{"id":"https://openalex.org/W4411735388","doi":"https://doi.org/10.1093/jamia/ocaf102","title":"Identifying family structures from obituaries and matching them to patients in an electronic heath record","display_name":"Identifying family structures from obituaries and matching them to patients in an electronic heath record","publication_year":2025,"publication_date":"2025-06-06","ids":{"openalex":"https://openalex.org/W4411735388","doi":"https://doi.org/10.1093/jamia/ocaf102","pmid":"https://pubmed.ncbi.nlm.nih.gov/40576211"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocaf102","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocaf102","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053486176","display_name":"John Mayer","orcid":"https://orcid.org/0000-0002-6862-1052"},"institutions":[{"id":"https://openalex.org/I1315135799","display_name":"Marshfield Clinic","ror":"https://ror.org/025chrz76","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1315135799"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Mayer","raw_affiliation_strings":["Office of Research Computing and Analytics, Marshfield Clinic Research Institute , Marshfield, WI 54449,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Office of Research Computing and Analytics, Marshfield Clinic Research Institute , Marshfield, WI 54449,","institution_ids":["https://openalex.org/I1315135799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009252771","display_name":"Brooke Delgoffe","orcid":null},"institutions":[{"id":"https://openalex.org/I1315135799","display_name":"Marshfield Clinic","ror":"https://ror.org/025chrz76","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1315135799"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brooke Delgoffe","raw_affiliation_strings":["Office of Research Computing and Analytics, Marshfield Clinic Research Institute , Marshfield, WI 54449,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Office of Research Computing and Analytics, Marshfield Clinic Research Institute , Marshfield, WI 54449,","institution_ids":["https://openalex.org/I1315135799"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060959179","display_name":"Scott J. Hebbring","orcid":"https://orcid.org/0000-0003-2369-153X"},"institutions":[{"id":"https://openalex.org/I4210138321","display_name":"Marshfield Clinic","ror":"https://ror.org/03zxy2q77","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210138321"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Scott Hebbring","raw_affiliation_strings":["Center for Precision Medicine Research, Marshfield Clinic Research Institute , Marshfield, WI 54449,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Precision Medicine Research, Marshfield Clinic Research Institute , Marshfield, WI 54449,","institution_ids":["https://openalex.org/I4210138321"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5060959179"],"corresponding_institution_ids":["https://openalex.org/I4210138321"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.15783213,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"32","issue":"9","first_page":"1407","last_page":"1414"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.6035000085830688,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.6035000085830688,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.09269999712705612,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.05139999836683273,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pedigree-chart","display_name":"Pedigree chart","score":0.9571816921234131},{"id":"https://openalex.org/keywords/biobank","display_name":"Biobank","score":0.744361162185669},{"id":"https://openalex.org/keywords/family-tree","display_name":"Family tree","score":0.6160438060760498},{"id":"https://openalex.org/keywords/heritability","display_name":"Heritability","score":0.5926398634910583},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5626193881034851},{"id":"https://openalex.org/keywords/genealogy","display_name":"Genealogy","score":0.5303547978401184},{"id":"https://openalex.org/keywords/data-extraction","display_name":"Data extraction","score":0.5009214878082275},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.37082019448280334},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3528245687484741},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.315621018409729},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.30357736349105835},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2221403419971466},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21518352627754211},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2079916000366211},{"id":"https://openalex.org/keywords/history","display_name":"History","score":0.17754626274108887}],"concepts":[{"id":"https://openalex.org/C22593422","wikidata":"https://www.wikidata.org/wiki/Q3242583","display_name":"Pedigree chart","level":3,"score":0.9571816921234131},{"id":"https://openalex.org/C116567970","wikidata":"https://www.wikidata.org/wiki/Q864217","display_name":"Biobank","level":2,"score":0.744361162185669},{"id":"https://openalex.org/C80429922","wikidata":"https://www.wikidata.org/wiki/Q189977","display_name":"Family tree","level":2,"score":0.6160438060760498},{"id":"https://openalex.org/C161890455","wikidata":"https://www.wikidata.org/wiki/Q1503548","display_name":"Heritability","level":2,"score":0.5926398634910583},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5626193881034851},{"id":"https://openalex.org/C53553401","wikidata":"https://www.wikidata.org/wiki/Q47307","display_name":"Genealogy","level":1,"score":0.5303547978401184},{"id":"https://openalex.org/C2777466982","wikidata":"https://www.wikidata.org/wiki/Q5227287","display_name":"Data