{"id":"https://openalex.org/W2115698373","doi":"https://doi.org/10.1093/jamia/ocv001","title":"Development of data representation standards by the human proteome organization proteomics standards initiative","display_name":"Development of data representation standards by the human proteome organization proteomics standards initiative","publication_year":2015,"publication_date":"2015-02-28","ids":{"openalex":"https://openalex.org/W2115698373","doi":"https://doi.org/10.1093/jamia/ocv001","mag":"2115698373","pmid":"https://pubmed.ncbi.nlm.nih.gov/25726569"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocv001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocv001","pdf_url":"https://academic.oup.com/jamia/article-pdf/22/3/495/34145865/ocv001.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jamia/article-pdf/22/3/495/34145865/ocv001.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070102563","display_name":"Eric W. Deutsch","orcid":"https://orcid.org/0000-0001-8732-0928"},"institutions":[{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]},{"id":"https://openalex.org/I58610484","display_name":"Seattle University","ror":"https://ror.org/02jqc0m91","country_code":"US","type":"education","lineage":["https://openalex.org/I58610484"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Eric W Deutsch","raw_affiliation_strings":["Institute for Systems Biology, Seattle, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Systems Biology, Seattle, USA","institution_ids":["https://openalex.org/I3148997608","https://openalex.org/I58610484"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066656748","display_name":"Juan Pablo Albar","orcid":null},"institutions":[{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Juan Pablo Albar","raw_affiliation_strings":["Died July 18, 2014","ProteoRed Consortium, Spanish National Institute of Proteomics, Madrid, Spain","Proteomics Facility, Centro Nacional de Biotecnolog\u00eda - CSIC, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Died July 18, 2014","institution_ids":[]},{"raw_affiliation_string":"ProteoRed Consortium, Spanish National Institute of Proteomics, Madrid, Spain","institution_ids":[]},{"raw_affiliation_string":"Proteomics Facility, Centro Nacional de Biotecnolog\u00eda - CSIC, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074376117","display_name":"Pierre\u2010Alain Binz","orcid":"https://orcid.org/0000-0002-0045-7698"},"institutions":[{"id":"https://openalex.org/I2802229882","display_name":"University Hospital of Lausanne","ror":"https://ror.org/05a353079","country_code":"CH","type":"funder","lineage":["https://openalex.org/I2802229882"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Pierre-Alain Binz","raw_affiliation_strings":["CHUV Centre Hospitalier Universitaire Vaudois, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CHUV Centre Hospitalier Universitaire Vaudois, Lausanne, Switzerland","institution_ids":["https://openalex.org/I2802229882"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087611420","display_name":"Martin Eisenacher","orcid":"https://orcid.org/0000-0003-2687-7444"},"institutions":[{"id":"https://openalex.org/I904495901","display_name":"Ruhr University Bochum","ror":"https://ror.org/04tsk2644","country_code":"DE","type":"education","lineage":["https://openalex.org/I904495901"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Eisenacher","raw_affiliation_strings":["Medizinisches Proteom Center (MPC), Ruhr-Universit\u00e4t Bochum, Bochum, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medizinisches Proteom Center (MPC), Ruhr-Universit\u00e4t Bochum, Bochum, Germany","institution_ids":["https://openalex.org/I904495901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073268875","display_name":"Andrew R. Jones","orcid":"https://orcid.org/0000-0001-6118-9327"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew R Jones","raw_affiliation_strings":["Institute of Integrative Biology, University of Liverpool, Liverpool, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Integrative Biology, University of Liverpool, Liverpool, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056615511","display_name":"Gerhard Mayer","orcid":"https://orcid.org/0000-0002-1767-2343"},"institutions":[{"id":"https://openalex.org/I904495901","display_name":"Ruhr University Bochum","ror":"https://ror.org/04tsk2644","country_code":"DE","type":"education","lineage":["https://openalex.org/I904495901"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gerhard Mayer","raw_affiliation_strings":["Medizinisches Proteom Center (MPC), Ruhr-Universit\u00e4t Bochum, Bochum, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medizinisches Proteom Center (MPC), Ruhr-Universit\u00e4t Bochum, Bochum, Germany","institution_ids":["https://openalex.org/I904495901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008478119","display_name":"Gilbert