{"id":"https://openalex.org/W4405617244","doi":"https://doi.org/10.1093/jamia/ocae308","title":"Lessons learned on information retrieval in electronic health records: a comparison of embedding models and pooling strategies","display_name":"Lessons learned on information retrieval in electronic health records: a comparison of embedding models and pooling strategies","publication_year":2024,"publication_date":"2024-12-20","ids":{"openalex":"https://openalex.org/W4405617244","doi":"https://doi.org/10.1093/jamia/ocae308","pmid":"https://pubmed.ncbi.nlm.nih.gov/39703187"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocae308","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocae308","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11756698/pdf/ocae308.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034128259","display_name":"Skatje Myers","orcid":"https://orcid.org/0000-0001-9524-8436"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Skatje Myers","raw_affiliation_strings":["Department of Medicine, University of Wisconsin-Madison , Madison, WI 53726,","Department of Medicine, University of Wisconsin-Madison, Madison, WI 53726, United States"],"raw_orcid":"https://orcid.org/0000-0001-9524-8436","affiliations":[{"raw_affiliation_string":"Department of Medicine, University of Wisconsin-Madison , Madison, WI 53726,","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Department of Medicine, University of Wisconsin-Madison, Madison, WI 53726, United States","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039901099","display_name":"Timothy A. Miller","orcid":"https://orcid.org/0000-0003-4513-403X"},"institutions":[{"id":"https://openalex.org/I1288882113","display_name":"Boston Children's Hospital","ror":"https://ror.org/00dvg7y05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1288882113"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Timothy A Miller","raw_affiliation_strings":["Computational Health Informatics Program, Boston Children\u2019s Hospital , Boston, MA 02215,","Department of Pediatrics, Harvard Medical School , Boston, MA 02215,","Computational Health Informatics Program, Boston Children's Hospital, Boston, MA 02215, United States","Department of Pediatrics, Harvard Medical School, Boston, MA 02215, United States"],"raw_orcid":"https://orcid.org/0000-0003-4513-403X","affiliations":[{"raw_affiliation_string":"Computational Health Informatics Program, Boston Children\u2019s Hospital , Boston, MA 02215,","institution_ids":["https://openalex.org/I1288882113"]},{"raw_affiliation_string":"Department of Pediatrics, Harvard Medical School , Boston, MA 02215,","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Computational Health Informatics Program, Boston Children's Hospital, Boston, MA 02215, United States","institution_ids":["https://openalex.org/I1288882113"]},{"raw_affiliation_string":"Department of Pediatrics, Harvard Medical School, Boston, MA 02215, United States","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101744555","display_name":"Yanjun Gao","orcid":"https://orcid.org/0000-0002-9341-7360"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yanjun Gao","raw_affiliation_strings":["Department of Biomedical Informatics, University of Colorado-Anschutz , Aurora, CO 80045,","Department of Biomedical Informatics, University of Colorado-Anschutz, Aurora, CO 80045, United States"],"raw_orcid":"https://orcid.org/0000-0002-9341-7360","affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Colorado-Anschutz , Aurora, CO 80045,","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Colorado-Anschutz, Aurora, CO 80045, United States","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088547412","display_name":"Matthew M. Churpek","orcid":"https://orcid.org/0000-0002-4030-5250"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew M Churpek","raw_affiliation_strings":["Department of Medicine, University of Wisconsin-Madison , Madison, WI 53726,","Department of Medicine, University of Wisconsin-Madison, Madison, WI 53726, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, University of Wisconsin-Madison , Madison, WI 53726,","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Department of Medicine, University of Wisconsin-Madison, Madison, WI 53726, United States","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022565043","display_name":"Anoop Mayampurath","orcid":"https://orcid.org/0000-0002-3010-6960"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anoop Mayampurath","raw_affiliation_strings":["Department of Medicine, University of Wisconsin-Madison , Madison, WI 53726,","Department of Medicine, University of