{"id":"https://openalex.org/W4414035487","doi":"https://doi.org/10.1093/jamia/ocaf144","title":"Navigating the landscape of personalized oncology: overcoming challenges and expanding horizons with computational modeling","display_name":"Navigating the landscape of personalized oncology: overcoming challenges and expanding horizons with computational modeling","publication_year":2025,"publication_date":"2025-08-06","ids":{"openalex":"https://openalex.org/W4414035487","doi":"https://doi.org/10.1093/jamia/ocaf144","pmid":"https://pubmed.ncbi.nlm.nih.gov/40907963"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocaf144","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocaf144","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12758477/","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050488348","display_name":"Melike Sirlanci","orcid":"https://orcid.org/0000-0002-4749-4752"},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Melike Sirlanci","raw_affiliation_strings":["Department of Applied Mathematics, University of Colorado Boulder , Boulder, CO 80309,","Department of Biomedical Informatics, University of Colorado Anschutz Medical Campus , Aurora, CO 80045,","Department of Biomedical Informatics, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, United States","Department of Applied Mathematics, University of Colorado Boulder, Boulder, CO 80309, United States"],"raw_orcid":"https://orcid.org/0000-0002-4749-4752","affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics, University of Colorado Boulder , Boulder, CO 80309,","institution_ids":["https://openalex.org/I188538660"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Colorado Anschutz Medical Campus , Aurora, CO 80045,","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, United States","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Department of Applied Mathematics, University of Colorado Boulder, Boulder, CO 80309, United States","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070746797","display_name":"David J. Albers","orcid":"https://orcid.org/0000-0002-5369-526X"},"institutions":[{"id":"https://openalex.org/I151808059","display_name":"Colorado School of Public Health","ror":"https://ror.org/005x9g035","country_code":"US","type":"education","lineage":["https://openalex.org/I151808059"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Albers","raw_affiliation_strings":["Department of Bioengineering, University of Colorado Denver , Aurora, CO 80045,","Department of Biomedical Informatics, Columbia University , New York, NY 10032,","Department of Biomedical Informatics, University of Colorado Anschutz Medical Campus , Aurora, CO 80045,","Department of Biostatistics & Informatics, Colorado School of Public Health , Aurora, CO 80045,","Department of Biostatistics & Informatics, Colorado School of Public Health, Aurora, CO 80045, United States","Department of Bioengineering, University of Colorado Denver, Aurora, CO 80045, United States","Department of Biomedical Informatics, Columbia University, New York, NY 10032, United States","Department of Biomedical Informatics, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, United States"],"raw_orcid":"https://orcid.org/0000-0002-5369-526X","affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of Colorado Denver , Aurora, CO 80045,","institution_ids":["https://openalex.org/I921990950"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University , New York, NY 10032,","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Colorado Anschutz Medical Campus , Aurora, CO 80045,","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Department of Biostatistics & Informatics, Colorado School of Public Health , Aurora, CO 80045,","institution_ids":["https://openalex.org/I151808059"]},{"raw_affiliation_string":"Department of Biostatistics & Informatics, Colorado School of Public Health, Aurora, CO 80045, United States","institution_ids":["https://openalex.org/I151808059"]},{"raw_affiliation_string":"Department of Bioengineering, University of Colorado Denver, Aurora, CO 80045, United States","institution_ids":["https://openalex.org/I921990950"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University, New York, NY 10032, United States","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, United States","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039549527","display_name":"Jennifer Kwak","orcid":"https://orcid.org/0009-0007-7232-4919"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer Kwak","raw_affiliation_strings":["Department of Radiology, University of Colorado Anschutz Medical Campus , Aurora, CO 80045,","Department of Radiology, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology, University of Colorado Anschutz Medical Campus , Aurora, CO 80045,","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Department of Radiology, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, United States","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087902006","display_name":"Clayton A. Smith","orcid":"https://orcid.org/0000-0001-6478-4244"},"institutions":[{"id":"https://openalex.org/I2802654978","display_name":"The Medical Center of Aurora","ror":"https://ror.org/04qw37741","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2802654978","https://openalex.org/I4210120438"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Clayton Smith","raw_affiliation_strings":["CU Innovations, University of Colorado Anschutz Medical Campus , Aurora, CO 80045,","Division of Hematology, Department of Medicine, University of Colorado Anschutz Medical Campus , Aurora, CO 80045,","OncoVerity , Inc., Aurora, CO 80045,","CU Innovations, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, United States","OncoVerity, Inc., Aurora, CO 80045, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CU Innovations, University of Colorado Anschutz Medical Campus , Aurora, CO 80045,","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Division of Hematology, Department of Medicine, University of Colorado Anschutz Medical Campus , Aurora, CO 80045,","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"OncoVerity , Inc., Aurora, CO 80045,","institution_ids":["https://openalex.org/I2802654978"]},{"raw_affiliation_string":"CU