S. Omenn","orcid":"https://orcid.org/0000-0002-8976-6074"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I58610484","display_name":"Seattle University","ror":"https://ror.org/02jqc0m91","country_code":"US","type":"education","lineage":["https://openalex.org/I58610484"]},{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gilbert S Omenn","raw_affiliation_strings":["Department of Computational Medicine & Bioinformatics, University of Michigan, Ann Arbor, USA","Institute for Systems Biology, Seattle, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Medicine & Bioinformatics, University of Michigan, Ann Arbor, USA","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Institute for Systems Biology, Seattle, USA","institution_ids":["https://openalex.org/I3148997608","https://openalex.org/I58610484"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026050023","display_name":"Sandra Orchard","orcid":"https://orcid.org/0000-0002-8878-3972"},"institutions":[{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sandra Orchard","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044603792","display_name":"Juan Antonio Vizca\u00edno","orcid":"https://orcid.org/0000-0002-3905-4335"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Juan Antonio Vizca\u00edno","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066783652","display_name":"Henning Hermjakob","orcid":"https://orcid.org/0000-0001-8479-0262"},"institutions":[{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Henning Hermjakob","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5070102563"],"corresponding_institution_ids":["https://openalex.org/I3148997608","https://openalex.org/I58610484"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":{"value":3967,"currency":"USD","value_usd":3967},"fwci":5.9398,"has_fulltext":true,"cited_by_count":59,"citation_normalized_percentile":{"value":0.97391807,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"22","issue":"3","first_page":"495","last_page":"506"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9089999794960022,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9089999794960022,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.01489999983459711,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.00989999994635582,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/deliverable","display_name":"Deliverable","score":0.8200280666351318},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6060659289360046},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.45152395963668823},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4298175573348999},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.16775402426719666},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.14082416892051697}],"concepts":[{"id":"https://openalex.org/C21883318","wikidata":"https://www.wikidata.org/wiki/Q2297847","display_name":"Deliverable","level":2,"score":0.8200280666351318},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6060659289360046},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.45152395963668823},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4298175573348999},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.16775402426719666},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.14082416892051697},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012955","descriptor_name":"Societies, Medical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012955","descriptor_name":"Societies, Medical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012955","descriptor_name":"Societies, Medical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012955","descriptor_name":"Societies, Medical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012955","descriptor_name":"Societies, Medical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012955","descriptor_name":"Societies, Medical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D017408","descriptor_name":"Guidelines as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017408","descriptor_name":"Guidelines as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017408","descriptor_name":"Guidelines as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017408","descriptor_name":"Guidelines as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017408","descriptor_name":"Guidelines as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017408","descriptor_name":"Guidelines as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/jamia/ocv001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocv001","pdf_url":"https://academic.oup.com/jamia/article-pdf/22/3/495/34145865/ocv001.