Wisconsin-Madison, Madison, WI 53726, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, University of Wisconsin-Madison , Madison, WI 53726,","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Department of Medicine, University of Wisconsin-Madison, Madison, WI 53726, United States","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054031099","display_name":"Dmitriy Dligach","orcid":"https://orcid.org/0000-0002-2585-2707"},"institutions":[{"id":"https://openalex.org/I1925986","display_name":"Loyola University Chicago","ror":"https://ror.org/04b6x2g63","country_code":"US","type":"education","lineage":["https://openalex.org/I1925986"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dmitriy Dligach","raw_affiliation_strings":["Department of Computer Science, Loyola University Chicago , Chicago, IL 60626,","Department of Computer Science, Loyola University Chicago, Chicago, IL 60626, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Loyola University Chicago , Chicago, IL 60626,","institution_ids":["https://openalex.org/I1925986"]},{"raw_affiliation_string":"Department of Computer Science, Loyola University Chicago, Chicago, IL 60626, United States","institution_ids":["https://openalex.org/I1925986"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063499248","display_name":"Majid Afshar","orcid":"https://orcid.org/0000-0002-6368-4652"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Majid Afshar","raw_affiliation_strings":["Department of Medicine, University of Wisconsin-Madison , Madison, WI 53726,","Department of Medicine, University of Wisconsin-Madison, Madison, WI 53726, United States"],"raw_orcid":"https://orcid.org/0000-0002-6368-4652","affiliations":[{"raw_affiliation_string":"Department of Medicine, University of Wisconsin-Madison , Madison, WI 53726,","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Department of Medicine, University of Wisconsin-Madison, Madison, WI 53726, United States","institution_ids":["https://openalex.org/I135310074"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":6.2058,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.9659624,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"32","issue":"2","first_page":"357","last_page":"364"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10286","display_name":"Information Retrieval and Search Behavior","score":0.5935999751091003,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10286","display_name":"Information Retrieval and Search Behavior","score":0.5935999751091003,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.08579999953508377,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10737","display_name":"Health Literacy and Information Accessibility","score":0.08380000293254852,"subfield":{"id":"https://openalex.org/subfields/3600","display_name":"General Health Professions"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pooling","display_name":"Pooling","score":0.7890903949737549},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7872991561889648},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.6386169195175171},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6051139831542969},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5605874061584473},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4887232780456543},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.44649189710617065},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35814279317855835},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3266667127609253}],"concepts":[{"id":"https://openalex.org/C70437156","wikidata":"https://www.wikidata.org/wiki/Q7228652","display_name":"Pooling","level":2,"score":0.7890903949737549},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7872991561889648},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.6386169195175171},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6051139831542969},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5605874061584473},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4887232780456543},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.44649189710617065},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35814279317855835},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3266667127609253},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/jamia/ocae308","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocae308","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:39703187","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39703187","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11756698","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11756698/","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11756698/pdf/ocae308.