{"id":"https://openalex.org/W4409235791","doi":"https://doi.org/10.1093/jamia/ocaf045","title":"Evaluating the effectiveness of biomedical fine-tuning for large language models on clinical tasks","display_name":"Evaluating the effectiveness of biomedical fine-tuning for large language models on clinical tasks","publication_year":2025,"publication_date":"2025-04-07","ids":{"openalex":"https://openalex.org/W4409235791","doi":"https://doi.org/10.1093/jamia/ocaf045","pmid":"https://pubmed.ncbi.nlm.nih.gov/40190132"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocaf045","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocaf045","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12089759/","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5097357149","display_name":"Felix J. Dorfner","orcid":"https://orcid.org/0009-0003-5914-3233"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I4210127055","display_name":"Athinoula A. Martinos Center for Biomedical Imaging","ror":"https://ror.org/032q5ym94","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210127055","https://openalex.org/I48633490","https://openalex.org/I63966007"]},{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Felix J Dorfner","raw_affiliation_strings":["Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital and Harvard Medical School , Charlestown, MA 02129,","Charit\u00e9\u2014Universit\u00e4tsmedizin Berlin, Corporate Member of Freie Universit\u00e4t Berlin and Humboldt-Universit\u00e4t zu Berlin , Berlin 10117,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital and Harvard Medical School , Charlestown, MA 02129,","institution_ids":["https://openalex.org/I4210127055","https://openalex.org/I136199984","https://openalex.org/I4210087915"]},{"raw_affiliation_string":"Charit\u00e9\u2014Universit\u00e4tsmedizin Berlin, Corporate Member of Freie Universit\u00e4t Berlin and Humboldt-Universit\u00e4t zu Berlin , Berlin 10117,","institution_ids":["https://openalex.org/I39343248","https://openalex.org/I7877124","https://openalex.org/I75951250"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007940140","display_name":"Amin Dada","orcid":"https://orcid.org/0000-0003-4016-7799"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Amin Dada","raw_affiliation_strings":["Institute for AI in Medicine (IKIM), University Hospital Essen (A\u00f6R) , Essen 45131,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for AI in Medicine (IKIM), University Hospital Essen (A\u00f6R) , Essen 45131,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028916711","display_name":"Felix Busch","orcid":"https://orcid.org/0000-0001-9770-8555"},"institutions":[{"id":"https://openalex.org/I2802619606","display_name":"TUM Klinikum","ror":"https://ror.org/04jc43x05","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802619606","https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Felix Busch","raw_affiliation_strings":["Department of Radiology, Klinikum Rechts Der Isar, Technical University Munich , Munich 81675,"],"raw_orcid":"https://orcid.org/0000-0001-9770-8555","affiliations":[{"raw_affiliation_string":"Department of Radiology, Klinikum Rechts Der Isar, Technical University Munich , Munich 81675,","institution_ids":["https://openalex.org/I2802619606"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051070119","display_name":"Marcus R. Makowski","orcid":"https://orcid.org/0000-0001-8778-647X"},"institutions":[{"id":"https://openalex.org/I2802619606","display_name":"TUM Klinikum","ror":"https://ror.org/04jc43x05","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802619606","https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marcus R Makowski","raw_affiliation_strings":["Department of Radiology, Klinikum Rechts Der Isar, Technical University Munich , Munich 81675,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology, Klinikum Rechts Der Isar, Technical University Munich , Munich 81675,","institution_ids":["https://openalex.org/I2802619606"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027184324","display_name":"Tianyu Han","orcid":"https://orcid.org/0000-0002-0792-9272"},"institutions":[{"id":"https://openalex.org/I4210120689","display_name":"Universit\u00e4tsklinikum Aachen","ror":"https://ror.org/02gm5zw39","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210120689"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tianyu