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:25726569","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25726569","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:serval.unil.ch:BIB_ADB17A5DA0D9","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_ADB17A5DA0D9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : Jamia, vol. 22, no. 3, pp. 495-506","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:iris.unil.ch:iris/135263","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/135263","pdf_url":"https://iris.unil.ch/bitstreams/265987ed-b011-45dd-bdc6-0b6c62cec579/download","source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"review article"},{"id":"pmh:oai:doc.rero.ch:289719","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:pubmedcentral.nih.gov:4457114","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4457114","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/jamia/ocv001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocv001","pdf_url":"https://academic.oup.com/jamia/article-pdf/22/3/495/34145865/ocv001.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.5}],"awards":[{"id":"https://openalex.org/G1443135587","display_name":null,"funder_award_id":"WT101477MA","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G1986666941","display_name":"PROCESS - Proteomics data Collection, Software and Standards to support open access and long term management of data","funder_award_id":"BB/K01997X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G2393153329","display_name":null,"funder_award_id":"262067","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2579040122","display_name":null,"funder_award_id":"EU FP7","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2627982309","display_name":null,"funder_award_id":"BB/K01997X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G3182200649","display_name":null,"funder_award_id":"2P50GM075647","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3198396954","display_name":null,"funder_award_id":"BB/K020145/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4038494512","display_name":null,"funder_award_id":"241481","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4399744071","display_name":null,"funder_award_id":"RC2HG005805","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G5712212442","display_name":null,"funder_award_id":"260558","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6266321432","display_name":null,"funder_award_id":"HHSN268201000035C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6519275499","display_name":null,"funder_award_id":"HHSN268201000035C","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G7724812965","display_name":null,"funder_award_id":"R01GM087221","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8352735058","display_name":null,"funder_award_id":"R01GM087221","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321900","display_name":"Deutsche Gesetzliche Unfallversicherung","ror":"https://ror.org/01agh0847"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2115698373.pdf","grobid_xml":"https://content.openalex.org/works/W2115698373.grobid-xml"},"referenced_works_count":84,"referenced_works":["https://openalex.org/W1544923801","https://openalex.org/W1709592756","https://openalex.org/W1900457299","https://openalex.org/W1944989862","https://openalex.org/W1964336313","https://openalex.org/W1964647825","https://openalex.org/W1966212893","https://openalex.org/W1969625752","https://openalex.org/W1971091652","https://openalex.org/W1975875968","https://openalex.org/W1989277387","https://openalex.org/W1989924812","https://openalex.org/W1995683190","https://openalex.org/W1998425197","https://openalex.org/W1999180852","https://openalex.org/W1999615477","https://openalex.org/W1999751815","https://openalex.org/W2001230320","https://openalex.org/W2005710564","https://openalex.org/W2006933206","https://openalex.org/W2007843173","https://openalex.org/W2010699022","https://openalex.org/W2012440826","https://openalex.org/W2013009523","https://openalex.org/W2018518196","https://openalex.org/W2023010129","https://openalex.org/W2027974246","https://openalex.org/W2030705077","https://openalex.org/W2032425899","https://openalex.org/W2037028472","https://openalex.org/W2037744323","https://openalex.org/W2043764521","https://openalex.org/W2043964720","https://openalex.org/W2045717408","https://openalex.org/W2046766973","https://openalex.org/W2046872827","https://openalex.org/W2047356598","https://openalex.org/W2049625541","https://openalex.org/W2050554833","https://openalex.org/W2053655123","https://openalex.org/W2054684823","https://openalex.org/W2055029627","https://openalex.org/W2057761395","https://openalex.org/W2060769471","https://openalex.org/W2073884867","https://openalex.org/W2074956188","https://openalex.org/W2077545398","https://openalex.org/W2079843936","https://openalex.org/W2080447445","https://openalex.org/W2081465448","https://openalex.org/W2104764521","https://openalex.org/W2105084411","https://openalex.org/W