{"id":"https://openalex.org/W4399994870","doi":"https://doi.org/10.1093/jamia/ocae157","title":"Disambiguation of acronyms in clinical narratives with large language models","display_name":"Disambiguation of acronyms in clinical narratives with large language models","publication_year":2024,"publication_date":"2024-06-25","ids":{"openalex":"https://openalex.org/W4399994870","doi":"https://doi.org/10.1093/jamia/ocae157","pmid":"https://pubmed.ncbi.nlm.nih.gov/38917444"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocae157","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocae157","pdf_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocae157/58330170/ocae157.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocae157/58330170/ocae157.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013834343","display_name":"Amila Kugic","orcid":"https://orcid.org/0000-0003-4674-0146"},"institutions":[{"id":"https://openalex.org/I202276237","display_name":"Medical University of Graz","ror":"https://ror.org/02n0bts35","country_code":"AT","type":"education","lineage":["https://openalex.org/I202276237"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Amila Kugic","raw_affiliation_strings":["Institute for Medical Informatics, Statistics and Documentation, Medical University of Graz , 8036 Graz, Austria"],"affiliations":[{"raw_affiliation_string":"Institute for Medical Informatics, Statistics and Documentation, Medical University of Graz , 8036 Graz, Austria","institution_ids":["https://openalex.org/I202276237"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101773732","display_name":"Stefan Schulz","orcid":"https://orcid.org/0000-0001-7222-3287"},"institutions":[{"id":"https://openalex.org/I202276237","display_name":"Medical University of Graz","ror":"https://ror.org/02n0bts35","country_code":"AT","type":"education","lineage":["https://openalex.org/I202276237"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Stefan Schulz","raw_affiliation_strings":["Institute for Medical Informatics, Statistics and Documentation, Medical University of Graz , 8036 Graz, Austria"],"affiliations":[{"raw_affiliation_string":"Institute for Medical Informatics, Statistics and Documentation, Medical University of Graz , 8036 Graz, Austria","institution_ids":["https://openalex.org/I202276237"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024709170","display_name":"Markus Kreuzthaler","orcid":"https://orcid.org/0000-0001-9824-9004"},"institutions":[{"id":"https://openalex.org/I202276237","display_name":"Medical University of Graz","ror":"https://ror.org/02n0bts35","country_code":"AT","type":"education","lineage":["https://openalex.org/I202276237"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Markus Kreuzthaler","raw_affiliation_strings":["Institute for Medical Informatics, Statistics and Documentation, Medical University of Graz , 8036 Graz, Austria"],"affiliations":[{"raw_affiliation_string":"Institute for Medical Informatics, Statistics and Documentation, Medical University of Graz , 8036 Graz, Austria","institution_ids":["https://openalex.org/I202276237"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5024709170"],"corresponding_institution_ids":["https://openalex.org/I202276237"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":{"value":3967,"currency":"USD","value_usd":3967},"fwci":2.5187,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.89595076,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"31","issue":"9","first_page":"2040","last_page":"2046"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9714999794960022,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9405999779701233,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/acronym","display_name":"Acronym","score":0.8968974947929382},{"id":"https://openalex.org/keywords/german","display_name":"German","score":0.8537222146987915},{"id":"https://openalex.org/keywords/portuguese","display_name":"Portuguese","score":0.8103317618370056},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.638547420501709},{"id":"https://openalex.org/keywords/readability","display_name":"Readability","score":0.6325042843818665},{"id":"https://openalex.org/keywords/narrative","display_name":"Narrative","score":0.6125396490097046},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5934882164001465},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5523902177810669},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39545655250549316},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.354488730430603},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.23926687240600586}],"concepts":[{"id":"https://openalex.org/C482391","wikidata":"https://www.wikidata.org/wiki/Q101244","display_name":"Acronym","level":2,"score":0.8968974947929382},{"id":"https://openalex.org/C154775046","wikidata":"https://www.wikidata.org/wiki/Q188","display_name":"German","level":2,"score":0.8537222146987915},{"id":"https://openalex.org/C35219183","wikidata":"https://www.wikidata.org/wiki/Q5146","display_name":"Portuguese","level":2,"score":0.8103317618370056},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.638547420501709},{"id":"https://openalex.org/C2778143727","wikidata":"https://www.wikidata.org/wiki/Q1820650","display_name":"Readability","level":2,"score":0.6325042843818665},{"id":"https://openalex.org/C199033989","wikidata":"https://www.wikidata.org/wiki/Q1318295","display_name":"Narrative","level":2,"score":0.6125396490097046},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5934882164001465},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5523902177810669},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39545655250549316},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.354488730430603},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.23926687240600586},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000004","descriptor_name":"Abbreviations as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000004","descriptor_name":"Abbreviations as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000004","descriptor_name":"Abbreviations as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000004","descriptor_name":"Abbreviations as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000004","descriptor_name":"Abbreviations as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033262","descriptor_name":"Narration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033262","descriptor_name":"Narration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033262","descriptor_name":"Narration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033262","descriptor_name":"Narration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033262","descriptor_name":"Narration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/jamia/ocae157","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocae157","pdf_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocae157/58330170/ocae157.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:38917444","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38917444","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11339513","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11339513","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11339513/pdf/ocae157.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/jamia/ocae157","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocae157","pdf_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocae157/58330170/ocae157.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8500000238418579,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G829792167","display_name":null,"funder_award_id":"101057062","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320309636","display_name":"University of Minnesota","ror":"https://ror.org/03grvy078"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320322882","display_name":"Pontificia Universidade Cat\u00f3lica do Paran\u00e1","ror":"https://ror.org/02x1vjk79"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4399994870.pdf"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1911952697","https://openalex.org/W3003406981","https://openalex.org/W3005576497","https://openalex.org/W3118304372","https://openalex.org/W3197008538","https://openalex.org/W3212156961","https://openalex.org/W4220763086","https://openalex.org/W4287570254","https://openalex.org/W4319301505","https://openalex.org/W4321002059","https://openalex.org/W4368367885","https://openalex.org/W4380887490","https://openalex.org/W4385381606","https://openalex.org/W4385571470","https://openalex.org/W4385571763","https://openalex.org/W4385573087","https://openalex.org/W4387865692","https://openalex.org/W4387880927","https://openalex.org/W4388007786","https://openalex.org/W4388753652","https://openalex.org/W4396745117","https://openalex.org/W6785828526","https://openalex.org/W6857039480","https://openalex.org/W6858763398"],"related_works":["https://openalex.org/W4224143833","https://openalex.org/W2768246685","https://openalex.org/W2599055196","https://openalex.org/W1964661231","https://openalex.org/W4254960163","https://openalex.org/W3110264473","https://openalex.org/W4317856743","https://openalex.org/W4319323735","https://openalex.org/W2925962066","https://openalex.org/W2779863472"],"abstract_inverted_index":{"For":[0,21],"English":[1],"clinical":[2,15],"narratives,":[3],"acronym":[4,46],"resolution":[5],"by":[6,17],"GPT-4":[7],"can":[8],"be":[9,43],"recommended":[10,44],"to":[11],"improve":[12],"readability":[13],"of":[14],"text":[16],"patients":[18],"and":[19,23],"professionals.":[20],"German":[22],"Portuguese,":[24],"better":[25],"models":[26],"are":[27,32],"needed.":[28],"Llama":[29],"models,":[30],"which":[31],"particularly":[33],"interesting":[34],"for":[35,45],"processing":[36],"sensitive":[37],"content":[38],"on":[39],"premise,":[40],"cannot":[41],"yet":[42],"resolution.":[47]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
