{"id":"https://openalex.org/W2156933902","doi":"https://doi.org/10.1093/jamia/ocv047","title":"The NIH BD2K center for big data in translational genomics","display_name":"The NIH BD2K center for big data in translational genomics","publication_year":2015,"publication_date":"2015-07-14","ids":{"openalex":"https://openalex.org/W2156933902","doi":"https://doi.org/10.1093/jamia/ocv047","mag":"2156933902","pmid":"https://pubmed.ncbi.nlm.nih.gov/26174866"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocv047","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocv047","pdf_url":"https://academic.oup.com/jamia/article-pdf/22/6/1143/34146362/ocv047.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/22/6/1143/34146362/ocv047.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061203088","display_name":"Benedict Paten","orcid":"https://orcid.org/0000-0001-8863-3539"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Benedict Paten","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054009720","display_name":"Mark Diekhans","orcid":"https://orcid.org/0000-0002-0430-0989"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Diekhans","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033023115","display_name":"Brian Druker","orcid":"https://orcid.org/0000-0001-8331-8206"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian J Druker","raw_affiliation_strings":["Knight Cancer Institute, Oregon Health & Science University, Portland, OR, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Knight Cancer Institute, Oregon Health & Science University, Portland, OR, USA","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069348884","display_name":"Stephen Friend","orcid":"https://orcid.org/0000-0002-0830-7600"},"institutions":[{"id":"https://openalex.org/I1323236076","display_name":"Sage Bionetworks","ror":"https://ror.org/049ncjx51","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1323236076"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen Friend","raw_affiliation_strings":["Sage Bionetworks, Fairview Ave North, Seattle 98109, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sage Bionetworks, Fairview Ave North, Seattle 98109, WA, USA","institution_ids":["https://openalex.org/I1323236076"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080308005","display_name":"Justin Guinney","orcid":"https://orcid.org/0000-0003-1477-1888"},"institutions":[{"id":"https://openalex.org/I1323236076","display_name":"Sage Bionetworks","ror":"https://ror.org/049ncjx51","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1323236076"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin Guinney","raw_affiliation_strings":["Sage Bionetworks, Fairview Ave North, Seattle 98109, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sage Bionetworks, Fairview Ave North, Seattle 98109, WA, USA","institution_ids":["https://openalex.org/I1323236076"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087415046","display_name":"N.C. Gassner","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nadine Gassner","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052599603","display_name":"Mitchell Guttman","orcid":"https://orcid.org/0000-0003-4748-9352"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mitchell Guttman","raw_affiliation_strings":["Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006195366","display_name":"W. James Kent","orcid":"https://orcid.org/0000-0002-2564-9303"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W James Kent","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023926802","display_name":"Patrick E. Mantey","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Patrick Mantey","raw_affiliation_strings":["Jack Baskin School of Engineering, University of California, Santa Cruz, CA, USA","UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jack Baskin School of Engineering, University of California, Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Adam A Margolin","orcid":null},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam A Margolin","raw_affiliation_strings":["Computational Biology Program, Oregon Health & Science University, Portland, OR, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Program, Oregon Health & Science University, Portland, OR, USA","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074079487","display_name":"Matt D. Massie","orcid":null},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matt Massie","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of California, Berkeley, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of California, Berkeley, CA, USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031360521","display_name":"Adam M. Novak","orcid":"https://orcid.org/0000-0001-5828-047X"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam M Novak","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008077599","display_name":"Frank Austin Nothaft","orcid":"https://orcid.org/0000-0002-7729-7055"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Frank Nothaft","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of California, Berkeley, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of California, Berkeley, CA, USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020008219","display_name":"Lior Pachter","orcid":"https://orcid.org/0000-0002-9164-6231"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lior Pachter","raw_affiliation_strings":["Department of Mathematics, University of California Berkeley, Berkeley, CA, USA","Department of Molecular & Cellular Biology, University of California Berkeley, Berkeley, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of California Berkeley, Berkeley, CA, USA","institution_ids":["https://openalex.org/I95457486"]},{"raw_affiliation_string":"Department of Molecular & Cellular Biology, University of California Berkeley, Berkeley, CA, USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077202069","display_name":"David A. Patterson","orcid":"https://orcid.org/0000-0003-0902-7093"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Patterson","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of California, Berkeley, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of California, Berkeley, CA, USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042286221","display_name":"Maciej Smuga-Otto","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maciej Smuga-Otto","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029096739","display_name":"Joshua M. Stuart","orcid":"https://orcid.org/0000-0002-2171-565X"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua M Stuart","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110309908","display_name":"Laura van\u2019t Veer","orcid":null},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Laura Van\u2019t Veer","raw_affiliation_strings":["Department of Laboratory Medicine, University of California, San Francisco, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Laboratory Medicine, University of California, San Francisco, CA, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056820199","display_name":"B Wold","orcid":"https://orcid.org/0000-0003-3235-8130"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Barbara Wold","raw_affiliation_strings":["Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090849321","display_name":"David Haussler","orcid":"https://orcid.org/0000-0003-1533-4575"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David Haussler","raw_affiliation_strings":["Howard Hughes Medical Institute, Bethesda, MD, USA","UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Howard Hughes Medical