":0.15327176451683044},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.12902545928955078},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10991740226745605},{"id":"https://openalex.org/keywords/meta-data-services","display_name":"Meta Data Services","score":0.07200905680656433}],"concepts":[{"id":"https://openalex.org/C9770341","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Geospatial analysis","level":2,"score":0.8808972835540771},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.7916386723518372},{"id":"https://openalex.org/C193150823","wikidata":"https://www.wikidata.org/wiki/Q1477538","display_name":"Geospatial metadata","level":5,"score":0.7787786722183228},{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.7628123760223389},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6771869659423828},{"id":"https://openalex.org/C123046963","wikidata":"https://www.wikidata.org/wiki/Q22664","display_name":"Geographic coordinate system","level":2,"score":0.4964974522590637},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4882092773914337},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.46244555711746216},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3700277805328369},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.23477429151535034},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.2111501395702362},{"id":"https://openalex.org/C153048206","wikidata":"https://www.wikidata.org/wiki/Q3454922","display_name":"Metadata repository","level":3,"score":0.15327176451683044},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.12902545928955078},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10991740226745605},{"id":"https://openalex.org/C136976847","wikidata":"https://www.wikidata.org/wiki/Q6822297","display_name":"Meta Data Services","level":4,"score":0.07200905680656433},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007251","descriptor_name":"Influenza, Human","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D007251","descriptor_name":"Influenza, Human","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D007251","descriptor_name":"Influenza, Human","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D007251","descriptor_name":"Influenza, Human","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D007251","descriptor_name":"Influenza, Human","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009980","descriptor_name":"Influenza A virus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009980","descriptor_name":"Influenza A virus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009980","descriptor_name":"Influenza A virus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009980","descriptor_name":"Influenza A virus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009980","descriptor_name":"Influenza A virus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015047","descriptor_name":"Zoonoses","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D015047","descriptor_name":"Zoonoses","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D015047","descriptor_name":"Zoonoses","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D015047","descriptor_name":"Zoonoses","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D015047","descriptor_name":"Zoonoses","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062306","descriptor_name":"Geography, Medical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062306","descriptor_name":"Geography, Medical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062306","descriptor_name":"Geography, Medical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062306","descriptor_name":"Geography, Medical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062306","descriptor_name":"Geography, Medical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/jamia/ocv172","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocv172","pdf_url":"https://academic.oup.com/jamia/article-pdf/23/5/934/7050627/ocv172.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:26911818","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26911818","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:europepmc.org:4470252","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4997033","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:jaminfo:23/5/934","is_oa":false,"landing_page_url":"http://jamia.oxfordjournals.org/cgi/content/short/23/5/934","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/jamia/ocv172","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocv172","pdf_url":"https://academic.oup.com/jamia/article-pdf/23/5/934/7050627/ocv172.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2278764098.pdf","grobid_xml":"https://content.openalex.org/works/W2278764098.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W4508078","https://openalex.org/W79139011","https://openalex.org/W189548156","https://openalex.org/W1550565683","https://openalex.org/W1961588674","https://openalex.org/W1973406306","https://openalex.org/W1981581556","https://openalex.org/W1984399847","https://openalex.org/W1986040699","https://openalex.org/W1986353013","https://openalex.org/W1990139299","https://openalex.org/W2063280109","https://openalex.org/W2077267646","https://openalex.org/W2090183117","https://openalex.org/W2091525712","https://openalex.org/W2120545936","https://openalex.org/W2121527356","https://openalex.org/W2121909584","https://openalex.org/W2122496795","https://openalex.org/W2134933826","https://openalex.org/W2136198635","https://openalex.org/W2140291614","https://openalex.org/W2152679852","https://openalex.org/W2156804059","https://openalex.org/W2164545729","https://openalex.org/W2753318643","https://openalex.org/W4242729757","https://openalex.org/W6607803572","https://openalex.org/W6640845855","https://openalex.org/W6680915985","https://openalex.org/W6691573161","https://openalex.org/W6691778492"],"related_works":["https://openalex.org/W2373398412","https://openalex.org/W2374379029","https://openalex.org/W2357597986","https://openalex.org/W2351854916","https://openalex.org/W2389827836","https://openalex.org/W2359241271","https://openalex.org/W1503116306","https://openalex.org/W4251339169","https://openalex.org/W1980255893","https://openalex.org/W1029779541"],"abstract_inverted_index":{"OBJECTIVE:":[0],"The":[1,100],"metadata":[2,25,75,236],"reflecting":[3],"the":[4,7,64,67,105,138,145,158,184,187,207,223,228],"location":[5],"of":[6,11,66,104,133,150,160,177,186,199,230],"infected":[8],"host":[9],"(LOIH)":[10],"virus":[12,226],"sequences":[13],"in":[14,94],"GenBank":[15,61,77,135,155,181,220],"often":[16],"lacks":[17],"specificity.":[18],"This":[19],"work":[20],"seeks":[21],"to":[22,39,63,81,119,157,163,183,227],"enhance":[23],"this":[24],"by":[26,84,195],"extracting":[27],"more":[28],"specific":[29],"geographic":[30,88],"information":[31,56,89,238],"from":[32,45,76,90,111,240],"related":[33,95,241],"full-text":[34,96,242],"articles":[35],"and":[36,79,92,117,148,167,205,237],"mapping":[37],"them":[38],"their":[40,120,161,231],"latitude/longitudes":[41,65,159],"using":[42],"knowledge":[43],"derived":[44],"external":[46],"geographical":[47],"databases.":[48],"MATERIALS":[49],"AND":[50],"METHODS:":[51],"We":[52,123,143],"developed":[53],"a":[54,128,174],"rule-based":[55],"extraction":[57],"framework":[58],"for":[59,137,153,179,210,218,222],"linking":[60,154,180,219],"records":[62,78,136,156,182,221],"LOIH.":[68,188],"Our":[69,171,213],"system":[70,152,172,214],"first":[71],"extracts":[72],"existing":[73],"geospatial":[74,200],"attempts":[80],"improve":[82],"it":[83,190],"seeking":[85],"additional,":[86],"relevant":[87],"text":[91],"tables":[93],"PubMed":[97],"Central":[98],"articles.":[99,243],"final":[101],"extracted":[102,239],"locations":[103],"records,":[106],"based":[107,233],"on":[108,127,234],"data":[109],"assimilated":[110],"these":[112],"sources,":[113],"are":[114],"then":[115],"disambiguated":[116],"mapped":[118],"respective":[121],"geo-coordinates.":[122],"evaluated":[124],"our":[125,151,197],"approach":[126],"manually":[129],"annotated":[130],"dataset":[131],"comprising":[132],"5728":[134],"influenza":[139,224],"A":[140,225],"virus.":[141],"RESULTS:":[142],"found":[144],"precision,":[146],"recall,":[147],"f-measure":[149],"LOIH":[162,232],"be":[164,192],"0.832,":[165],"0.967,":[166],"0.894,":[168],"respectively.":[169],"DISCUSSION:":[170],"had":[173],"high":[175],"level":[176],"accuracy":[178],"geo-coordinates":[185,229],"However,":[189],"can":[191],"further":[193],"improved":[194],"expanding":[196],"database":[198],"data,":[201],"incorporating":[202],"spell":[203],"correction,":[204],"enhancing":[206],"rules":[208],"used":[209],"extraction.":[211],"CONCLUSION:":[212],"performs":[215],"reasonably":[216],"well":[217],"record":[235]},"counts_by_year":[{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