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:11756698","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11756698/","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11756698/pdf/ocae308.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.6899999976158142}],"awards":[{"id":"https://openalex.org/G3041837563","display_name":null,"funder_award_id":"R01LM012973","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6874471945","display_name":null,"funder_award_id":"R01LM012973","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4405617244.pdf"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W2396881363","https://openalex.org/W3027879771","https://openalex.org/W3185951817","https://openalex.org/W4312220150","https://openalex.org/W4391876619","https://openalex.org/W4392186815","https://openalex.org/W4392883813","https://openalex.org/W4398225015","https://openalex.org/W6777615688"],"related_works":["https://openalex.org/W2953234277","https://openalex.org/W2626256601","https://openalex.org/W147410782","https://openalex.org/W2900413183","https://openalex.org/W4390975304","https://openalex.org/W3022252430","https://openalex.org/W4287804464","https://openalex.org/W3103989898","https://openalex.org/W3211292372","https://openalex.org/W803346624"],"abstract_inverted_index":{"OBJECTIVES:":[0],"Applying":[1],"large":[2,31],"language":[3],"models":[4,57,173,202,256],"(LLMs)":[5],"to":[6,13,39,120,174,211,231,251],"the":[7,14,43,65,104,115,118,126,165,198,225,253,284,289],"clinical":[8,66,290],"domain":[9],"is":[10],"challenging":[11],"due":[12],"context-heavy":[15],"nature":[16],"of":[17,106,128,171,178,184,200,227,255,278,286],"processing":[18],"medical":[19],"records.":[20],"Retrieval-augmented":[21],"generation":[22],"(RAG)":[23],"offers":[24],"a":[25,137],"solution":[26],"by":[27],"facilitating":[28],"reasoning":[29],"over":[30],"text":[32,119,160],"sources.":[33],"However,":[34,149],"there":[35],"are":[36,272],"many":[37],"parameters":[38],"optimize":[40],"in":[41,217,263,283],"just":[42],"retrieval":[44,63,74,133,179,195,279],"system":[45],"alone.":[46],"This":[47,246],"paper":[48],"presents":[49],"an":[50],"ablation":[51],"study":[52,247],"exploring":[53],"how":[54],"different":[55,220],"embedding":[56,95,107,129,185],"and":[58,90,97,117,158,189,197,234,257],"pooling":[59,108,167,187,258],"methods":[60,168],"affect":[61],"information":[62],"for":[64,110,169,236,241,260,274,288],"domain.":[67,291],"MATERIALS":[68],"AND":[69],"METHODS:":[70],"Evaluating":[71],"on":[72,76,114,203],"3":[73],"tasks":[75],"2":[77],"electronic":[78],"health":[79],"record":[80],"(EHR)":[81],"data":[82],"sources,":[83],"we":[84],"compared":[85],"7":[86],"models,":[87,92,96],"including":[88,146],"medical-":[89],"general-domain":[91,140],"specialized":[93],"encoder":[94],"off-the-shelf":[98],"decoder":[99],"LLMs.":[100],"We":[101,123,162],"also":[102,152,163],"examine":[103],"choice":[105,127,183,226],"strategy":[109],"each":[111,170,237,242],"model,":[112,141,186],"independently":[113],"query":[116,159,190,221,228],"retrieve.":[121],"RESULTS:":[122],"found":[124],"that":[125,224],"model":[130],"significantly":[131,193],"impacts":[132],"performance,":[134],"with":[135],"BGE,":[136],"comparatively":[138],"small":[139],"consistently":[142],"outperforming":[143],"all":[144],"others,":[145],"medical-specific":[147],"models.":[148],"our":[150],"findings":[151],"revealed":[153],"substantial":[154],"variability":[155,216],"across":[156,219],"datasets":[157],"phrasings.":[161],"determined":[164],"best":[166],"these":[172,201],"guide":[175,252],"future":[176],"design":[177],"systems.":[180],"DISCUSSION:":[181],"The":[182,214],"strategy,":[188],"formulation":[191],"can":[192],"impact":[194],"performance":[196,199,218],"other":[204],"public":[205],"benchmarks":[206],"does":[207],"not":[208],"necessarily":[209],"transfer":[210],"new":[212],"domains.":[213],"high":[215],"phrasings":[222],"suggests":[223],"may":[229],"need":[230],"be":[232],"tuned":[233],"validated":[235],"task,":[238],"or":[239],"even":[240],"institution's":[243],"EHR.":[244],"CONCLUSION:":[245],"provides":[248],"empirical":[249],"evidence":[250],"selection":[254],"strategies":[259],"RAG":[261],"frameworks":[262],"healthcare":[264],"applications.":[265],"Further":[266],"studies":[267],"such":[268,281],"as":[269,282],"this":[270],"one":[271],"vital":[273],"guiding":[275],"empirically-grounded":[276],"development":[277],"frameworks,":[280],"context":[285],"RAG,":[287]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":5}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
