{"id":"https://openalex.org/W4410139466","doi":"https://doi.org/10.1093/jamia/ocaf064","title":"CDEMapper: enhancing National Institutes of Health common data element use with large language models","display_name":"CDEMapper: enhancing National Institutes of Health common data element use with large language models","publication_year":2025,"publication_date":"2025-04-15","ids":{"openalex":"https://openalex.org/W4410139466","doi":"https://doi.org/10.1093/jamia/ocaf064","pmid":"https://pubmed.ncbi.nlm.nih.gov/40332956"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocaf064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocaf064","pdf_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocaf064/63100954/ocaf064.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocaf064/63100954/ocaf064.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012494488","display_name":"Yan Wang","orcid":"https://orcid.org/0000-0003-1036-9365"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yan Wang","raw_affiliation_strings":["Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,"],"raw_orcid":"https://orcid.org/0000-0003-1036-9365","affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018254776","display_name":"Jimin Huang","orcid":"https://orcid.org/0000-0002-3501-3907"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jimin Huang","raw_affiliation_strings":["Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100686802","display_name":"Huan He","orcid":"https://orcid.org/0000-0002-6032-3392"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Huan He","raw_affiliation_strings":["Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082141622","display_name":"Vincent Zhang","orcid":"https://orcid.org/0009-0002-3931-7374"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vincent Zhang","raw_affiliation_strings":["Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101509576","display_name":"Yujia Zhou","orcid":"https://orcid.org/0000-0002-3716-7854"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yujia Zhou","raw_affiliation_strings":["Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018015940","display_name":"Xubing Hao","orcid":"https://orcid.org/0000-0003-2207-4097"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xubing Hao","raw_affiliation_strings":["McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston , Houston, TX 77030,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston , Houston, TX 77030,","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017945541","display_name":"Pritham Ram","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pritham Ram","raw_affiliation_strings":["Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009941118","display_name":"Lingfei Qian","orcid":"https://orcid.org/0000-0001-6406-7069"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lingfei Qian","raw_affiliation_strings":["Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101868563","display_name":"Qianqian Xie","orcid":"https://orcid.org/0000-0002-9588-7454"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qianqian Xie","raw_affiliation_strings":["Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061284344","display_name":"Ruey-Ling Weng","orcid":"https://orcid.org/0009-0005-4003-7339"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ruey-Ling Weng","raw_affiliation_strings":["Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108902830","display_name":"Fongci Lin","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fongci Lin","raw_affiliation_strings":["Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100715220","display_name":"Yan Hu","orcid":"https://orcid.org/0009-0008-2413-5918"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yan Hu","raw_affiliation_strings":["McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston , Houston, TX 77030,"],"raw_orcid":"https://orcid.org/0009-0008-2413-5918","affiliations":[{"raw_affiliation_string":"McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston , Houston, TX 77030,","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049834185","display_name":"Licong Cui","orcid":"https://orcid.org/0000-0001-5549-8780"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Licong Cui","raw_affiliation_strings":["McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston , Houston, TX 77030,"],"raw_orcid":"https://orcid.org/0000-0001-5549-8780","affiliations":[{"raw_affiliation_string":"McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston , Houston, TX 77030,","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055458864","display_name":"Xiaoqian Jiang","orcid":"https://orcid.org/0000-0001-9933-2205"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaoqian Jiang","raw_affiliation_strings":["McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston , Houston, TX 77030,"],"raw_orcid":"https://orcid.org/0000-0001-9933-2205","affiliations":[{"raw_affiliation_string":"McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston , Houston, TX 77030,","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084072550","display_name":"Hua Xu","orcid":"https://orcid.org/0000-0002-5274-4672"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hua Xu","raw_affiliation_strings":["Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,"],"raw_orcid":"https://orcid.org/0000-0002-5274-4672","affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041242363","display_name":"Na Hong","orcid":"https://orcid.org/0000-0001-6798-1761"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Na Hong","raw_affiliation_strings":["Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510,","institution_ids":["https://openalex.org/I32971472"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":16,"corresponding_author_ids":["https://openalex.org/A5012494488"],"corresponding_institution_ids":["https://openalex.org/I32971472"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":{"value":3967,"currency":"USD","value_usd":3967},"fwci":7.6646,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.96723233,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"32","issue":"7","first_page":"1130","last_page":"1139"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.5030999779701233,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.5030999779701233,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.21789999306201935,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.0746999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.7292315363883972},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.711523711681366},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.606650710105896},{"id":"https://openalex.org/keywords/bridge","display_name":"Bridge (graph theory)","score":0.41247469186782837},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3770029544830322},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34084829688072205},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.32957229018211365},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.29844462871551514},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.14910608530044556},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.12897196412086487}],"concepts":[{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.7292315363883972},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.711523711681366},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.606650710105896},{"id":"https://openalex.org/C100776233","wikidata":"https://www.wikidata.org/wiki/Q2532492","display_name":"Bridge (graph theory)","level":2,"score":0.41247469186782837},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3770029544830322},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34084829688072205},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.32957229018211365},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.29844462871551514},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.14910608530044556},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.12897196412086487},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009316","descriptor_name":"National Institutes of Health (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009316","descriptor_name":"National Institutes of Health (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009316","descriptor_name":"National Institutes of Health (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009316","descriptor_name":"National Institutes of Health (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009316","descriptor_name":"National Institutes of Health (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D065709","descriptor_name":"Common Data Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D065709","descriptor_name":"Common Data Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D065709","descriptor_name":"Common Data Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D065709","descriptor_name":"Common Data Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D065709","descriptor_name":"Common Data Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/jamia/ocaf064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocaf064","pdf_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocaf064/63100954/ocaf064.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:40332956","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40332956","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:digitalcommons.library.tmc.edu:uthshis_docs-1645","is_oa":false,"landing_page_url":"https://digitalcommons.library.tmc.edu/uthshis_docs/658","pdf_url":null,"source":{"id":"https://openalex.org/S4377196655","display_name":"Digital Commons-TMC (Texas Medical Center)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1337852284","host_organization_name":"Texas Medical Center","host_organization_lineage":["https://openalex.org/I1337852284"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty, Staff and Student Publications","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12202029","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12202029","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/jamia/ocaf064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocaf064","pdf_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocaf064/63100954/ocaf064.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2221527151","display_name":null,"funder_award_id":"U24LM013755","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G3210772499","display_name":null,"funder_award_id":"U24LM013755","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4410139466.pdf","grobid_xml":"https://content.openalex.org/works/W4410139466.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1693122999","https://openalex.org/W2107647580","https://openalex.org/W2124785215","https://openalex.org/W2232998319","https://openalex.org/W2302501749","https://openalex.org/W2808426020","https://openalex.org/W2883797720","https://openalex.org/W2918196420","https://openalex.org/W2948681370","https://openalex.org/W3024563432","https://openalex.org/W3028277500","https://openalex.org/W3097870063","https://openalex.org/W3097986273","https://openalex.org/W4214921330","https://openalex.org/W4221092052","https://openalex.org/W4289443211","https://openalex.org/W4379376339","https://openalex.org/W4386046368","https://openalex.org/W4394961549","https://openalex.org/W4396769083","https://openalex.org/W4399280731"],"related_works":["https://openalex.org/W2093262417","https://openalex.org/W4312626803","https://openalex.org/W2429057255","https://openalex.org/W2187546663","https://openalex.org/W148745890","https://openalex.org/W4389670110","https://openalex.org/W2611942503","https://openalex.org/W4315621326","https://openalex.org/W2899790217","https://openalex.org/W2598865957"],"abstract_inverted_index":{"OBJECTIVE:":[0],"Common":[1],"Data":[2],"Elements":[3],"(CDEs)":[4],"standardize":[5],"data":[6,13,32,49,75,133,225,241],"collection":[7],"and":[8,15,29,51,88,94,116,120,126,135,144,149,158,165,184,200,243],"sharing":[9],"across":[10],"studies,":[11],"enhancing":[12],"interoperability":[14],"improving":[16],"research":[17],"reproducibility.":[18],"However,":[19],"implementing":[20],"CDEs":[21,91,115,245],"presents":[22],"challenges":[23],"due":[24],"to":[25,37,43,70,77,96,112,217],"the":[26,45,128,140,178,189,198,212,237],"broad":[27],"range":[28],"variety":[30],"of":[31,54,202,214],"elements.":[33],"This":[34,208],"study":[35],"aims":[36],"develop":[38],"a":[39,62,154,170,185],"CDE":[40,86,101,220,248],"mapping":[41,67,73,167,221],"tool":[42,68,104],"bridge":[44],"gap":[46],"between":[47,239],"local":[48,74,224],"elements":[50,76,134,226,242],"National":[52],"Institutes":[53],"Health":[55],"(NIH)":[56],"CDEs.":[57,79,229],"METHODS:":[58],"We":[59,138],"propose":[60],"CDEMapper,":[61],"large":[63],"language":[64],"model":[65],"(LLM)-powered":[66],"designed":[69],"assist":[71,218],"in":[72],"NIH":[78,90,228,244],"CDEMapper":[80,152],"has":[81],"3":[82],"core":[83],"modules:":[84],"(1)":[85],"indexing":[87],"embeddings.":[89],"were":[92],"indexed":[93],"embedded":[95],"support":[97],"semantic":[98],"search;":[99],"(2)":[100],"recommendations.":[102],"The":[103,173,193],"combines":[105],"Elasticsearch":[106],"(BM25":[107],"methods)":[108],"with":[109,181,219,227],"GPT":[110,182,186],"services":[111,168],"recommend":[113],"candidate":[114],"their":[117,132,240],"permissible":[118],"values;":[119],"(3)":[121],"Human":[122],"review.":[123],"Users":[124],"review":[125],"select":[127],"best":[129,191],"match":[130],"for":[131],"value":[136],"sets.":[137],"evaluate":[139],"tool's":[141],"recommendation":[142],"accuracy":[143],"usability":[145,194],"against":[146],"manual":[147],"annotations":[148],"testing.":[150],"RESULTS:":[151],"offers":[153],"publicly":[155],"available,":[156],"LLM-powered,":[157],"intuitive":[159],"user":[160],"interface":[161],"that":[162,177],"consolidates":[163],"essential":[164],"advanced":[166],"into":[169],"streamlined":[171],"pipeline.":[172],"evaluation":[174],"results":[175],"demonstrated":[176],"augmented":[179],"BM25":[180],"embeddings":[183],"ranker":[187],"achieved":[188],"overall":[190],"performance.":[192],"test":[195],"also":[196],"highlighted":[197],"effectiveness":[199],"efficiency":[201],"our":[203],"tool.":[204],"DISCUSSIONS":[205],"AND":[206],"CONCLUSIONS:":[207],"work":[209],"opens":[210],"up":[211],"potential":[213],"using":[215],"LLMs":[216],"when":[222],"aligning":[223],"Additionally,":[230],"this":[231],"effort":[232],"helps":[233],"researchers":[234],"better":[235],"understand":[236],"gaps":[238],"while":[246],"promoting":[247],"reusability.":[249]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
