{"id":"https://openalex.org/W4399854538","doi":"https://doi.org/10.1093/jamia/ocae146","title":"A comparative study of large language model-based zero-shot inference and task-specific supervised classification of breast cancer pathology reports","display_name":"A comparative study of large language model-based zero-shot inference and task-specific supervised classification of breast cancer pathology reports","publication_year":2024,"publication_date":"2024-06-20","ids":{"openalex":"https://openalex.org/W4399854538","doi":"https://doi.org/10.1093/jamia/ocae146"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocae146","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocae146","pdf_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocae146/58287293/ocae146.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocae146/58287293/ocae146.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009516496","display_name":"Madhumita Sushil","orcid":"https://orcid.org/0000-0001-7884-0526"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Madhumita Sushil","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California, San Francisco , San Francisco, CA 94158, United States"],"raw_orcid":"https://orcid.org/0000-0001-7884-0526","affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California, San Francisco , San Francisco, CA 94158, United States","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024959372","display_name":"Travis Zack","orcid":"https://orcid.org/0000-0002-1620-6455"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I4210167126","display_name":"UCSF Helen Diller Family Comprehensive Cancer Center","ror":"https://ror.org/05yndxy10","country_code":"US","type":"facility","lineage":["https://openalex.org/I180670191","https://openalex.org/I4210110664","https://openalex.org/I4210167126"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Travis Zack","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California, San Francisco , San Francisco, CA 94158, United States","Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco , San Francisco, CA 94158, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California, San Francisco , San Francisco, CA 94158, United States","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco , San Francisco, CA 94158, United States","institution_ids":["https://openalex.org/I4210167126","https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046846922","display_name":"Divneet Mandair","orcid":"https://orcid.org/0000-0002-4629-0387"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I4210167126","display_name":"UCSF Helen Diller Family Comprehensive Cancer Center","ror":"https://ror.org/05yndxy10","country_code":"US","type":"facility","lineage":["https://openalex.org/I180670191","https://openalex.org/I4210110664","https://openalex.org/I4210167126"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Divneet Mandair","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California, San Francisco , San Francisco, CA 94158, United States","Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco , San Francisco, CA 94158, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California, San Francisco , San Francisco, CA 94158, United States","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco , San Francisco, CA 94158, United States","institution_ids":["https://openalex.org/I4210167126","https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051079756","display_name":"Zhiwei Zheng","orcid":"https://orcid.org/0009-0002-6977-1770"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhiwei Zheng","raw_affiliation_strings":["University of California, Berkeley , Berkeley, CA 94720, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, Berkeley , Berkeley, CA 94720, United States","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044308761","display_name":"Ahmed Wali","orcid":null},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ahmed Wali","raw_affiliation_strings":["University of California, Berkeley , Berkeley, CA 94720, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, Berkeley , Berkeley, CA 94720, United States","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100583552","display_name":"Yan-Ning Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yan-Ning Yu","raw_affiliation_strings":["University of California, Berkeley , Berkeley, CA 94720, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, Berkeley , Berkeley, CA 94720, United States","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113113430","display_name":"Yuwei Quan","orcid":null},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuwei Quan","raw_affiliation_strings":["University of California, Berkeley , Berkeley, CA 94720, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, Berkeley , Berkeley, CA 94720, United States","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009377274","display_name":"Dmytro Lituiev","orcid":"https://orcid.org/0000-0003-0543-0758"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dmytro Lituiev","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California, San Francisco , San Francisco, CA 94158, United States"],"raw_orcid":"https://orcid.org/0000-0003-0543-0758","affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California, San Francisco , San Francisco, CA 94158, United States","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036068985","display_name":"Atul