{"id":"https://openalex.org/W4404318997","doi":"https://doi.org/10.1093/jamia/ocae284","title":"Oncointerpreter.ai enables interactive, personalized summarization of cancer diagnostics data","display_name":"Oncointerpreter.ai enables interactive, personalized summarization of cancer diagnostics data","publication_year":2024,"publication_date":"2024-11-13","ids":{"openalex":"https://openalex.org/W4404318997","doi":"https://doi.org/10.1093/jamia/ocae284","pmid":"https://pubmed.ncbi.nlm.nih.gov/39535891"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocae284","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocae284","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11648722/pdf/ocae284.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Arihant Tripathi","orcid":null},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Arihant Tripathi","raw_affiliation_strings":["Department of Computer Science, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","Rutgers Cancer Institute, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","Rutgers Cancer Institute, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States","Department of Computer Science, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Rutgers Cancer Institute, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Rutgers Cancer Institute, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Department of Computer Science, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055899792","display_name":"Brett L. Ecker","orcid":"https://orcid.org/0000-0003-2536-9261"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brett Ecker","raw_affiliation_strings":["Department of Surgery, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","Rutgers Cancer Institute, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","Rutgers Cancer Institute, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States","Department of Surgery, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Surgery, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Rutgers Cancer Institute, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Rutgers Cancer Institute, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Department of Surgery, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069585958","display_name":"Patrick M. Boland","orcid":"https://orcid.org/0000-0002-4213-8847"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Patrick Boland","raw_affiliation_strings":["Department of Pathology and Laboratory Medicine, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","Rutgers Cancer Institute, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","Rutgers Cancer Institute, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States","Department of Pathology and Laboratory Medicine, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Rutgers Cancer Institute, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Rutgers Cancer Institute, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016703557","display_name":"Saum Ghodoussipour","orcid":"https://orcid.org/0000-0001-8901-0210"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Saum Ghodoussipour","raw_affiliation_strings":["Department of Surgery, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","Rutgers Cancer Institute, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","Department of Surgery, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States","Rutgers Cancer Institute, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Surgery, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Rutgers Cancer Institute, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Department of Surgery, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Rutgers Cancer Institute, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Gregory R Riedlinger","orcid":null},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gregory R Riedlinger","raw_affiliation_strings":["Department of Pathology and Laboratory Medicine, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","Rutgers Cancer Institute, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","Rutgers Cancer Institute, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States","Department of Pathology and Laboratory Medicine, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Rutgers Cancer Institute, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Rutgers Cancer Institute, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036093562","display_name":"Subhajyoti De","orcid":"https://orcid.org/0000-0002-2313-8593"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Subhajyoti De","raw_affiliation_strings":["Department of Pathology and Laboratory Medicine, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","Rutgers Cancer Institute, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","Department of Pathology and Laboratory Medicine, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States","Rutgers Cancer Institute, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States"],"raw_orcid":"https://orcid.org/0000-0002-2313-8593","affiliations":[{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Rutgers Cancer Institute, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901,","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Rutgers Cancer Institute, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, United States","institution_ids":["https://openalex.org/I102322142"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5036093562"],"corresponding_institution_ids":["https://openalex.org/I102322142"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":0.6331,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.69445087,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"32","issue":"1","first_page":"129","last_page":"138"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.1843000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.1843000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.15809999406337738,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.1281999945640564,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/automatic-summarization","display_name":"Automatic summarization","score":0.749416708946228},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.717687726020813},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.6314454078674316},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6147904396057129},{"id":"https://openalex.org/keywords/medical-diagnosis","display_name":"Medical diagnosis","score":0.5140582323074341},{"id":"https://openalex.org/keywords/personalized-medicine","display_name":"Personalized