{"id":"https://openalex.org/W4398265013","doi":"https://doi.org/10.1093/jamia/ocae115","title":"CoRTEx: contrastive learning for representing terms via explanations with applications on constructing biomedical knowledge graphs","display_name":"CoRTEx: contrastive learning for representing terms via explanations with applications on constructing biomedical knowledge graphs","publication_year":2024,"publication_date":"2024-05-23","ids":{"openalex":"https://openalex.org/W4398265013","doi":"https://doi.org/10.1093/jamia/ocae115","pmid":"https://pubmed.ncbi.nlm.nih.gov/38777805"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocae115","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocae115","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11339518/pdf/ocae115.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017881866","display_name":"Huaiyuan Ying","orcid":"https://orcid.org/0000-0001-7959-2093"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huaiyuan Ying","raw_affiliation_strings":["Center for Statistical Science, Department of Industrial Engineering, Tsinghua University , Beijing, 100084, China"],"raw_orcid":"https://orcid.org/0000-0001-7959-2093","affiliations":[{"raw_affiliation_string":"Center for Statistical Science, Department of Industrial Engineering, Tsinghua University , Beijing, 100084, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071925457","display_name":"Zhengyun Zhao","orcid":"https://orcid.org/0000-0001-9425-7752"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhengyun Zhao","raw_affiliation_strings":["Center for Statistical Science, Department of Industrial Engineering, Tsinghua University , Beijing, 100084, China"],"raw_orcid":"https://orcid.org/0000-0001-9425-7752","affiliations":[{"raw_affiliation_string":"Center for Statistical Science, Department of Industrial Engineering, Tsinghua University , Beijing, 100084, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070818431","display_name":"Yang Zhao","orcid":"https://orcid.org/0000-0001-5883-2799"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Zhao","raw_affiliation_strings":["Weiyang College, Tsinghua University , Beijing, 100084, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Weiyang College, Tsinghua University , Beijing, 100084, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072634415","display_name":"Sihang Zeng","orcid":"https://orcid.org/0009-0003-2921-829X"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sihang Zeng","raw_affiliation_strings":["Department of Biomedical Informatics and Medical Education, University of Washington , Seattle, WA 98195, United States"],"raw_orcid":"https://orcid.org/0009-0003-2921-829X","affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics and Medical Education, University of Washington , Seattle, WA 98195, United States","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040501126","display_name":"Sheng Yu","orcid":"https://orcid.org/0000-0002-6347-0507"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Sheng Yu","raw_affiliation_strings":["Center for Statistical Science, Department of Industrial Engineering, Tsinghua University , Beijing, 100084, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Statistical Science, Department of Industrial Engineering, Tsinghua University , Beijing, 100084, China","institution_ids":["https://openalex.org/I99065089"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5040501126"],"corresponding_institution_ids":["https://openalex.org/I99065089"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":1.1042,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.76199429,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"31","issue":"9","first_page":"1912","last_page":"1920"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.557200014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.557200014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.14959999918937683,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.11840000003576279,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.8400654792785645},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7592625617980957},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.681384801864624},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5874277949333191},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5477209091186523},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5186306834220886},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.46569502353668213},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4650458097457886},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4645386040210724},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.4638887047767639},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32568788528442383},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.18195360898971558},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.096316397190094}],"concepts":[{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.8400654792785645},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7592625617980957},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.681384801864624},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5874277949333191},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5477209091186523},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5186306834220886},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.46569502353668213},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4650458097457886},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4645386040210724},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.4638887047767639},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32568788528442383},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.18195360898971558},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.096316397190094},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/jamia/ocae115","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocae115","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:38777805","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38777805","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11339518","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11339518","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11339518/pdf/ocae115.