J. Butte","orcid":"https://orcid.org/0000-0002-7433-2740"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I4210167126","display_name":"UCSF Helen Diller Family Comprehensive Cancer Center","ror":"https://ror.org/05yndxy10","country_code":"US","type":"facility","lineage":["https://openalex.org/I180670191","https://openalex.org/I4210110664","https://openalex.org/I4210167126"]},{"id":"https://openalex.org/I4387154595","display_name":"University of California Office of the President","ror":"https://ror.org/00dmfq477","country_code":"US","type":"education","lineage":["https://openalex.org/I4387154595"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Atul J Butte","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California, San Francisco , San Francisco, CA 94158, United States","Center for Data-driven Insights and Innovation, University of California, Office of the President , Oakland, CA 94607, United States","Department of Pediatrics, University of California, San Francisco , San Francisco, CA 94158, United States","Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco , San Francisco, CA 94158, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California, San Francisco , San Francisco, CA 94158, United States","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Center for Data-driven Insights and Innovation, University of California, Office of the President , Oakland, CA 94607, United States","institution_ids":["https://openalex.org/I4387154595"]},{"raw_affiliation_string":"Department of Pediatrics, University of California, San Francisco , San Francisco, CA 94158, United States","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco , San Francisco, CA 94158, United States","institution_ids":["https://openalex.org/I4210167126","https://openalex.org/I180670191"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5009516496"],"corresponding_institution_ids":["https://openalex.org/I180670191"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":{"value":3967,"currency":"USD","value_usd":3967},"fwci":12.6907,"has_fulltext":true,"cited_by_count":39,"citation_normalized_percentile":{"value":0.98956049,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"31","issue":"10","first_page":"2315","last_page":"2327"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7422482371330261},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6766732931137085},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6209356784820557},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6149882674217224},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5954911708831787},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.4743203818798065},{"id":"https://openalex.org/keywords/f1-score","display_name":"F1 score","score":0.45620959997177124},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.39038437604904175}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7422482371330261},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6766732931137085},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6209356784820557},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6149882674217224},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5954911708831787},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.4743203818798065},{"id":"https://openalex.org/C148524875","wikidata":"https://www.wikidata.org/wiki/Q6975395","display_name":"F1 score","level":2,"score":0.45620959997177124},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.39038437604904175},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/jamia/ocae146","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocae146","pdf_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocae146/58287293/ocae146.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt06p015n5","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/06p015n5","pdf_url":"https://escholarship.org/content/qt06p015n5/qt06p015n5.pdf","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of the American Medical Informatics Association, vol 31, iss 10","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11413420","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11413420","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11413420/pdf/ocae146.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/jamia/ocae146","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocae146","pdf_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocae146/58287293/ocae146.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1814800902","display_name":null,"funder_award_id":"U01FD005978","funder_id":"https://openalex.org/F4320332744","funder_display_name":"Center of Excellence in Regulatory Science and Innovation"},{"id":"https://openalex.org/G2342450115","display_name":null,"funder_award_id":"P30CA082103","funder_id":"https://openalex.org/F4320332622","funder_display_name":"University of California, San Francisco"},{"id":"https://openalex.org/G2895356224","display_name":null,"funder_award_id":"TR001872","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5133976721","display_name":null,"funder_award_id":"P30CA082103","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G5437152916","display_name":null,"funder_award_id":"UL1 TR001872","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6245908341","display_name":null,"funder_award_id":"UL1 TR001872","funder_id":"https://openalex.org/F4320332622","funder_display_name":"University