{"id":"https://openalex.org/W4396895867","doi":"https://doi.org/10.1093/jamia/ocae101","title":"A taxonomy for advancing systematic error analysis in multi-site electronic health record-based clinical concept extraction","display_name":"A taxonomy for advancing systematic error analysis in multi-site electronic health record-based clinical concept extraction","publication_year":2024,"publication_date":"2024-05-14","ids":{"openalex":"https://openalex.org/W4396895867","doi":"https://doi.org/10.1093/jamia/ocae101","pmid":"https://pubmed.ncbi.nlm.nih.gov/38742455"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocae101","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocae101","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11187420/pdf/ocae101.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032226587","display_name":"Sunyang Fu","orcid":"https://orcid.org/0000-0003-1691-5179"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I2802423016","display_name":"WinnMed","ror":"https://ror.org/02s47w807","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2802423016"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sunyang Fu","raw_affiliation_strings":["Center for Translational AI Excellence and Applications in Medicine, University of Texas Health Science Center at Houston , Houston, TX 77030, United States","Department of AI and Informatics, Mayo Clinic , Rochester, MN 55902, United States"],"raw_orcid":"https://orcid.org/0000-0003-1691-5179","affiliations":[{"raw_affiliation_string":"Center for Translational AI Excellence and Applications in Medicine, University of Texas Health Science Center at Houston , Houston, TX 77030, United States","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"Department of AI and Informatics, Mayo Clinic , Rochester, MN 55902, United States","institution_ids":["https://openalex.org/I1330342723","https://openalex.org/I2802423016"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100406711","display_name":"Liwei Wang","orcid":"https://orcid.org/0000-0001-9970-8604"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I2802423016","display_name":"WinnMed","ror":"https://ror.org/02s47w807","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2802423016"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liwei Wang","raw_affiliation_strings":["Center for Translational AI Excellence and Applications in Medicine, University of Texas Health Science Center at Houston , Houston, TX 77030, United States","Department of AI and Informatics, Mayo Clinic , Rochester, MN 55902, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Translational AI Excellence and Applications in Medicine, University of Texas Health Science Center at Houston , Houston, TX 77030, United States","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"Department of AI and Informatics, Mayo Clinic , Rochester, MN 55902, United States","institution_ids":["https://openalex.org/I1330342723","https://openalex.org/I2802423016"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013043483","display_name":"Huan He","orcid":"https://orcid.org/0000-0003-1312-4195"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Huan He","raw_affiliation_strings":["Department of Biomedical Informatics & Data Science, Yale University , New Haven, CT 06520, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics & Data Science, Yale University , New Haven, CT 06520, United States","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003128469","display_name":"Andrew Wen","orcid":"https://orcid.org/0000-0001-9090-8028"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Wen","raw_affiliation_strings":["Center for Translational AI Excellence and Applications in Medicine, University of Texas Health Science Center at Houston , Houston, TX 77030, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Translational AI Excellence and Applications in Medicine, University of Texas Health Science Center at Houston , Houston, TX 77030, United States","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019653651","display_name":"Nansu Zong","orcid":"https://orcid.org/0000-0003-0066-9524"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I2802423016","display_name":"WinnMed","ror":"https://ror.org/02s47w807","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2802423016"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nansu Zong","raw_affiliation_strings":["Department of AI and Informatics, Mayo Clinic , Rochester, MN 55902, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of AI and Informatics, Mayo Clinic , Rochester, MN 55902, United States","institution_ids":["https://openalex.org/I1330342723","https://openalex.org/I2802423016"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062312480","display_name":"Anamika Kumari","orcid":"https://orcid.org/0000-0002-4467-6243"},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anamika Kumari","raw_affiliation_strings":["Department of Population and Quantitative Health Sciences, University of Massachusetts Chan Medical School , Boston, MA 01655, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Population and Quantitative Health Sciences, University of Massachusetts Chan Medical School , Boston, MA 01655, United States","institution_ids":["https://openalex.org/I166722992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047059244","display_name":"Feifan