extraction","level":3,"score":0.5009214878082275},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.37082019448280334},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3528245687484741},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.315621018409729},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.30357736349105835},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2221403419971466},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21518352627754211},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2079916000366211},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.17754626274108887},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000092822","descriptor_name":"Family Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000092822","descriptor_name":"Family Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000092822","descriptor_name":"Family Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005190","descriptor_name":"Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005190","descriptor_name":"Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005190","descriptor_name":"Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014922","descriptor_name":"Wisconsin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014922","descriptor_name":"Wisconsin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014922","descriptor_name":"Wisconsin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/jamia/ocaf102","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocaf102","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:40576211","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40576211","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","score":0.4399999976158142,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1855058198","https://openalex.org/W2056650104","https://openalex.org/W2128020792","https://openalex.org/W2145964812","https://openalex.org/W2149992227","https://openalex.org/W2754881127","https://openalex.org/W2803405387","https://openalex.org/W3135857378","https://openalex.org/W3165206372","https://openalex.org/W3191244417","https://openalex.org/W4282541895","https://openalex.org/W4367043745","https://openalex.org/W4399317342","https://openalex.org/W6645074340","https://openalex.org/W6651122442","https://openalex.org/W6852730466","https://openalex.org/W6869336453"],"related_works":["https://openalex.org/W4285087457","https://openalex.org/W3113746618","https://openalex.org/W4226051228","https://openalex.org/W3017691140","https://openalex.org/W4384208482","https://openalex.org/W4244742767","https://openalex.org/W2470939431","https://openalex.org/W2024651825","https://openalex.org/W3022244529","https://openalex.org/W2069783263"],"abstract_inverted_index":{"OBJECTIVES:":[0],"Family":[1],"data":[2,6,26,39,78,116,210],"are":[3,53],"a":[4,87,92,212],"valuable":[5],"source":[7,75],"in":[8,34,139,152,165,177,201,211,234],"bioinformatic":[9,241],"research.":[10,203,242],"This":[11],"is":[12,27,247],"because":[13],"family":[14,25,77,143,161],"members":[15,144,162],"often":[16],"share":[17],"common":[18],"genetic":[19,202],"and":[20,69,160],"environmental":[21],"exposures.":[22],"Collecting":[23],"this":[24],"traditionally":[28],"very":[29],"labor":[30],"intensive":[31],"but":[32],"advances":[33],"electronic":[35],"health":[36,50,71],"record":[37],"(EHR)":[38],"mining":[40],"has":[41],"proven":[42],"useful":[43],"when":[44],"identifying":[45],"pedigrees":[46],"linked":[47],"to":[48,59,104,130,163],"longitudinal":[49],"histories.":[51,72],"These":[52],"called":[54],"e-pedigrees.":[55],"Unfortunately,":[56],"e-pedigrees":[57],"tend":[58],"miss":[60],"the":[61,67,105,122,153,166,231],"oldest":[62,232],"patients":[63,164,173],"who":[64],"inherently":[65],"have":[66,86,109],"longest":[68],"richest":[70],"A":[73],"good":[74,93],"of":[76,155,186,190,216,225],"from":[79,117,147],"older":[80],"generations":[81],"includes":[82],"obituaries,":[83,118],"as":[84],"they":[85],"formulaic":[88],"nature":[89],"making":[90],"them":[91],"candidate":[94],"for":[95,121,240],"natural":[96],"language":[97,135],"processing":[98,136],"(NLP)":[99],"that":[100,126,128,174],"can":[101,236],"extract":[102],"relationships":[103,218],"decedent.":[106],"While":[107],"there":[108],"been":[110],"several":[111],"studies":[112],"on":[113,249],"obtaining":[114],"such":[115],"we":[119,168],"demonstrate":[120,228],"first":[123],"time":[124],"approaches":[125],"tie":[127],"information":[129],"an":[131],"EHR.":[132],"METHODS:":[133],"Natural":[134],"extraction":[137],"resulted":[138],"8":[140],"166":[141],"534":[142],"being":[145],"abstracted":[146],"567":[148],"279":[149],"obituaries":[150,229],"published":[151],"state":[154],"Wisconsin.":[156],"After":[157],"matching":[158],"decedent":[159],"EHR,":[167],"identified":[169],"200":[170],"033":[171],"unique":[172],"were":[175,219],"put":[176],"53":[178],"640":[179],"pedigrees.":[180],"RESULTS:":[181],"The":[182,204,223],"largest":[183],"pedigree":[184],"consisted":[185],"21":[187],"individuals.":[188],"Heritability":[189],"adult":[191],"height":[192],"was":[193],"quantified":[194],"(H2=0.51\u00b10.04,":[195],"P<1.00e-07)":[196],"demonstrating":[197],"these":[198,226],"data's":[199],"use":[200],"heritability":[205],"data,":[206],"coupled":[207],"with":[208,230],"overlapping":[209],"biobank,":[213],"suggested":[214],"80%-90%":[215],"familial":[217],"accurately":[220],"defined.":[221],"CONCLUSION:":[222],"totality":[224],"findings":[227],"people":[233],"society":[235],"be":[237],"highly":[238],"informative":[239],"AVAILABILITY":[243],"AND":[244],"IMPLEMENTATION:":[245],"Code":[246],"available":[248],"GitHub":[250],"at":[251],"https://github.com/jgmayer672/ObituaryNLP.":[252]},"counts_by_year":[],"updated_date":"2026-06-23T13:55:30.953635","created_date":"2025-10-10T00:00:00"}