medicine","score":0.5024003982543945},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.42401647567749023},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3228309452533722},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30408528447151184},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3035227060317993},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2201825976371765},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.1310696303844452}],"concepts":[{"id":"https://openalex.org/C170858558","wikidata":"https://www.wikidata.org/wiki/Q1394144","display_name":"Automatic summarization","level":2,"score":0.749416708946228},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.717687726020813},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.6314454078674316},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6147904396057129},{"id":"https://openalex.org/C534262118","wikidata":"https://www.wikidata.org/wiki/Q177719","display_name":"Medical diagnosis","level":2,"score":0.5140582323074341},{"id":"https://openalex.org/C32220436","wikidata":"https://www.wikidata.org/wiki/Q2072214","display_name":"Personalized medicine","level":2,"score":0.5024003982543945},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.42401647567749023},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3228309452533722},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30408528447151184},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3035227060317993},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2201825976371765},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.1310696303844452},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/jamia/ocae284","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocae284","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:39535891","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39535891","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:europepmc.org:11413246","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11648722","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11648722/pdf/ocae284.pdf","source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:11648722","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11648722/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:europepmc.org:11413246","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11648722","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11648722/pdf/ocae284.pdf","source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16","score":0.75}],"awards":[{"id":"https://openalex.org/G302445232","display_name":null,"funder_award_id":"R35GM149224","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320312581","display_name":"Rutgers, The State University of New Jersey","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404318997.pdf"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W2060427373","https://openalex.org/W2262414037","https://openalex.org/W2748710555","https://openalex.org/W2778626213","https://openalex.org/W2793237457","https://openalex.org/W2796408191","https://openalex.org/W2802851196","https://openalex.org/W2962351186","https://openalex.org/W2998702515","https://openalex.org/W3027879771","https://openalex.org/W3177617320","https://openalex.org/W3183312330","https://openalex.org/W4205164650","https://openalex.org/W4221112333","https://openalex.org/W4292814167","https://openalex.org/W4295951577","https://openalex.org/W4365143687","https://openalex.org/W4384071683","https://openalex.org/W4389600348","https://openalex.org/W4392193191","https://openalex.org/W4394003149","https://openalex.org/W6777615688","https://openalex.org/W6859939079"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2000169967","https://openalex.org/W2112883198"],"abstract_inverted_index":{"OBJECTIVES:":[0],"Cancer":[1],"diagnosis":[2],"comes":[3],"as":[4],"a":[5,75,92,97],"shock":[6],"to":[7,16,51,185,222],"many":[8,11],"patients,":[9],"and":[10,30,59,62,84,114,120,128,154,158,169,180,188,199],"of":[12,20,26,55,140,197,219],"them":[13],"feel":[14],"unprepared":[15],"handle":[17],"the":[18,21,27,34,38,82,147,163,204,211,227],"complexity":[19],"life-changing":[22],"event,":[23],"understand":[24],"technicalities":[25],"diagnostic":[28],"reports,":[29,123],"fully":[31],"engage":[32],"with":[33,106,192,215,226,229],"clinical":[35,40,56,113,121,143,213],"team":[36],"regarding":[37],"personalized":[39,53,138],"decision-making.":[41],"MATERIALS":[42],"AND":[43],"METHODS:":[44],"We":[45,102],"develop":[46],"Oncointerpreter.ai":[47,110,208],"an":[48],"interactive":[49],"resource":[50],"offer":[52],"summarization":[54,218],"cancer":[57,231],"genomic":[58],"pathological":[60],"data,":[61],"frame":[63],"questions":[64],"or":[65,174],"address":[66],"queries":[67,130,183],"about":[68],"therapeutic":[69],"opportunities":[70],"in":[71],"near-real":[72],"time":[73,190],"via":[74],"graphical":[76],"interface.":[77],"It":[78],"is":[79],"built":[80],"on":[81,91,131],"Mistral-7B":[83],"Llama-2":[85],"7B":[86],"large":[87],"language":[88],"models":[89],"trained":[90,95],"local":[93],"database":[94],"using":[96],"large,":[98],"curated":[99],"corpus.":[100],"RESULTS:":[101],"showcase":[103],"its":[104],"utility":[105],"case":[107],"studies,":[108],"where":[109],"extracted":[111],"key":[112],"molecular":[115],"attributes":[116],"from":[117],"deidentified":[118],"pathology":[119],"genomics":[122],"summarized":[124],"their":[125,151],"contextual":[126],"significance":[127],"answered":[129],"pertinent":[132],"treatment":[133],"options.":[134],"Oncointerpreter":[135],"also":[136,202],"provided":[137],"summary":[139],"currently":[141],"active":[142],"trials":[144],"that":[145,162],"match":[146],"patients'":[148],"disease":[149],"status,":[150],"selection":[152],"criteria,":[153],"geographic":[155],"locations.":[156],"Benchmarking":[157],"comparative":[159],"assessment":[160],"indicated":[161],"model":[164,198],"responses":[165],"were":[166],"generally":[167],"consistent,":[168],"hallucination,":[170],"ie,":[171],"factually":[172],"incorrect":[173],"nonsensical":[175],"response":[176,189,205],"was":[177],"rare;":[178],"treatment-":[179],"outcome":[181],"related":[182],"led":[184],"context-aware":[186],"responses,":[187],"correlated":[191],"verbosity.":[193],"DISCUSSION:":[194],"The":[195],"choice":[196],"domain-specific":[200],"training":[201],"affected":[203],"quality.":[206],"CONCLUSION:":[207],"can":[209],"aid":[210],"existing":[212],"care":[214],"interactive,":[216],"individualized":[217],"diagnostics":[220],"data":[221],"promote":[223],"informed":[224],"dialogs":[225],"patients":[228],"new":[230],"diagnoses.":[232],"AVAILABILITY:":[233],"https://github.com/Siris2314/Oncointerpreter.":[234]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