Han","raw_affiliation_strings":["Department of Diagnostic and Interventional Radiology, University Hospital Aachen , Aachen 52074,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Diagnostic and Interventional Radiology, University Hospital Aachen , Aachen 52074,","institution_ids":["https://openalex.org/I4210120689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016512818","display_name":"Daniel Truhn","orcid":"https://orcid.org/0000-0002-9605-0728"},"institutions":[{"id":"https://openalex.org/I4210120689","display_name":"Universit\u00e4tsklinikum Aachen","ror":"https://ror.org/02gm5zw39","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210120689"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniel Truhn","raw_affiliation_strings":["Department of Diagnostic and Interventional Radiology, University Hospital Aachen , Aachen 52074,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Diagnostic and Interventional Radiology, University Hospital Aachen , Aachen 52074,","institution_ids":["https://openalex.org/I4210120689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017161970","display_name":"Jens Kleesiek","orcid":"https://orcid.org/0000-0001-8686-0682"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I200332995","display_name":"TU Dortmund University","ror":"https://ror.org/01k97gp34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200332995"]},{"id":"https://openalex.org/I4210119759","display_name":"Essen University Hospital","ror":"https://ror.org/02na8dn90","country_code":"DE","type":"funder","lineage":["https://openalex.org/I4210119759"]},{"id":"https://openalex.org/I4210127473","display_name":"Cancer Research Center","ror":"https://ror.org/03fbwjm33","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210127473"]},{"id":"https://openalex.org/I4391767962","display_name":"Deutsches Konsortium f\u00fcr Translationale Krebsforschung","ror":"https://ror.org/02pqn3g31","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4391767962","https://openalex.org/I4405256427"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Jens Kleesiek","raw_affiliation_strings":["Cancer Research Center Cologne Essen (CCCE), West German Cancer Center Essen, University Hospital Essen (A\u00f6R) , Essen 45147,","Department of Physics, TU Dortmund , Dortmund 44227,","German Cancer Consortium (DKTK, Partner Site Essen) , Heidelberg,","Institute for AI in Medicine (IKIM), University Hospital Essen (A\u00f6R) , Essen 45131,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Research Center Cologne Essen (CCCE), West German Cancer Center Essen, University Hospital Essen (A\u00f6R) , Essen 45147,","institution_ids":["https://openalex.org/I4210119759","https://openalex.org/I4210127473"]},{"raw_affiliation_string":"Department of Physics, TU Dortmund , Dortmund 44227,","institution_ids":["https://openalex.org/I200332995"]},{"raw_affiliation_string":"German Cancer Consortium (DKTK, Partner Site Essen) , Heidelberg,","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I4391767962"]},{"raw_affiliation_string":"Institute for AI in Medicine (IKIM), University Hospital Essen (A\u00f6R) , Essen 45131,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009516496","display_name":"Madhumita Sushil","orcid":"https://orcid.org/0000-0001-7884-0526"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Madhumita Sushil","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California, San Francisco , San Francisco, CA 94158,"],"raw_orcid":"https://orcid.org/0000-0001-7884-0526","affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California, San Francisco , San Francisco, CA 94158,","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005164520","display_name":"Lisa C. Adams","orcid":"https://orcid.org/0000-0001-5836-4542"},"institutions":[{"id":"https://openalex.org/I2802619606","display_name":"TUM Klinikum","ror":"https://ror.org/04jc43x05","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802619606","https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Lisa C Adams","raw_affiliation_strings":["Department of Radiology, Klinikum Rechts Der Isar, Technical University Munich , Munich 81675,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology, Klinikum Rechts Der Isar, Technical University Munich , Munich 81675,","institution_ids":["https://openalex.org/I2802619606"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006318966","display_name":"Keno