2110017950","https://openalex.org/W2110603815","https://openalex.org/W2111127781","https://openalex.org/W2111846704","https://openalex.org/W2113142309","https://openalex.org/W2117300383","https://openalex.org/W2117900830","https://openalex.org/W2118721685","https://openalex.org/W2123152121","https://openalex.org/W2124811352","https://openalex.org/W2129272652","https://openalex.org/W2130542009","https://openalex.org/W2130810176","https://openalex.org/W2132582966","https://openalex.org/W2134604442","https://openalex.org/W2146103026","https://openalex.org/W2149384852","https://openalex.org/W2155671773","https://openalex.org/W2155792164","https://openalex.org/W2158439765","https://openalex.org/W2159675211","https://openalex.org/W2163917093","https://openalex.org/W2166377314","https://openalex.org/W2167089719","https://openalex.org/W2169477254","https://openalex.org/W2403542553","https://openalex.org/W2417588076","https://openalex.org/W2582743722","https://openalex.org/W4237335579","https://openalex.org/W4242769232","https://openalex.org/W4250839450","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2495597051","https://openalex.org/W4210916034","https://openalex.org/W4242627426","https://openalex.org/W2299603432","https://openalex.org/W1031561789","https://openalex.org/W2614697689","https://openalex.org/W2750907007","https://openalex.org/W2575875457"],"abstract_inverted_index":{"OBJECTIVE:":[0],"To":[1],"describe":[2],"the":[3,6,12,16,19,27,31,36,45,60,83,90,100,195,208,215,224,233,249,273],"goals":[4],"of":[5,11,30,55,89,116,154,165,174,222,235,275],"Proteomics":[7],"Standards":[8],"Initiative":[9],"(PSI)":[10],"Human":[13],"Proteome":[14],"Organization,":[15],"methods":[17],"that":[18,57,112,187,189,207,230],"PSI":[20,51,149,225,286],"has":[21,52,150,226],"employed":[22],"to":[23,107,120,243,248,251,280],"create":[24],"data":[25,67,139,239,244,268],"standards,":[26],"resulting":[28],"output":[29],"PSI,":[32],"lessons":[33],"learned":[34],"from":[35],"PSI's":[37],"evolution,":[38],"and":[39,42,72,75,85,96,126,170,178,197,203,241,259,261,277,282],"future":[40,250],"directions":[41],"synergies":[43],"for":[44,255,263],"group.":[46,61],"MATERIALS":[47],"AND":[48],"METHODS:":[49],"The":[50,148,285],"5":[53],"categories":[54],"deliverables":[56,79],"have":[58,124,183,231],"guided":[59],"These":[62,78],"are":[63,80,105,191],"minimum":[64,128],"information":[65,129,133],"guidelines,":[66],"formats,":[68],"controlled":[69,185],"vocabularies,":[70],"resources":[71],"software":[73,201],"tools,":[74],"dissemination":[76,204],"activities.":[77],"produced":[81,125,151,184,227],"via":[82,142],"leadership":[84],"working":[86,101],"group":[87],"organization":[88],"initiative,":[91],"driven":[92],"by":[93,214,237],"frequent":[94],"workshops":[95],"ongoing":[97],"communication":[98],"within":[99],"groups.":[102],"Official":[103],"standards":[104,209,229,254],"subjected":[106],"a":[108,152],"rigorous":[109],"document":[110],"process":[111],"includes":[113],"several":[114],"levels":[115],"peer":[117],"review":[118],"prior":[119],"release.":[121],"RESULTS:":[122],"We":[123,182,246],"published":[127],"guidelines":[130],"describing":[131],"what":[132],"should":[134],"be":[135,212,289],"provided":[136],"when":[137],"making":[138],"public,":[140],"either":[141],"public":[143],"repositories":[144],"or":[145],"other":[146,266],"means.":[147],"series":[153],"standard":[155],"formats":[156,196],"covering":[157],"mass":[158,161],"spectrometer":[159,162],"input,":[160],"output,":[163],"results":[164],"informatics":[166],"analysis":[167],"(both":[168],"qualitative":[169],"quantitative":[171],"analyses),":[172],"reports":[173],"molecular":[175],"interaction":[176],"data,":[177],"gel":[179],"electrophoresis":[180],"analyses.":[181],"vocabularies":[186],"ensure":[188],"concepts":[190],"uniformly":[192],"annotated":[193],"in":[194,199],"engaged":[198],"extensive":[200],"development":[202],"efforts":[205],"so":[206],"can":[210,288],"efficiently":[211],"used":[213],"community.Conclusion":[216],"In":[217],"its":[218],"first":[219],"dozen":[220],"years":[221],"operation,":[223],"many":[228],"accelerated":[232],"field":[234],"proteomics":[236,257,278],"facilitating":[238],"exchange":[240],"deposition":[242],"repositories.":[245],"look":[247],"continue":[252],"developing":[253],"new":[256],"technologies":[258],"workflows":[260],"mechanisms":[262],"integration":[264],"with":[265],"omics":[267],"types.":[269],"Our":[270],"products":[271],"facilitate":[272],"translation":[274],"genomics":[276],"findings":[279],"clinical":[281],"biological":[283],"phenotypes.":[284],"website":[287],"accessed":[290],"at":[291],"http://www.psidev.info.":[292]},"counts_by_year":[{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":13},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":6}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
