{"id":"https://openalex.org/W7117158505","doi":"https://doi.org/10.1093/jamia/ocaf223","title":"AutoReporter: development of an artificial intelligence tool for automated assessment of research reporting guideline adherence","display_name":"AutoReporter: development of an artificial intelligence tool for automated assessment of research reporting guideline adherence","publication_year":2025,"publication_date":"2025-12-09","ids":{"openalex":"https://openalex.org/W7117158505","doi":"https://doi.org/10.1093/jamia/ocaf223","pmid":"https://pubmed.ncbi.nlm.nih.gov/41435508"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocaf223","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocaf223","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5121171964","display_name":"David Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"David Chen","raw_affiliation_strings":["Princess Margaret Cancer Centre, Radiation Medicine Program , Toronto, ON M5G 2C4,","Temerty Faculty of Medicine, University of Toronto , Toronto, ON M5S 3K3,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Princess Margaret Cancer Centre, Radiation Medicine Program , Toronto, ON M5G 2C4,","institution_ids":["https://openalex.org/I2802654988"]},{"raw_affiliation_string":"Temerty Faculty of Medicine, University of Toronto , Toronto, ON M5S 3K3,","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5121186671","display_name":"Patrick Li","orcid":null},"institutions":[{"id":"https://openalex.org/I98251732","display_name":"McMaster University","ror":"https://ror.org/02fa3aq29","country_code":"CA","type":"education","lineage":["https://openalex.org/I98251732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Patrick Li","raw_affiliation_strings":["Faculty of Engineering, McMaster University , Hamilton, ON L8S 4M3,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Engineering, McMaster University , Hamilton, ON L8S 4M3,","institution_ids":["https://openalex.org/I98251732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117216940","display_name":"Ealia Khoshkish","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ealia Khoshkish","raw_affiliation_strings":["Temerty Faculty of Medicine, University of Toronto , Toronto, ON M5S 3K3,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Temerty Faculty of Medicine, University of Toronto , Toronto, ON M5S 3K3,","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5121171372","display_name":"Seungmin Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Seungmin Lee","raw_affiliation_strings":["Temerty Faculty of Medicine, University of Toronto , Toronto, ON M5S 3K3,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Temerty Faculty of Medicine, University of Toronto , Toronto, ON M5S 3K3,","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5121195326","display_name":"Tony Ning","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Tony Ning","raw_affiliation_strings":["Temerty Faculty of Medicine, University of Toronto , Toronto, ON M5S 3K3,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Temerty Faculty of Medicine, University of Toronto , Toronto, ON M5S 3K3,","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101578279","display_name":"Umair Tahir","orcid":"https://orcid.org/0009-0005-1913-7335"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Umair Tahir","raw_affiliation_strings":["Temerty Faculty of Medicine, University of Toronto , Toronto, ON M5S 3K3,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Temerty Faculty of Medicine, University of Toronto , Toronto, ON M5S 3K3,","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5121129414","display_name":"Henry C Y Wong","orcid":null},"institutions":[{"id":"https://openalex.org/I4210131216","display_name":"Princess Margaret Hospital","ror":"https://ror.org/03jrxta72","country_code":"HK","type":"healthcare","lineage":["https://openalex.org/I1294586568","https://openalex.org/I4210131216"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Henry C Y Wong","raw_affiliation_strings":["Department of Oncology, Princess Margaret Hospital , Hong Kong,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Oncology, Princess Margaret Hospital , Hong Kong,","institution_ids":["https://openalex.org/I4210131216"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032388451","display_name":"M. Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I4210103786","display_name":"National University Cancer Institute, Singapore","ror":"https://ror.org/025yypj46","country_code":"SG","type":"education","lineage":["https://openalex.org/I4210103786","https://openalex.org/I4210150261"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Michael S F Lee","raw_affiliation_strings":["Department of Radiation Oncology, National University Cancer Institute, National University Hospital , Singapore,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiation Oncology, National University Cancer Institute, National University Hospital , Singapore,","institution_ids":["https://openalex.org/I4210103786"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103702283","display_name":"Srinivas Raman","orcid":null},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Srinivas Raman","raw_affiliation_strings":["Department of Radiation Oncology, BC Cancer , Vancouver, BC V5Z 4E6,","Division of Radiation Oncology, University of British Columbia , Vancouver, BC V5Z 1M9,"],"raw_orcid":"https://orcid.org/0000-0001-5688-9628","affiliations":[{"raw_affiliation_string":"Department of Radiation Oncology, BC Cancer , Vancouver, BC V5Z 4E6,","institution_ids":["https://openalex.org/I1289530486"]},{"raw_affiliation_string":"Division of Radiation Oncology, University of British Columbia , Vancouver, BC V5Z 1M9,","institution_ids":["https://openalex.org/I141945490"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5121171964"],"corresponding_institution_ids":["https://openalex.org/I185261750","https://openalex.org/I2802654988"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.69153127,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"33","issue":"3","first_page":"724","last_page":"731"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10206","display_name":"Meta-analysis and systematic reviews","score":0.6212999820709229,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T10206","display_name":"Meta-analysis and systematic