K. Bressem","orcid":"https://orcid.org/0000-0001-9249-8624"},"institutions":[{"id":"https://openalex.org/I2802619606","display_name":"TUM Klinikum","ror":"https://ror.org/04jc43x05","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802619606","https://openalex.org/I62916508"]},{"id":"https://openalex.org/I4210148371","display_name":"Deutsches Herzzentrum M\u00fcnchen","ror":"https://ror.org/04hbwba26","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210148371","https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Keno K Bressem","raw_affiliation_strings":["Department of Radiology, Klinikum Rechts Der Isar, Technical University Munich , Munich 81675,","German Heart Center Munich, Technical University Munich , Munich 80636,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology, Klinikum Rechts Der Isar, Technical University Munich , Munich 81675,","institution_ids":["https://openalex.org/I2802619606"]},{"raw_affiliation_string":"German Heart Center Munich, Technical University Munich , Munich 80636,","institution_ids":["https://openalex.org/I4210148371"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5005164520"],"corresponding_institution_ids":["https://openalex.org/I2802619606"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":12.8984,"has_fulltext":true,"cited_by_count":31,"citation_normalized_percentile":{"value":0.98789185,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"32","issue":"6","first_page":"1015","last_page":"1024"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.7081000208854675,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.7081000208854675,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.08839999884366989,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.04899999871850014,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5345643758773804},{"id":"https://openalex.org/keywords/automatic-summarization","display_name":"Automatic summarization","score":0.49973225593566895},{"id":"https://openalex.org/keywords/language-model","display_name":"Language model","score":0.4552049934864044},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.4477236866950989},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.31898486614227295}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5345643758773804},{"id":"https://openalex.org/C170858558","wikidata":"https://www.wikidata.org/wiki/Q1394144","display_name":"Automatic summarization","level":2,"score":0.49973225593566895},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.4552049934864044},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.4477236866950989},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31898486614227295},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/jamia/ocaf045","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocaf045","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:40190132","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40190132","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:publications.rwth-aachen.de:1030888","is_oa":false,"landing_page_url":"https://publications.rwth-aachen.de/record/1030888","pdf_url":null,"source":{"id":"https://openalex.org/S4306401033","display_name":"RWTH Publications (RWTH Aachen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887968799","host_organization_name":"RWTH Aachen University","host_organization_lineage":["https://openalex.org/I887968799"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association 32(6), 1015-1024 (2025). doi:10.1093/jamia/ocaf045","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:bibliographie.ub.uni-due.de:ubo_mods_00232007","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pubmed/40190132","pdf_url":null,"source":{"id":"https://openalex.org/S7407055102","display_name":"Universit\u00e4tsbibliographie, Universit\u00e4t Duisburg-Essen","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Artikel/Aufsatz"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1784054","is_oa":false,"landing_page_url":"https://mediatum.ub.tum.de/1784054","pdf_url":null,"source":{"id":"https://openalex.org/S4377196330","display_name":"mediaTUM  (Technical University of Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12089759","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12089759/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:12089759","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12089759/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.6100000143051147}],"awards":[],"funders":[{"id":"https://openalex.org/F4320308316","display_name":"Institute