Institute, Bethesda, MD, USA","institution_ids":["https://openalex.org/I1344073410"]},{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":20,"corresponding_author_ids":["https://openalex.org/A5061203088","https://openalex.org/A5090849321"],"corresponding_institution_ids":["https://openalex.org/I1344073410","https://openalex.org/I185103710"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":2.949,"has_fulltext":true,"cited_by_count":36,"citation_normalized_percentile":{"value":0.912197,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"22","issue":"6","first_page":"1143","last_page":"1147"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.7150716781616211},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.6916977167129517},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6176867485046387},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.600745677947998},{"id":"https://openalex.org/keywords/data-sharing","display_name":"Data sharing","score":0.5765023827552795},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.5761675238609314},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.5719886422157288},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5457817316055298},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.518604040145874},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.4481672942638397},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4112699627876282},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.29359906911849976},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.21880203485488892},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14488479495048523},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.14045169949531555},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.13983753323554993},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.1113743782043457},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10564911365509033},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.09849876165390015},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.09223052859306335}],"concepts":[{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.7150716781616211},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.6916977167129517},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6176867485046387},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.600745677947998},{"id":"https://openalex.org/C2779965156","wikidata":"https://www.wikidata.org/wiki/Q5227350","display_name":"Data sharing","level":3,"score":0.5765023827552795},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.5761675238609314},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.5719886422157288},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5457817316055298},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.518604040145874},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.4481672942638397},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4112699627876282},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.29359906911849976},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.21880203485488892},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14488479495048523},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.14045169949531555},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.13983753323554993},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.1113743782043457},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10564911365509033},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.09849876165390015},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.09223052859306335},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009316","descriptor_name":"National Institutes of Health (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009316","descriptor_name":"National Institutes of Health (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009316","descriptor_name":"National Institutes of Health (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/jamia/ocv047","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocv047","pdf_url":"https://academic.oup.com/jamia/article-pdf/22/6/1143/34146362/ocv047.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:26174866","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26174866","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:authors.library.caltech.edu:58956","is_oa":false,"landing_page_url":"https://resolver.caltech.edu/CaltechAUTHORS:20150721-085701041","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:ark:/13030/qt4m10s6ms","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt4m10s6ms","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/4m10s6ms","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of the American Medical Informatics Association, vol 22, iss 6","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5009913","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5009913","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/jamia/ocv047","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocv047","pdf_url":"https://academic.oup.com/jamia/article-pdf/22/6/1143/34146362/ocv047.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4417639437","display_name":null,"funder_award_id":"U54HG007990","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G526700612","display_name":null,"funder_award_id":"U54HG007990","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2156933902.pdf","grobid_xml":"https://content.openalex.org/works/W2156933902.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W2120211169","https://openalex.org/W2121362757","https://openalex.org/W2131966673","https://openalex.org/W2158485828","https://openalex.org/W2165064122","https://openalex.org/W2168909179","https://openalex.org/W2189371416","https://openalex.org/W2917738795"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2011676020","https://openalex.org/W2000169967"],"abstract_inverted_index":{"The":[0],"world's":[1,91],"genomics":[2],"data":[3,30,62,139],"will":[4,15,27,111],"never":[5],"be":[6,16],"stored":[7],"in":[8,21,37,128],"a":[9,66,113,129],"single":[10],"repository":[11],"-":[12],"rather,":[13],"it":[14],"distributed":[17],"among":[18,63],"many":[19,22,64],"sites":[20,41,65],"countries.":[23],"No":[24],"one":[25],"site":[26],"have":[28],"enough":[29],"to":[31,34,57,88],"explain":[32],"genotype":[33],"phenotype":[35],"relationships":[36],"rare":[38],"diseases;":[39],"therefore,":[40],"must":[42,51],"share":[43],"data.":[44],"To":[45],"accomplish":[46],"this,":[47],"the":[48,70,80,90,123],"genetics":[49],"community":[50],"forge":[52],"common":[53],"standards":[54],"and":[55,60,75,137,147],"protocols":[56],"make":[58],"sharing":[59],"computing":[61],"seamless":[67],"activity.":[68],"Through":[69,134],"Global":[71],"Alliance":[72],"for":[73],"Genomics":[74],"Health,":[76],"we":[77,96,120,142],"are":[78,97,121,143],"pioneering":[79],"development":[81],"of":[82,125,132],"shared":[83],"application":[84],"programming":[85],"interfaces":[86],"(APIs)":[87],"connect":[89],"genome":[92,115],"repositories.":[93],"In":[94],"parallel,":[95],"developing":[98],"an":[99],"open":[100],"source":[101],"software":[102,127],"stack":[103],"(ADAM)":[104],"that":[105],"uses":[106],"these":[107],"APIs.":[108],"This":[109],"combination":[110],"create":[112],"cohesive":[114],"informatics":[116],"ecosystem.":[117],"Using":[118],"containers,":[119],"facilitating":[122],"deployment":[124],"this":[126],"diverse":[130],"array":[131],"environments.":[133],"benchmarking":[135],"efforts":[136],"big":[138],"driver":[140],"projects,":[141],"ensuring":[144],"ADAM's":[145],"performance":[146],"utility.":[148]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":3}],"updated_date":"2026-05-05T08:41:31.759640","created_date":"2025-10-10T00:00:00"}