Liu","orcid":"https://orcid.org/0000-0003-0881-6365"},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Feifan Liu","raw_affiliation_strings":["Department of Population and Quantitative Health Sciences, University of Massachusetts Chan Medical School , Boston, MA 01655, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Population and Quantitative Health Sciences, University of Massachusetts Chan Medical School , Boston, MA 01655, United States","institution_ids":["https://openalex.org/I166722992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011070394","display_name":"Sicheng Zhou","orcid":"https://orcid.org/0000-0002-9846-1475"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sicheng Zhou","raw_affiliation_strings":["Division of Computational Health Sciences, University of Minnesota , Minneapolis, MN 55455, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Computational Health Sciences, University of Minnesota , Minneapolis, MN 55455, United States","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100421963","display_name":"Rui Zhang","orcid":"https://orcid.org/0000-0001-8258-3585"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rui Zhang","raw_affiliation_strings":["Division of Computational Health Sciences, University of Minnesota , Minneapolis, MN 55455, United States"],"raw_orcid":"https://orcid.org/0000-0001-8258-3585","affiliations":[{"raw_affiliation_string":"Division of Computational Health Sciences, University of Minnesota , Minneapolis, MN 55455, United States","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083925831","display_name":"Chenyu Li","orcid":"https://orcid.org/0000-0001-7434-6571"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chenyu Li","raw_affiliation_strings":["Department of Health Information Management, University of Pittsburgh , Pittsburgh, PA 15260, United States"],"raw_orcid":"https://orcid.org/0000-0001-7434-6571","affiliations":[{"raw_affiliation_string":"Department of Health Information Management, University of Pittsburgh , Pittsburgh, PA 15260, United States","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080116611","display_name":"Yanshan Wang","orcid":"https://orcid.org/0000-0003-4433-7839"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yanshan Wang","raw_affiliation_strings":["Department of Health Information Management, University of Pittsburgh , Pittsburgh, PA 15260, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Information Management, University of Pittsburgh , Pittsburgh, PA 15260, United States","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073303043","display_name":"Jennifer L. St. Sauver","orcid":"https://orcid.org/0000-0002-9789-8544"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer St Sauver","raw_affiliation_strings":["Department of Quantitative Health Sciences , Mayo Clinic, Rochester, MN 55902, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Quantitative Health Sciences , Mayo Clinic, Rochester, MN 55902, United States","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101585391","display_name":"Hongfang Liu","orcid":"https://orcid.org/0000-0003-2570-3741"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I2802423016","display_name":"WinnMed","ror":"https://ror.org/02s47w807","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2802423016"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongfang Liu","raw_affiliation_strings":["Center for Translational AI Excellence and Applications in Medicine, University of Texas Health Science Center at Houston , Houston, TX 77030, United States","Department of AI and Informatics, Mayo Clinic , Rochester, MN 55902, United States"],"raw_orcid":"https://orcid.org/0000-0003-2570-3741","affiliations":[{"raw_affiliation_string":"Center for Translational AI Excellence and Applications in Medicine, University of Texas Health Science Center at Houston , Houston, TX 77030, United States","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"Department of AI and Informatics, Mayo Clinic , Rochester, MN 55902, United States","institution_ids":["https://openalex.org/I1330342723","https://openalex.org/I2802423016"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063986559","display_name":"Sunghwan Sohn","orcid":"https://orcid.org/0000-0001-8256-2602"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I2802423016","display_name":"WinnMed","ror":"https://ror.org/02s47w807","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2802423016"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sunghwan Sohn","raw_affiliation_strings":["Department of AI and Informatics, Mayo Clinic , Rochester, MN 55902, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of AI and Informatics, Mayo Clinic , Rochester, MN 55902, United States","institution_ids":["https://openalex.org/I1330342723","https://openalex.org/I2802423016"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5063986559"],"corresponding_institution_ids":["https://openalex.org/I1330342723","https://openalex.org/I2802423016"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":3.0563,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.92178902,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"31","issue":"7","first_page":"1493","last_page":"1502"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.4302000105381012,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.4302000105381012,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.38850000500679016,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.04100000113248825,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.6203406453132629},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6028235554695129},{"id":"https://openalex.org/keywords/electronic-health-record","display_name":"Electronic