for Advanced Study","ror":"https://ror.org/00f809463"},{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320323383","display_name":"Technische Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/02kkvpp62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W2396881363","https://openalex.org/W2560647685","https://openalex.org/W2911489562","https://openalex.org/W3027879771","https://openalex.org/W4205164650","https://openalex.org/W4319662928","https://openalex.org/W4384561707","https://openalex.org/W4389519219","https://openalex.org/W4392915068","https://openalex.org/W4394782456","https://openalex.org/W4402559330","https://openalex.org/W4403813762","https://openalex.org/W6777615688"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2366403280","https://openalex.org/W1495108544","https://openalex.org/W2091301346","https://openalex.org/W3148229873","https://openalex.org/W4389760904","https://openalex.org/W2150160875","https://openalex.org/W2351187795"],"abstract_inverted_index":{"OBJECTIVES:":[0],"Large":[1],"language":[2],"models":[3,140,154,174,211],"(LLMs)":[4],"have":[5],"shown":[6],"potential":[7],"in":[8,179],"biomedical":[9,104,137,153,187,203,234],"applications,":[10],"leading":[11],"to":[12,14,31,96,119,194],"efforts":[13],"fine-tune":[15],"them":[16],"on":[17,65,74,123,127,132,150,164,215,233],"domain-specific":[18],"data.":[19],"However,":[20],"the":[21,34,55,99,133,200,239],"effectiveness":[22],"of":[23,36,47,57,92,103,110,258],"this":[24],"approach":[25],"remains":[26],"unclear.":[27],"This":[28],"study":[29],"aims":[30],"critically":[32],"evaluate":[33],"performance":[35,56,143],"biomedically":[37,58],"fine-tuned":[38,59],"LLMs":[39,60,115,188,232],"against":[40,61],"their":[41,62],"general-purpose":[42,63,120,139,173,210],"counterparts":[43,64],"across":[44,169],"a":[45,89,107,191,223],"range":[46],"clinical":[48,66,76,85,228,256],"tasks.":[49,218],"MATERIALS":[50],"AND":[51],"METHODS:":[52],"We":[53,87],"evaluated":[54],"case":[67,134],"challenges":[68],"from":[69],"NEJM":[70],"and":[71,73,84,138,184,254],"JAMA,":[72],"multiple":[75],"tasks,":[77],"such":[78,244],"as":[79,209,245],"information":[80],"extraction,":[81],"document":[82],"summarization":[83],"coding.":[86,185],"used":[88],"diverse":[90],"set":[91],"benchmarks":[93],"specifically":[94],"chosen":[95],"be":[97,249],"outside":[98],"likely":[100],"fine-tuning":[101,204],"datasets":[102],"models,":[105,121],"ensuring":[106],"fair":[108],"assessment":[109],"generalization":[111],"capabilities.":[112],"RESULTS:":[113],"Biomedical":[114],"generally":[116],"underperformed":[117],"compared":[118],"especially":[122],"tasks":[124],"not":[125,237],"focused":[126],"probing":[128],"medical":[129,217],"knowledge.":[130],"While":[131],"challenges,":[135],"larger":[136],"showed":[141,155,190],"similar":[142],"(eg,":[144],"OpenBioLLM-70B:":[145],"66.4%":[146],"vs":[147,161],"Llama-3-70B-Instruct:":[148],"65%":[149],"JAMA),":[151],"smaller":[152],"more":[156,224],"pronounced":[157],"underperformance":[158],"(OpenBioLLM-8B:":[159],"30%":[160],"Llama-3-8B-Instruct:":[162],"64.3%":[163],"NEJM).":[165],"Similar":[166],"trends":[167],"appeared":[168],"CLUE":[170],"benchmarks,":[171],"with":[172],"often":[175],"achieving":[176],"higher":[177,192],"scores":[178],"text":[180],"generation,":[181],"question":[182],"answering,":[183],"Notably,":[186],"also":[189],"tendency":[193],"hallucinate.":[195],"DISCUSSION:":[196],"Our":[197],"findings":[198],"challenge":[199],"assumption":[201],"that":[202],"inherently":[205],"improves":[206],"LLM":[207],"performance,":[208],"consistently":[212],"performed":[213],"better":[214],"unseen":[216],"Retrieval-augmented":[219],"generation":[220],"may":[221,236],"offer":[222],"effective":[225,253],"strategy":[226],"for":[227,252],"adaptation.":[229],"CONCLUSION:":[230],"Fine-tuning":[231],"data":[235],"yield":[238],"anticipated":[240],"benefits.":[241],"Alternative":[242],"approaches,":[243],"retrieval":[246],"augmentation,":[247],"should":[248],"further":[250],"explored":[251],"reliable":[255],"integration":[257],"LLMs.":[259]},"counts_by_year":[{"year":2026,"cited_by_count":19},{"year":2025,"cited_by_count":12}],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2025-10-10T00:00:00"}