Innovations, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, United States","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"OncoVerity, Inc., Aurora, CO 80045, United States","institution_ids":["https://openalex.org/I2802654978"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075439357","display_name":"Tellen D. Bennett","orcid":"https://orcid.org/0000-0003-1483-4236"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tellen D Bennett","raw_affiliation_strings":["Department of Biomedical Informatics, University of Colorado Anschutz Medical Campus , Aurora, CO 80045,","Department of Pediatrics (Critical Care Medicine), University of Colorado Anschutz Medical Campus , Aurora, CO 80045,","Department of Pediatrics (Critical Care Medicine), University of Colorado Anschutz Medical Campus, Aurora, CO 80045, United States"],"raw_orcid":"https://orcid.org/0000-0003-1483-4236","affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Colorado Anschutz Medical Campus , Aurora, CO 80045,","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Department of Pediatrics (Critical Care Medicine), University of Colorado Anschutz Medical Campus , Aurora, CO 80045,","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Department of Pediatrics (Critical Care Medicine), University of Colorado Anschutz Medical Campus, Aurora, CO 80045, United States","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035030443","display_name":"Steven M. Bair","orcid":"https://orcid.org/0000-0002-0094-0014"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven M Bair","raw_affiliation_strings":["Division of Hematology, Department of Medicine, University of Colorado Anschutz Medical Campus , Aurora, CO 80045,","Division of Hematology, Department of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Hematology, Department of Medicine, University of Colorado Anschutz Medical Campus , Aurora, CO 80045,","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Division of Hematology, Department of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, United States","institution_ids":["https://openalex.org/I51713134"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5050488348"],"corresponding_institution_ids":["https://openalex.org/I188538660","https://openalex.org/I51713134"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":1.0043,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.78742211,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"33","issue":"1","first_page":"242","last_page":"251"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11491","display_name":"CAR-T cell therapy research","score":0.3495999872684479,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11491","display_name":"CAR-T cell therapy research","score":0.3495999872684479,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11235","display_name":"Statistical Methods in Clinical Trials","score":0.0544000007212162,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11829","display_name":"Mathematical Biology Tumor Growth","score":0.04670000076293945,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/new-horizons","display_name":"New horizons","score":0.5601020455360413},{"id":"https://openalex.org/keywords/personalized-medicine","display_name":"Personalized medicine","score":0.458586186170578},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.45509904623031616},{"id":"https://openalex.org/keywords/precision-oncology","display_name":"Precision oncology","score":0.4375383257865906},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4016577899456024},{"id":"https://openalex.org/keywords/medical-physics","display_name":"Medical physics","score":0.36983904242515564},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.36967432498931885},{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.34397393465042114},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.26180392503738403},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1547691822052002},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1389995813369751},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.1272096335887909}],"concepts":[{"id":"https://openalex.org/C2992257854","wikidata":"https://www.wikidata.org/wiki/Q48461","display_name":"New horizons","level":3,"score":0.5601020455360413},{"id":"https://openalex.org/C32220436","wikidata":"https://www.wikidata.org/wiki/Q2072214","display_name":"Personalized medicine","level":2,"score":0.458586186170578},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45509904623031616},{"id":"https://openalex.org/C3020497934","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision oncology","level":3,"score":0.4375383257865906},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4016577899456024},{"id":"https://openalex.org/C19527891","wikidata":"https://www.wikidata.org/wiki/Q1120908","display_name":"Medical physics","level":1,"score":0.36983904242515564},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.36967432498931885},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.34397393465042114},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.26180392503738403},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1547691822052002},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1389995813369751},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.1272096335887909},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0},{"id":"https://openalex.org/C29829512","wikidata":"https://www.wikidata.org/wiki/Q40218","display_name":"Spacecraft","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008223","descriptor_name":"Lymphoma","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D008223","descriptor_name":"Lymphoma","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D008223","descriptor_name":"Lymphoma","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D008223","descriptor_name":"Lymphoma","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D008223","descriptor_name":"Lymphoma","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016219","descriptor_name":"Immunotherapy, Adoptive","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016219","descriptor_name":"Immunotherapy, Adoptive","