health record","score":0.5285165309906006},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.47265875339508057},{"id":"https://openalex.org/keywords/health-records","display_name":"Health records","score":0.46856382489204407},{"id":"https://openalex.org/keywords/data-extraction","display_name":"Data extraction","score":0.4540565311908722},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4404878318309784},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41557687520980835},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.3582182228565216},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3385075330734253},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.11889228224754333},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.08577173948287964},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08292609453201294}],"concepts":[{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.6203406453132629},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6028235554695129},{"id":"https://openalex.org/C3020144179","wikidata":"https://www.wikidata.org/wiki/Q10871684","display_name":"Electronic health record","level":3,"score":0.5285165309906006},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.47265875339508057},{"id":"https://openalex.org/C3019952477","wikidata":"https://www.wikidata.org/wiki/Q1324077","display_name":"Health records","level":3,"score":0.46856382489204407},{"id":"https://openalex.org/C2777466982","wikidata":"https://www.wikidata.org/wiki/Q5227287","display_name":"Data extraction","level":3,"score":0.4540565311908722},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4404878318309784},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41557687520980835},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.3582182228565216},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3385075330734253},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.11889228224754333},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.08577173948287964},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08292609453201294},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019300","descriptor_name":"Medical Errors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D019300","descriptor_name":"Medical Errors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D019300","descriptor_name":"Medical Errors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D019300","descriptor_name":"Medical Errors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D019300","descriptor_name":"Medical Errors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D019300","descriptor_name":"Medical Errors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D019300","descriptor_name":"Medical Errors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D019300","descriptor_name":"Medical Errors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/jamia/ocae101","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocae101","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:38742455","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38742455","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11187420","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11187420","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11187420/pdf/ocae101.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},{"id":"pmh:oai:digitalcommons.library.tmc.edu:uthshis_docs-1655","is_oa":false,"landing_page_url":"https://digitalcommons.library.tmc.edu/uthshis_docs/668","pdf_url":null,"source":{"id":"https://openalex.org/S4306401994","display_name":"DigtalCommons @ Texas Medical Center Library (Texas Medical Center)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I867280407","host_organization_name":"The University of Texas Southwestern Medical Center","host_organization_lineage":["https://openalex.org/I867280407"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty, Staff and Student Publications","raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:11187420","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11187420","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11187420/pdf/ocae101.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.7400000095367432,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G2548798348","display_name":null,"funder_award_id":"R33 AG58738","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G3230266496","display_name":null,"funder_award_id":"R33 AG058738","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G3337951267","display_name":null,"funder_award_id":"R01 AG068007","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G5305777876","display_name":null,"funder_award_id":"R01 AG034676","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G6822330374","display_name":null,"funder_award_id":"R01 AG34676","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"}],"funders":[{"id":"https://openalex.org/F4320337337","display_name":"National Institute on