{"id":"https://openalex.org/W4410977016","doi":"https://doi.org/10.1093/jamia/ocaf084","title":"Dynamic few-shot prompting for clinical note section classification using lightweight, open-source large language models","display_name":"Dynamic few-shot prompting for clinical note section classification using lightweight, open-source large language models","publication_year":2025,"publication_date":"2025-06-03","ids":{"openalex":"https://openalex.org/W4410977016","doi":"https://doi.org/10.1093/jamia/ocaf084","pmid":"https://pubmed.ncbi.nlm.nih.gov/40460022"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocaf084","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocaf084","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110049408","display_name":"Kurt Miller","orcid":null},"institutions":[{"id":"https://openalex.org/I4210120349","display_name":"University of Minnesota Rochester","ror":"https://ror.org/02rh4fw73","country_code":"US","type":"education","lineage":["https://openalex.org/I4210120349"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kurt Miller","raw_affiliation_strings":["Bioinformatics and Computational Biology Program, University of Minnesota , Rochester, MN,","Center for Digital Health, Mayo Clinic , Rochester, MN,","Bioinformatics and Computational Biology Program, University of Minnesota, Rochester, MN, United States","Center for Digital Health, Mayo Clinic, Rochester, MN, United States"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Computational Biology Program, University of Minnesota , Rochester, MN,","institution_ids":["https://openalex.org/I4210120349"]},{"raw_affiliation_string":"Center for Digital Health, Mayo Clinic , Rochester, MN,","institution_ids":["https://openalex.org/I1330342723"]},{"raw_affiliation_string":"Bioinformatics and Computational Biology Program, University of Minnesota, Rochester, MN, United States","institution_ids":["https://openalex.org/I4210120349"]},{"raw_affiliation_string":"Center for Digital Health, Mayo Clinic, Rochester, MN, United States","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044068445","display_name":"Steven Bedrick","orcid":"https://orcid.org/0000-0002-0163-9397"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven Bedrick","raw_affiliation_strings":["Department of Medical Informatics & Clinical Epidemiology, Oregon Health and Science University , Portland, OR,","Department of Medical Informatics & Clinical Epidemiology, Oregon Health and Science University, Portland, OR, United States"],"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics & Clinical Epidemiology, Oregon Health and Science University , Portland, OR,","institution_ids":["https://openalex.org/I165690674"]},{"raw_affiliation_string":"Department of Medical Informatics & Clinical Epidemiology, Oregon Health and Science University, Portland, OR, United States","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109768822","display_name":"Qiuhao Lu","orcid":"https://orcid.org/0000-0003-2368-8410"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qiuhao Lu","raw_affiliation_strings":["McWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston , Houston, TX,","McWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, TX, United States"],"affiliations":[{"raw_affiliation_string":"McWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston , Houston, TX,","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"McWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, TX, United States","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003128469","display_name":"Andrew Wen","orcid":"https://orcid.org/0000-0001-9090-8028"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Wen","raw_affiliation_strings":["McWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston , Houston, TX,","McWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, TX, United States"],"affiliations":[{"raw_affiliation_string":"McWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston , Houston, TX,","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"McWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, TX, United States","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001422310","display_name":"William Hersh","orcid":"https://orcid.org/0000-0002-4114-5148"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William Hersh","raw_affiliation_strings":["Department of Medical Informatics & Clinical Epidemiology, Oregon Health and Science University , Portland, OR,","Department of Medical Informatics & Clinical Epidemiology, Oregon Health and Science University, Portland, OR, United States"],"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics & Clinical Epidemiology, Oregon Health and Science University , Portland, OR,","institution_ids":["https://openalex.org/I165690674"]},{"raw_affiliation_string":"Department of Medical Informatics & Clinical Epidemiology, Oregon Health and Science University, Portland, OR, United States","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103000048","display_name":"Kirk Roberts","orcid":"https://orcid.org/0000-0003-0716-3630"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kirk Roberts","raw_affiliation_strings":["McWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston , Houston, TX,","McWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, TX, United States"],"affiliations":[{"raw_affiliation_string":"McWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston , Houston, TX,","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"McWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, TX, United States","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101585391","display_name":"Hongfang Liu","orcid":"https://orcid.org/0000-0003-2570-3741"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongfang Liu","raw_affiliation_strings":["McWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston , Houston, TX,","McWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, TX, United States"],"affiliations":[{"raw_affiliation_string":"McWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston , Houston, TX,","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"McWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, TX, United States","institution_ids":["https://openalex.org/I919571938"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5110049408"],"corresponding_institution_ids":["https://openalex.org/I1330342723","https://openalex.org/I4210120349"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":5.7199,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.95525918,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"32","issue":"7","first_page":"1164","last_page":"1173"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9718000292778015,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/section","display_name":"Section (typography)","score":0.8143500089645386},{"id":"https://openalex.org/keywords/shot","display_name":"Shot (pellet)","score":0.7491710782051086},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6852309703826904},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.5322245359420776},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5064693689346313},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4851275384426117},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.18193575739860535},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.09859713912010193},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.07411056756973267}],"concepts":[{"id":"https://openalex.org/C2780129039","wikidata":"https://www.wikidata.org/wiki/Q1931107","display_name":"Section (typography)","level":2,"score":0.8143500089645386},{"id":"https://openalex.org/C2778344882","wikidata":"https://www.wikidata.org/wiki/Q278938","display_name":"Shot (pellet)","level":2,"score":0.7491710782051086},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6852309703826904},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.5322245359420776},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5064693689346313},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4851275384426117},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.18193575739860535},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.09859713912010193},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.07411056756973267},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/jamia/ocaf084","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocaf084","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:40460022","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40460022","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6568267561","display_name":null,"funder_award_id":"R01LM011934","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1971954596","https://openalex.org/W2069726734","https://openalex.org/W2128279348","https://openalex.org/W2152845372","https://openalex.org/W2172481346","https://openalex.org/W2190421341","https://openalex.org/W2565495132","https://openalex.org/W2770445088","https://openalex.org/W2958747773","https://openalex.org/W3013721505","https://openalex.org/W3172260675","https://openalex.org/W3185341429","https://openalex.org/W3186100284","https://openalex.org/W3209293071","https://openalex.org/W3215186939","https://openalex.org/W4226470220","https://openalex.org/W4297372959","https://openalex.org/W4384071683","https://openalex.org/W4384561707","https://openalex.org/W4385163750","https://openalex.org/W4385757404","https://openalex.org/W4386855366","https://openalex.org/W4390745503","https://openalex.org/W4390889397","https://openalex.org/W4392193048","https://openalex.org/W4393392423","https://openalex.org/W4394579747","https://openalex.org/W4395067526","https://openalex.org/W4396673725","https://openalex.org/W4399326970","https://openalex.org/W6605982339","https://openalex.org/W6731456550","https://openalex.org/W6810431634","https://openalex.org/W6860321305"],"related_works":["https://openalex.org/W2074502265","https://openalex.org/W4214877189","https://openalex.org/W2560853036","https://openalex.org/W2773965352","https://openalex.org/W2381179799","https://openalex.org/W2566696415","https://openalex.org/W2980279061","https://openalex.org/W2334685461","https://openalex.org/W1563787543","https://openalex.org/W3204019825"],"abstract_inverted_index":{"Our":[0],"results":[1],"showcase":[2],"substantial":[3],"performance":[4],"improvements":[5],"imparted":[6],"by":[7,18],"dynamically":[8],"selecting":[9],"examples":[10],"for":[11,25],"few-shot":[12],"LLM":[13],"prompting,":[14],"and":[15],"further":[16],"improvement":[17],"including":[19],"section":[20],"context,":[21],"demonstrating":[22],"compelling":[23],"potential":[24],"clinical":[26],"applications.":[27]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