of California, San Francisco"},{"id":"https://openalex.org/G7022792414","display_name":null,"funder_award_id":"U01FD005978","funder_id":"https://openalex.org/F4320332163","funder_display_name":"U.S. Food and Drug Administration"},{"id":"https://openalex.org/G8881677771","display_name":null,"funder_award_id":"P30CA082103","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332163","display_name":"U.S. Food and Drug Administration","ror":"https://ror.org/034xvzb47"},{"id":"https://openalex.org/F4320332622","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54"},{"id":"https://openalex.org/F4320332744","display_name":"Center of Excellence in Regulatory Science and Innovation","ror":"https://ror.org/05vzafd60"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4399854538.pdf"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W2098690513","https://openalex.org/W2888620177","https://openalex.org/W3101216323","https://openalex.org/W4210764005","https://openalex.org/W4212774754","https://openalex.org/W4225335710","https://openalex.org/W4281557260","https://openalex.org/W4289531747","https://openalex.org/W4310964482","https://openalex.org/W4312113143","https://openalex.org/W4383223222","https://openalex.org/W4386865118","https://openalex.org/W4387232979","https://openalex.org/W4388007786","https://openalex.org/W4388011452","https://openalex.org/W4388525110","https://openalex.org/W4388608412","https://openalex.org/W4389205282","https://openalex.org/W4389524025","https://openalex.org/W4389792145","https://openalex.org/W4390510163","https://openalex.org/W4390704928","https://openalex.org/W4390745503","https://openalex.org/W4391292768","https://openalex.org/W4391876619","https://openalex.org/W4391973028","https://openalex.org/W4392643126","https://openalex.org/W4392740458","https://openalex.org/W4392986561","https://openalex.org/W4393994738","https://openalex.org/W6838865847"],"related_works":["https://openalex.org/W3193043704","https://openalex.org/W4386259002","https://openalex.org/W1546989560","https://openalex.org/W3171520305","https://openalex.org/W3135126032","https://openalex.org/W1924178503","https://openalex.org/W4308716060","https://openalex.org/W4280648719","https://openalex.org/W4386937079","https://openalex.org/W2901774584"],"abstract_inverted_index":{"Abstract":[0],"Objective":[1],"Although":[2],"supervised":[3,86,124],"machine":[4],"learning":[5,34],"is":[6,23,202],"popular":[7],"for":[8,48,235],"information":[9],"extraction":[10],"from":[11,154,158],"clinical":[12,228,250],"notes,":[13],"creating":[14],"large":[15,26,181,210,236],"annotated":[16,182,211,237],"datasets":[17,183,212],"requires":[18],"extensive":[19],"domain":[20],"expertise":[21],"and":[22,53,82,101,157,160,164,247],"time-consuming.":[24],"Meanwhile,":[25],"language":[27],"models":[28,208],"(LLMs)":[29],"have":[30],"demonstrated":[31,144,219],"promising":[32],"transfer":[33],"capability.":[35],"In":[36],"this":[37],"study,":[38],"we":[39],"explored":[40],"whether":[41],"recent":[42],"LLMs":[43,143,188,201],"could":[44],"reduce":[45,190],"the":[46,76,102,110,122,174,191,198,204,220,225,233,242],"need":[47,234],"large-scale":[49],"data":[50,194],"annotations.":[51],"Materials":[52],"Methods":[54],"We":[55],"curated":[56],"a":[57],"dataset":[58],"of":[59,75,89,130,193,200,206,227,244],"769":[60],"breast":[61],"cancer":[62],"pathology":[63],"reports,":[64],"manually":[65],"labeled":[66],"with":[67,84,98,134,138,209],"12":[68,108],"categories,":[69],"to":[70,170,173,222],"compare":[71],"zero-shot":[72],"classification":[73,87],"capability":[74],"following":[77],"LLMs:":[78],"GPT-4,":[79],"GPT-3.5,":[80],"Starling,":[81],"ClinicalCamel,":[83],"task-specific":[85],"performance":[88],"3":[90],"models:":[91],"random":[92],"forests,":[93],"long":[94],"short-term":[95],"memory":[96],"networks":[97],"attention":[99],"(LSTM-Att),":[100],"UCSF-BERT":[103],"model.":[104],"Results":[105],"Across":[106],"all":[107],"tasks,":[109],"GPT-4":[111,148,218],"model":[112],"performed":[113],"either":[114],"significantly":[115],"better":[116],"than":[117],"or":[118],"as":[119,121],"well":[120],"best":[123],"model,":[125],"LSTM-Att":[126,166],"(average":[127],"macro":[128],"F1-score":[129],"0.86":[131],"vs":[132],"0.75),":[133],"advantage":[135],"on":[136],"tasks":[137,179],"high":[139],"label":[140],"imbalance.":[141],"Other":[142],"poor":[145,171],"performance.":[146],"Frequent":[147],"error":[149],"categories":[150],"included":[151],"incorrect":[152],"inferences":[153],"multiple":[155],"samples":[156],"history,":[159],"complex":[161],"task":[162],"design,":[163],"several":[165],"errors":[167],"were":[168],"related":[169],"generalization":[172],"test":[175],"set.":[176],"Discussion":[177],"On":[178],"where":[180],"cannot":[184],"be":[185],"easily":[186],"collected,":[187],"can":[189,213],"burden":[192],"labeling.":[195],"However,":[196],"if":[197],"use":[199,205],"prohibitive,":[203],"simpler":[207],"provide":[214],"comparable":[215],"results.":[216],"Conclusions":[217],"potential":[221],"speed":[223],"up":[224],"execution":[226],"NLP":[229],"studies":[230],"by":[231],"reducing":[232],"datasets.":[238],"This":[239],"may":[240],"increase":[241],"utilization":[243],"NLP-based":[245],"variables":[246],"outcomes":[248],"in":[249],"studies.":[251]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":25},{"year":2024,"cited_by_count":8}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