Aging","ror":"https://ror.org/049v75w11"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4396895867.pdf"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1524642381","https://openalex.org/W2071478164","https://openalex.org/W2087769491","https://openalex.org/W2101013878","https://openalex.org/W2109977913","https://openalex.org/W2115570566","https://openalex.org/W2116093010","https://openalex.org/W2151363315","https://openalex.org/W2326291605","https://openalex.org/W2380567717","https://openalex.org/W2467995757","https://openalex.org/W2499706809","https://openalex.org/W2621075239","https://openalex.org/W2768488789","https://openalex.org/W2789244308","https://openalex.org/W2974146565","https://openalex.org/W3013721505","https://openalex.org/W3027879771","https://openalex.org/W3027986500","https://openalex.org/W3048179169","https://openalex.org/W3095585365","https://openalex.org/W3192495122","https://openalex.org/W4205801320","https://openalex.org/W4207027095","https://openalex.org/W4220989182","https://openalex.org/W4221109207","https://openalex.org/W4285104162","https://openalex.org/W4297372959","https://openalex.org/W4307219207","https://openalex.org/W4310964482","https://openalex.org/W4385684870","https://openalex.org/W4386056906","https://openalex.org/W6777615688"],"related_works":["https://openalex.org/W187932805","https://openalex.org/W4392490004","https://openalex.org/W1641026212","https://openalex.org/W2911982698","https://openalex.org/W2323588885","https://openalex.org/W3047677938","https://openalex.org/W2087134418","https://openalex.org/W2078646730","https://openalex.org/W4312053962","https://openalex.org/W176477701"],"abstract_inverted_index":{"BACKGROUND:":[0],"Error":[1],"analysis":[2,57,95,122,279],"plays":[3],"a":[4,11,24,62,103],"crucial":[5],"role":[6],"in":[7,157,234,281,309],"clinical":[8,15,124],"concept":[9,125],"extraction,":[10],"fundamental":[12],"subtask":[13],"within":[14],"natural":[16],"language":[17],"processing":[18],"(NLP).":[19],"The":[20,152,171,187,267],"process":[21,280],"typically":[22],"involves":[23],"manual":[25],"review":[26],"of":[27,43,64,75,259,276,291,301,314],"error":[28,56,94,115,121,137,189,194,199,235,278,315],"types,":[29,116],"such":[30],"as":[31],"contextual":[32],"and":[33,40,51,67,91,110,134,149,160,184,201,208,215,222,224,228,241,257,274,289,312],"linguistic":[34],"factors":[35],"contributing":[36],"to":[37,46,71,89,101,106,253,307],"their":[38],"occurrence,":[39],"the":[41,48,72,93,164,251,260,272,277,286,298,310],"identification":[42],"underlying":[44],"causes":[45],"refine":[47],"NLP":[49,65,292],"model":[50,205],"improve":[52],"its":[53],"performance.":[54],"Conducting":[55],"can":[58,270],"be":[59],"complex,":[60],"requiring":[61],"combination":[63],"expertise":[66],"domain-specific":[68],"knowledge.":[69],"Due":[70],"high":[73],"heterogeneity":[74],"electronic":[76],"health":[77],"record":[78],"(EHR)":[79],"settings":[80],"across":[81,237],"different":[82,177],"institutions,":[83],"challenges":[84],"may":[85],"arise":[86],"when":[87],"attempting":[88],"standardize":[90],"reproduce":[92],"process.":[96],"OBJECTIVES:":[97],"This":[98],"study":[99],"aims":[100],"facilitate":[102,271],"collaborative":[104],"effort":[105],"establish":[107],"common":[108],"definitions":[109],"taxonomies":[111],"for":[112,123],"capturing":[113],"diverse":[114],"fostering":[117],"community":[118,150,248],"consensus":[119],"on":[120,140],"extraction":[126],"tasks.":[127],"MATERIALS":[128],"AND":[129],"METHODS:":[130],"We":[131],"iteratively":[132],"developed":[133],"evaluated":[135],"an":[136],"taxonomy":[138,154,172,190,269],"based":[139],"existing":[141],"literature,":[142],"standards,":[143],"real-world":[144],"data,":[145],"multisite":[146],"case":[147],"evaluations,":[148],"feedback.":[151],"finalized":[153],"was":[155],"released":[156],"both":[158],".dtd":[159],".owl":[161],"formats":[162],"at":[163],"Open":[165],"Health":[166],"Natural":[167],"Language":[168],"Processing":[169],"Consortium.":[170],"is":[173],"compatible":[174],"with":[175,263],"several":[176],"open-source":[178],"annotation":[179,225],"tools,":[180],"including":[181,204,250],"MAE,":[182],"Brat,":[183],"MedTator.":[185],"RESULTS:":[186],"resulting":[188],"comprises":[191],"43":[192],"distinct":[193],"classes,":[195],"organized":[196],"into":[197],"6":[198],"dimensions":[200],"4":[202],"properties,":[203],"type":[206],"(symbolic":[207],"statistical":[209],"machine":[210],"learning),":[211],"evaluation":[212,217],"subject":[213],"(model":[214],"human),":[216],"level":[218],"(patient,":[219],"document,":[220],"sentence,":[221],"concept),":[223],"examples.":[226],"Internal":[227],"external":[229],"evaluations":[230],"revealed":[231],"strong":[232],"variations":[233],"types":[236],"methodological":[238],"approaches,":[239],"tasks,":[240],"EHR":[242],"settings.":[243],"Key":[244],"points":[245],"emerged":[246],"from":[247],"feedback,":[249],"need":[252],"enhancing":[254],"clarity,":[255],"generalizability,":[256],"usability":[258],"taxonomy,":[261],"along":[262],"dissemination":[264],"strategies.":[265],"CONCLUSION:":[266],"proposed":[268],"acceleration":[273],"standardization":[275,313],"multi-site":[282],"settings,":[283],"thus":[284],"improving":[285],"provenance,":[287],"interpretability,":[288],"portability":[290],"models.":[293],"Future":[294],"researchers":[295],"could":[296],"explore":[297],"potential":[299],"direction":[300],"developing":[302],"automated":[303],"or":[304],"semi-automated":[305],"methods":[306],"assist":[308],"classification":[311],"analysis.":[316]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
