{"id":"https://openalex.org/W4412408927","doi":"https://doi.org/10.1093/jamia/ocaf104","title":"SNOMED CT entity linking challenge","display_name":"SNOMED CT entity linking challenge","publication_year":2025,"publication_date":"2025-07-14","ids":{"openalex":"https://openalex.org/W4412408927","doi":"https://doi.org/10.1093/jamia/ocaf104","pmid":"https://pubmed.ncbi.nlm.nih.gov/40657868"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocaf104","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocaf104","pdf_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocaf104/63747004/ocaf104.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocaf104/63747004/ocaf104.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028375409","display_name":"Rory Davidson","orcid":"https://orcid.org/0000-0001-8768-0288"},"institutions":[{"id":"https://openalex.org/I2799584991","display_name":"London International Development Centre","ror":"https://ror.org/053xt2a19","country_code":"GB","type":"other","lineage":["https://openalex.org/I2799584991"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Rory Davidson","raw_affiliation_strings":["SNOMED International , London W2 6BD,","SNOMED International, London W2 6BD, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0001-8768-0288","affiliations":[{"raw_affiliation_string":"SNOMED International , London W2 6BD,","institution_ids":["https://openalex.org/I2799584991"]},{"raw_affiliation_string":"SNOMED International, London W2 6BD, United Kingdom","institution_ids":["https://openalex.org/I2799584991"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5118981214","display_name":"Will Hardman","orcid":null},"institutions":[{"id":"https://openalex.org/I4210142051","display_name":"WWF-UK","ror":"https://ror.org/052y0z870","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210094122","https://openalex.org/I4210142051"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Will Hardman","raw_affiliation_strings":["Veratai Ltf , Woking GU22 7QW,","Veratai Ltf, Woking GU22 7QW, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Veratai Ltf , Woking GU22 7QW,","institution_ids":["https://openalex.org/I4210142051"]},{"raw_affiliation_string":"Veratai Ltf, Woking GU22 7QW, United Kingdom","institution_ids":["https://openalex.org/I4210142051"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030391846","display_name":"Guy Amit","orcid":"https://orcid.org/0000-0002-4404-0683"},"institutions":[{"id":"https://openalex.org/I2799918907","display_name":"IMI TAMI Institute for Research and Development","ror":"https://ror.org/016en3a39","country_code":"IL","type":"facility","lineage":["https://openalex.org/I2799918907"]},{"id":"https://openalex.org/I2801911631","display_name":"Kishwaukee College","ror":"https://ror.org/0303sda91","country_code":"US","type":"education","lineage":["https://openalex.org/I2801911631"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"Guy Amit","raw_affiliation_strings":["KI Research Institute , Kfar Malal,","KI Research Institute, Kfar Malal, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"KI Research Institute , Kfar Malal,","institution_ids":["https://openalex.org/I2801911631"]},{"raw_affiliation_string":"KI Research Institute, Kfar Malal, Israel","institution_ids":["https://openalex.org/I2799918907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049705385","display_name":"Yonatan Bilu","orcid":"https://orcid.org/0000-0001-9119-7889"},"institutions":[{"id":"https://openalex.org/I2799918907","display_name":"IMI TAMI Institute for Research and Development","ror":"https://ror.org/016en3a39","country_code":"IL","type":"facility","lineage":["https://openalex.org/I2799918907"]},{"id":"https://openalex.org/I2801911631","display_name":"Kishwaukee College","ror":"https://ror.org/0303sda91","country_code":"US","type":"education","lineage":["https://openalex.org/I2801911631"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"Yonatan Bilu","raw_affiliation_strings":["KI Research Institute , Kfar Malal,","KI Research Institute, Kfar Malal, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"KI Research Institute , Kfar Malal,","institution_ids":["https://openalex.org/I2801911631"]},{"raw_affiliation_string":"KI Research Institute, Kfar Malal, Israel","institution_ids":["https://openalex.org/I2799918907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039086542","display_name":"Vincenzo Della Mea","orcid":"https://orcid.org/0000-0002-0144-3802"},"institutions":[{"id":"https://openalex.org/I129043915","display_name":"University of Udine","ror":"https://ror.org/05ht0mh31","country_code":"IT","type":"education","lineage":["https://openalex.org/I129043915"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Vincenzo Della Mea","raw_affiliation_strings":["Department of Mathematics, Computer Science and Physics, University of Udine , Udine 33100,","Department of Mathematics, Computer Science and Physics, University of Udine, Udine 33100, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Computer Science and Physics, University of Udine , Udine 33100,","institution_ids":["https://openalex.org/I129043915"]},{"raw_affiliation_string":"Department of Mathematics, Computer Science and Physics, University of Udine, Udine 33100, Italy","institution_ids":["https://openalex.org/I129043915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5098921355","display_name":"Aleksandr Galaida","orcid":null},"institutions":[{"id":"https://openalex.org/I4210151146","display_name":"Center of Medical Genetics and Primary Health Care","ror":"https://ror.org/04rvwsw45","country_code":"AM","type":"healthcare","lineage":["https://openalex.org/I4210151146"]}],"countries":["AM"],"is_corresponding":false,"raw_author_name":"Aleksandr Galaida","raw_affiliation_strings":["Grid Dynamics , Yerevan 0023, Armenia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Grid Dynamics , Yerevan 