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016219","descriptor_name":"Immunotherapy, Adoptive","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016219","descriptor_name":"Immunotherapy, Adoptive","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016219","descriptor_name":"Immunotherapy, Adoptive","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/jamia/ocaf144","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocaf144","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:40907963","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40907963","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12758477","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12758477/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:12758477","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12758477/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":76,"referenced_works":["https://openalex.org/W621546036","https://openalex.org/W1480376833","https://openalex.org/W1921511217","https://openalex.org/W2032449612","https://openalex.org/W2039275997","https://openalex.org/W2064208261","https://openalex.org/W2104287359","https://openalex.org/W2105934661","https://openalex.org/W2173690212","https://openalex.org/W2612743911","https://openalex.org/W2744261860","https://openalex.org/W2775546819","https://openalex.org/W2804500674","https://openalex.org/W2807727586","https://openalex.org/W2896190255","https://openalex.org/W2908682713","https://openalex.org/W2915444077","https://openalex.org/W2940487144","https://openalex.org/W2944016032","https://openalex.org/W2957559077","https://openalex.org/W2978281981","https://openalex.org/W2996109087","https://openalex.org/W2999318335","https://openalex.org/W2999928454","https://openalex.org/W3012641931","https://openalex.org/W3013582289","https://openalex.org/W3032210049","https://openalex.org/W3035604179","https://openalex.org/W3040016339","https://openalex.org/W3044609915","https://openalex.org/W3081120827","https://openalex.org/W3084569243","https://openalex.org/W3090872582","https://openalex.org/W3099892132","https://openalex.org/W3104014306","https://openalex.org/W3108334428","https://openalex.org/W3112118241","https://openalex.org/W3120756887","https://openalex.org/W3120801295","https://openalex.org/W3137476328","https://openalex.org/W3138498550","https://openalex.org/W3156422132","https://openalex.org/W3158478398","https://openalex.org/W3160900712","https://openalex.org/W3182899221","https://openalex.org/W4200310129","https://openalex.org/W4221042119","https://openalex.org/W4233734028","https://openalex.org/W4283645969","https://openalex.org/W4285594231","https://openalex.org/W4286544672","https://openalex.org/W4289792878","https://openalex.org/W4295073815","https://openalex.org/W4297787325","https://openalex.org/W4301972650","https://openalex.org/W4306965373","https://openalex.org/W4310852955","https://openalex.org/W4313430651","https://openalex.org/W4317498947","https://openalex.org/W4324129113","https://openalex.org/W4366463408","https://openalex.org/W4376612852","https://openalex.org/W4377234446","https://openalex.org/W4384277099","https://openalex.org/W4384807682","https://openalex.org/W4385410181","https://openalex.org/W4386012791","https://openalex.org/W4387052783","https://openalex.org/W4388793208","https://openalex.org/W4390992113","https://openalex.org/W4392597604","https://openalex.org/W4398197746","https://openalex.org/W4401672566","https://openalex.org/W4403198324","https://openalex.org/W4403782385","https://openalex.org/W4407417101"],"related_works":["https://openalex.org/W2751417344","https://openalex.org/W3082935376","https://openalex.org/W4392240901","https://openalex.org/W4412701603","https://openalex.org/W4399651953","https://openalex.org/W4386960999","https://openalex.org/W2899657781","https://openalex.org/W4322484660","https://openalex.org/W3193951088","https://openalex.org/W4388011470"],"abstract_inverted_index":{"OBJECTIVES:":[0],"We":[1,68],"discuss":[2],"challenges":[3,33],"using":[4,25,109],"computational":[5],"modeling":[6,51,55],"approaches":[7],"for":[8,18,78,92,159],"personalized":[9,80],"prediction":[10],"in":[11,43,59,83,120,127,154,176],"clinical":[12,26],"practice":[13],"to":[14,108,169],"predict":[15],"treatment":[16],"response":[17],"rare":[19,160],"diseases":[20],"treated":[21],"by":[22,105],"novel":[23],"therapies":[24],"oncology":[27],"as":[28,149],"an":[29,70],"example":[30],"context.":[31],"Several":[32],"are":[34,57,119,166],"discussed,":[35],"including":[36],"data":[37,39,150,171],"scarcity,":[38],"sparsity,":[40],"and":[41,53,75,138,152,173],"difficulties":[42],"establishing":[44],"interdisciplinary":[45,185],"teams.":[46,186],"Machine":[47],"learning":[48],"(ML),":[49],"mechanistic":[50],"(MM),":[52],"hybrid":[54],"(HM)":[56],"discussed":[58],"the":[60,84,100,117,133,141],"context":[61,85],"of":[62,86,136],"these":[63,181],"challenges.":[64],"MATERIALS":[65],"AND":[66],"METHODS:":[67],"present":[69],"HM":[71,97,143,164],"approach,":[72],"combining":[73],"ML":[74,137],"MM":[76,110,139],"techniques":[77,165,182],"improved":[79,99],"model":[81],"estimation":[82],"chimeric":[87],"antigen":[88],"receptor":[89],"T-cell":[90],"therapy":[91],"aggressive":[93],"lymphoma.":[94],"RESULTS:":[95],"The":[96,163],"approach":[98],"root":[101],"mean":[102],"squared":[103],"error":[104],"61.27\u00b123.21%":[106],"compared":[107],"alone":[111],"(MM:":[112],"2.36*105\u22131.68*105and":[113],"HM:":[114],"9.57*104\u22138.37*104,":[115],"where":[116],"units":[118],"cells),":[121],"computed":[122],"from":[123],"13":[124],"patients":[125],"included":[126],"this":[128],"study.":[129],"DISCUSSION:":[130],"By":[131],"exploiting":[132],"complementary":[134],"strengths":[135],"approaches,":[140],"developed":[142],"method":[144],"addresses":[145],"common":[146,158],"limitations":[147],"such":[148],"scarcity":[151,172],"sparsity":[153,174],"medical":[155,178],"settings,":[156],"especially":[157],"diseases.":[161],"CONCLUSION:":[162],"likely":[167],"required":[168],"overcome":[170],"issues":[175],"broad":[177],"settings.":[179],"Developing":[180],"requires":[183],"dedicated":[184]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-27T08:26:11.824852","created_date":"2025-10-10T00:00:00"}