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:11339518","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11339518","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11339518/pdf/ocae115.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G2537948299","display_name":null,"funder_award_id":"12171270","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6344158767","display_name":null,"funder_award_id":"Z190024","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7766538502","display_name":null,"funder_award_id":"Z190024","funder_id":"https://openalex.org/F4320322919","funder_display_name":"Natural Science Foundation of Beijing Municipality"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322919","display_name":"Natural Science Foundation of Beijing Municipality","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4398265013.pdf"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W2125531986","https://openalex.org/W2159583324","https://openalex.org/W2509591188","https://openalex.org/W2998702515","https://openalex.org/W3033896008","https://openalex.org/W3080427797","https://openalex.org/W3096403953","https://openalex.org/W4200481829","https://openalex.org/W4225145927","https://openalex.org/W4288089799","https://openalex.org/W4294908374","https://openalex.org/W4309440997","https://openalex.org/W4318983406","https://openalex.org/W4366989525","https://openalex.org/W4387425757","https://openalex.org/W4388409299","https://openalex.org/W4389894040","https://openalex.org/W6769627184"],"related_works":["https://openalex.org/W2064177607","https://openalex.org/W2127299687","https://openalex.org/W1801798365","https://openalex.org/W1506177826","https://openalex.org/W2532736362","https://openalex.org/W2157272674","https://openalex.org/W2726617685","https://openalex.org/W2103987857","https://openalex.org/W2914601452","https://openalex.org/W1562796463"],"abstract_inverted_index":{"OBJECTIVES:":[0],"Biomedical":[1,180],"Knowledge":[2],"Graphs":[3],"play":[4],"a":[5,18,33,104,129,139,145,150],"pivotal":[6],"role":[7],"in":[8,21,201],"various":[9],"biomedical":[10,239],"research":[11],"domains.":[12],"Concurrently,":[13],"term":[14,87,92,117],"clustering":[15,51,137,146,235],"emerges":[16],"as":[17],"crucial":[19],"step":[20],"constructing":[22],"these":[23],"knowledge":[24,69],"graphs,":[25],"aiming":[26],"to":[27,32,85,193,214],"identify":[28],"synonymous":[29],"terms.":[30,61],"Due":[31],"lack":[34],"of":[35,107,138],"knowledge,":[36],"previous":[37],"contrastive":[38,114],"learning":[39],"models":[40,73,223],"trained":[41],"with":[42,190],"Unified":[43],"Medical":[44],"Language":[45],"System":[46,183],"(UMLS)":[47],"synonyms":[48],"struggle":[49],"at":[50],"difficult":[52],"terms":[53,109,177,213,236],"and":[54,75,89,118,122,149,167,224,230],"do":[55],"not":[56],"generalize":[57],"well":[58],"beyond":[59,226],"UMLS":[60,108],"In":[62],"this":[63],"work,":[64],"we":[65,172],"leverage":[66],"the":[67,160,168,179,198],"world":[68],"from":[70,178,208],"large":[71],"language":[72],"(LLMs)":[74],"propose":[76],"Contrastive":[77],"Learning":[78],"for":[79,103,135,234,237],"Representing":[80],"Terms":[81],"via":[82],"Explanations":[83],"(CoRTEx)":[84],"enhance":[86],"representation":[88],"significantly":[90],"improves":[91],"clustering.":[93],"MATERIALS":[94],"AND":[95],"METHODS:":[96],"The":[97],"model":[98,157],"training":[99,228],"involves":[100],"generating":[101],"explanations":[102],"cleaned":[105],"subset":[106],"using":[110],"ChatGPT.":[111,194],"We":[112,143],"employ":[113],"learning,":[115],"considering":[116],"explanation":[119],"embeddings":[120,166],"simultaneously,":[121],"progressively":[123],"introduce":[124],"hard":[125,151],"negative":[126,152],"samples.":[127],"Additionally,":[128],"ChatGPT-assisted":[130],"BIRCH":[131,170],"algorithm":[132],"is":[133,232],"designed":[134],"efficient":[136],"new":[140],"ontology.":[141],"RESULTS:":[142],"established":[144],"test":[147,153],"set":[148],"set,":[154,229],"where":[155],"our":[156],"consistently":[158],"achieves":[159],"highest":[161],"F1":[162],"score.":[163],"With":[164],"CoRTEx":[165,217],"modified":[169],"algorithm,":[171],"grouped":[173],"35":[174],"580":[175],"932":[176],"Informatics":[181],"Ontology":[182],"(BIOS)":[184],"into":[185],"22":[186],"104":[187],"559":[188],"clusters":[189],"O(N)":[191],"queries":[192],"Case":[195],"studies":[196],"highlight":[197],"model's":[199],"efficacy":[200],"handling":[202],"challenging":[203],"samples,":[204],"aided":[205],"by":[206],"information":[207],"explanations.":[209],"CONCLUSION:":[210],"By":[211],"aligning":[212],"their":[215],"explanations,":[216],"demonstrates":[218],"superior":[219],"accuracy":[220],"over":[221],"benchmark":[222],"robustness":[225],"its":[227],"it":[231],"suitable":[233],"large-scale":[238],"ontologies.":[240]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