0023, Armenia","institution_ids":["https://openalex.org/I4210151146"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044531051","display_name":"Irena Girshovitz","orcid":"https://orcid.org/0000-0002-6397-9055"},"institutions":[{"id":"https://openalex.org/I2799918907","display_name":"IMI TAMI Institute for Research and Development","ror":"https://ror.org/016en3a39","country_code":"IL","type":"facility","lineage":["https://openalex.org/I2799918907"]},{"id":"https://openalex.org/I2801911631","display_name":"Kishwaukee College","ror":"https://ror.org/0303sda91","country_code":"US","type":"education","lineage":["https://openalex.org/I2801911631"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"Irena Girshovitz","raw_affiliation_strings":["KI Research Institute , Kfar Malal,","KI Research Institute, Kfar Malal, Israel"],"raw_orcid":"https://orcid.org/0000-0002-6397-9055","affiliations":[{"raw_affiliation_string":"KI Research Institute , Kfar Malal,","institution_ids":["https://openalex.org/I2801911631"]},{"raw_affiliation_string":"KI Research Institute, Kfar Malal, Israel","institution_ids":["https://openalex.org/I2799918907"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Mikhail Kulyabin","orcid":"https://orcid.org/0009-0007-0440-030X"},"institutions":[{"id":"https://openalex.org/I4210143610","display_name":"Visio","ror":"https://ror.org/043nwx769","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210143610"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Mikhail Kulyabin","raw_affiliation_strings":["VisioMed.AI , Moscow 125212, Russia"],"raw_orcid":"https://orcid.org/0009-0007-0440-030X","affiliations":[{"raw_affiliation_string":"VisioMed.AI , Moscow 125212, Russia","institution_ids":["https://openalex.org/I4210143610"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024618861","display_name":"Mihai Horia Popescu","orcid":"https://orcid.org/0000-0003-3378-0368"},"institutions":[{"id":"https://openalex.org/I129043915","display_name":"University of Udine","ror":"https://ror.org/05ht0mh31","country_code":"IT","type":"education","lineage":["https://openalex.org/I129043915"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Mihai Horia Popescu","raw_affiliation_strings":["Department of Mathematics, Computer Science and Physics, University of Udine , Udine 33100,","Department of Mathematics, Computer Science and Physics, University of Udine, Udine 33100, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Computer Science and Physics, University of Udine , Udine 33100,","institution_ids":["https://openalex.org/I129043915"]},{"raw_affiliation_string":"Department of Mathematics, Computer Science and Physics, University of Udine, Udine 33100, Italy","institution_ids":["https://openalex.org/I129043915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050287516","display_name":"Kevin Roitero","orcid":"https://orcid.org/0000-0002-9191-3280"},"institutions":[{"id":"https://openalex.org/I129043915","display_name":"University of Udine","ror":"https://ror.org/05ht0mh31","country_code":"IT","type":"education","lineage":["https://openalex.org/I129043915"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Kevin Roitero","raw_affiliation_strings":["Department of Mathematics, Computer Science and Physics, University of Udine , Udine 33100,","Department of Mathematics, Computer Science and Physics, University of Udine, Udine 33100, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Computer Science and Physics, University of Udine , Udine 33100,","institution_ids":["https://openalex.org/I129043915"]},{"raw_affiliation_string":"Department of Mathematics, Computer Science and Physics, University of Udine, Udine 33100, Italy","institution_ids":["https://openalex.org/I129043915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108988435","display_name":"Gleb Sokolov","orcid":null},"institutions":[{"id":"https://openalex.org/I4210143610","display_name":"Visio","ror":"https://ror.org/043nwx769","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210143610"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Gleb Sokolov","raw_affiliation_strings":["VisioMed.AI , Moscow 125212, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"VisioMed.AI , Moscow 125212, Russia","institution_ids":["https://openalex.org/I4210143610"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022114369","display_name":"Chen Yanover","orcid":"https://orcid.org/0000-0003-3663-4286"},"institutions":[{"id":"https://openalex.org/I2799918907","display_name":"IMI TAMI Institute for Research and Development","ror":"https://ror.org/016en3a39","country_code":"IL","type":"facility","lineage":["https://openalex.org/I2799918907"]},{"id":"https://openalex.org/I2801911631","display_name":"Kishwaukee College","ror":"https://ror.org/0303sda91","country_code":"US","type":"education","lineage":["https://openalex.org/I2801911631"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"Chen Yanover","raw_affiliation_strings":["KI Research Institute , Kfar Malal,","KI Research Institute, Kfar Malal, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"KI Research Institute , Kfar Malal,","institution_ids":["https://openalex.org/I2801911631"]},{"raw_affiliation_string":"KI Research Institute, Kfar Malal, Israel","institution_ids":["https://openalex.org/I2799918907"]}]}],"institutions":[],"countries_distinct_count":6,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":{"value":3967,"currency":"USD","value_usd":3967},"fwci":9.772,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.97831473,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"32","issue":"9","first_page":"1397","last_page":"1406"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.5940999984741211,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.5940999984741211,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.09300000220537186,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.04969999939203262,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/snomed-ct","display_name":"SNOMED