reviews","score":0.6212999820709229,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12027","display_name":"Social Media in Health Education","score":0.03550000116229057,"subfield":{"id":"https://openalex.org/subfields/3306","display_name":"Health"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.027000000700354576,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/guideline","display_name":"Guideline","score":0.7775999903678894},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.4374000132083893},{"id":"https://openalex.org/keywords/control","display_name":"Control (management)","score":0.3537999987602234},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.3244999945163727},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.31610000133514404}],"concepts":[{"id":"https://openalex.org/C2780182762","wikidata":"https://www.wikidata.org/wiki/Q1630279","display_name":"Guideline","level":2,"score":0.7775999903678894},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5465999841690063},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.4374000132083893},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.38769999146461487},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36959999799728394},{"id":"https://openalex.org/C2775924081","wikidata":"https://www.wikidata.org/wiki/Q55608371","display_name":"Control (management)","level":2,"score":0.3537999987602234},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3260999917984009},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.3244999945163727},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.32339999079704285},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.31610000133514404},{"id":"https://openalex.org/C24756922","wikidata":"https://www.wikidata.org/wiki/Q1757694","display_name":"Data quality","level":3,"score":0.29739999771118164},{"id":"https://openalex.org/C157170001","wikidata":"https://www.wikidata.org/wiki/Q4781507","display_name":"Applications of artificial intelligence","level":2,"score":0.2806999981403351},{"id":"https://openalex.org/C133462117","wikidata":"https://www.wikidata.org/wiki/Q4929239","display_name":"Data collection","level":2,"score":0.27230000495910645}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019983","descriptor_name":"Guideline Adherence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019983","descriptor_name":"Guideline Adherence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D058028","descriptor_name":"Research Report","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D058028","descriptor_name":"Research Report","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/jamia/ocaf223","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocaf223","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:41435508","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41435508","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W1529485074","https://openalex.org/W1964502734","https://openalex.org/W2032541700","https://openalex.org/W2116485318","https://openalex.org/W2166023752","https://openalex.org/W2406493898","https://openalex.org/W2789645607","https://openalex.org/W2947362869","https://openalex.org/W2955273711","https://openalex.org/W3018400464","https://openalex.org/W3045932578","https://openalex.org/W3080884027","https://openalex.org/W3088002975","https://openalex.org/W3092186097","https://openalex.org/W3095902429","https://openalex.org/W3126336915","https://openalex.org/W3133622905","https://openalex.org/W3186610719","https://openalex.org/W3199384863","https://openalex.org/W3215966857","https://openalex.org/W4229368061","https://openalex.org/W4294214983","https://openalex.org/W4367310920","https://openalex.org/W4391292768","https://openalex.org/W4392058364","https://openalex.org/W4393386222","https://openalex.org/W4396977150","https://openalex.org/W4399807068","https://openalex.org/W4402620497","https://openalex.org/W4405736832","https://openalex.org/W4407873728","https://openalex.org/W4408043045","https://openalex.org/W4408685817","https://openalex.org/W4411747972","https://openalex.org/W4413780260"],"related_works":[],"abstract_inverted_index":{"OBJECTIVES:":[0],"To":[1],"develop":[2],"AutoReporter,":[3,42,61],"a":[4,47,62,110],"large":[5],"language":[6,151],"model":[7],"(LLM)":[8],"system":[9],"that":[10],"automates":[11],"evaluation":[12],"of":[13,51,113],"adherence":[14,158],"to":[15],"research":[16,166],"reporting":[17,53,156],"guidelines.":[18],"MATERIALS":[19],"AND":[20],"METHODS:":[21],"Eight":[22],"prompt-engineering":[23],"and":[24,30,100,115,145],"retrieval":[25],"strategies":[26],"coupled":[27,66],"with":[28,67,81,122],"reasoning":[29,70],"general-purpose":[31],"LLMs":[32],"were":[33],"benchmarked":[34],"on":[35,45],"the":[36,68,126],"SPIRIT-CONSORT-TM":[37],"corpus.":[38],"The":[39],"top-performing":[40],"approach,":[41],"was":[43],"validated":[44],"BenchReport,":[46],"novel":[48],"benchmark":[49],"dataset":[50],"expert-rated":[52],"guideline":[54,157],"assessments":[55,159],"from":[56,125],"10":[57],"systematic":[58],"reviews.":[59],"RESULTS:":[60],"zero-shot,":[63],"no-retrieval":[64],"prompt":[65],"o3-mini":[69],"LLM,":[71],"demonstrated":[72],"strong":[73],"accuracy":[74,112],"(CONSORT":[75,83],"90.09%;":[76],"SPIRIT:":[77,97,105],"92.07%),":[78],"substantial":[79,116],"agreement":[80,117],"humans":[82],"Cohen's":[84,89],"\u03ba":[85,90,119],"=":[86,91],"0.70,":[87],"SPIRIT":[88],"0.77),":[92],"runtime":[93],"(CONSORT:":[94,102],"617.26":[95],"s;":[96],"544.51":[98],"s),":[99],"cost":[101],"0.68":[103],"USD;":[104],"0.65":[106],"USD).":[107],"AutoReporter":[108,168],"achieved":[109],"mean":[111],"91.8%":[114],"(Cohen's":[118],">":[120],"0.6)":[121],"expert":[123],"ratings":[124],"BenchReport":[127],"benchmark.":[128],"DISCUSSION:":[129],"Structured":[130],"prompting":[131],"alone":[132],"can":[133,153],"match":[134],"or":[135],"exceed":[136],"fine-tuned":[137],"domain":[138],"models":[139,152],"while":[140],"forgoing":[141],"manually":[142],"annotated":[143],"corpora":[144],"computationally":[146],"intensive":[147],"training.":[148],"CONCLUSION:":[149],"Large":[150],"feasibly":[154],"automate":[155],"for":[160],"scalable":[161],"quality":[162],"control":[163],"in":[164],"scientific":[165],"reporting.":[167],"is":[169],"publicly":[170],"accessible":[171],"at":[172],"https://autoreporter.streamlit.app.":[173]},"counts_by_year":[],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2025-12-24T00:00:00"}