CT","score":0.8981689214706421},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7666935920715332},{"id":"https://openalex.org/keywords/ambiguity","display_name":"Ambiguity","score":0.6642500162124634},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5916033983230591},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.524623692035675},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5229811668395996},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4335755407810211},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4271343946456909},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.41869622468948364},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.41116583347320557}],"concepts":[{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.8981689214706421},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7666935920715332},{"id":"https://openalex.org/C2780522230","wikidata":"https://www.wikidata.org/wiki/Q1140419","display_name":"Ambiguity","level":2,"score":0.6642500162124634},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5916033983230591},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.524623692035675},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5229811668395996},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4335755407810211},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4271343946456909},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.41869622468948364},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.41116583347320557},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/jamia/ocaf104","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocaf104","pdf_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocaf104/63747004/ocaf104.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:40657868","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40657868","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:air.uniud.it:11390/1312485","is_oa":true,"landing_page_url":"https://hdl.handle.net/11390/1312485","pdf_url":"https://air.uniud.it/bitstream/11390/1312485/1/SNOMED%20CT%20entity%20linking%20challenge.pdf","source":{"id":"https://openalex.org/S4306401163","display_name":"Institutional Research Information System (University of Udine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I129043915","host_organization_name":"University of Udine","host_organization_lineage":["https://openalex.org/I129043915"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12361850","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12361850","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/jamia/ocaf104","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocaf104","pdf_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocaf104/63747004/ocaf104.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4399999976158142,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4412408927.pdf","grobid_xml":"https://content.openalex.org/works/W4412408927.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W2169099542","https://openalex.org/W2962862931","https://openalex.org/W2970738924","https://openalex.org/W3158665049","https://openalex.org/W4307138871","https://openalex.org/W4389421203","https://openalex.org/W6737947904","https://openalex.org/W6859548168","https://openalex.org/W6884907361","https://openalex.org/W6941189330","https://openalex.org/W6959779407"],"related_works":["https://openalex.org/W2039735462","https://openalex.org/W4297803142","https://openalex.org/W2951665393","https://openalex.org/W2770499767","https://openalex.org/W2295806952","https://openalex.org/W2293521960","https://openalex.org/W4407837198","https://openalex.org/W2405923535","https://openalex.org/W1511848092","https://openalex.org/W1708042184"],"abstract_inverted_index":{"OBJECTIVE:":[0],"This":[1],"paper":[2],"presents":[3],"the":[4,24,59,65,69],"results":[5],"from":[6,129],"a":[7,17,32,37,75,85,92],"competition":[8],"challenging":[9],"participants":[10],"to":[11,148],"develop":[12],"entity":[13,140],"linking":[14,141],"models":[15],"using":[16,58],"subset":[18],"of":[19,40],"annotated":[20],"MIMIC-IV-Note":[21],"data":[22,104],"and":[23,91,118,145],"SNOMED":[25],"CT":[26],"Terminology.":[27],"MATERIALS":[28],"AND":[29],"METHODS:":[30],"As":[31],"basis":[33],"for":[34,142],"this":[35,130],"work,":[36],"large":[38],"set":[39],"74":[41],"808":[42],"annotations":[43],"was":[44],"curated":[45],"across":[46],"272":[47],"discharge":[48],"notes":[49],"spanning":[50],"6624":[51],"unique":[52],"clinical":[53],"concepts.":[54],"Submissions":[55],"were":[56,121],"evaluated":[57,63],"mean":[60],"Intersection-over-Union":[61],"metric,":[62],"at":[64],"character":[66],"level":[67],"with":[68,109,124],"3":[70],"best":[71],"performing":[72],"solutions":[73,81],"awarded":[74],"cash":[76],"prize.":[77],"RESULTS:":[78],"The":[79],"winning":[80],"employed":[82],"contrasting":[83],"approaches:":[84],"dictionary-based":[86],"method,":[87,90],"an":[88],"encoder-based":[89],"decoder-based":[93],"method.":[94],"DISCUSSION:":[95],"Our":[96],"analysis":[97],"reveals":[98],"that":[99,133],"concept":[100,116],"frequency":[101],"in":[102],"training":[103,154],"significantly":[105],"impacts":[106],"model":[107],"performance,":[108],"rare":[110,143],"concepts":[111,144],"proving":[112],"particularly":[113],"challenging.":[114],"High":[115],"entropy":[117],"annotation":[119],"ambiguity":[120],"also":[122],"associated":[123],"decreased":[125],"performance.":[126],"CONCLUSION:":[127],"Findings":[128],"work":[131],"suggest":[132],"future":[134],"projects":[135],"should":[136],"focus":[137],"on":[138],"improving":[139],"developing":[146],"methods":[147],"better":[149],"leverage":[150],"contextual":[151],"information":[152],"when":[153],"examples":[155],"are":[156],"scarce.":[157]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":2}],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2025-10-10T00:00:00"}
