{"id":"https://openalex.org/W4395067526","doi":"https://doi.org/10.1093/jamia/ocae074","title":"Large language models for biomedicine: foundations, opportunities, challenges, and best practices","display_name":"Large language models for biomedicine: foundations, opportunities, challenges, and best practices","publication_year":2024,"publication_date":"2024-04-24","ids":{"openalex":"https://openalex.org/W4395067526","doi":"https://doi.org/10.1093/jamia/ocae074","pmid":"https://pubmed.ncbi.nlm.nih.gov/38657567"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocae074","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocae074","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11339493/pdf/ocae074.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050196876","display_name":"Satya S. Sahoo","orcid":"https://orcid.org/0000-0001-9190-4256"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Satya S Sahoo","raw_affiliation_strings":["Department of Population and Quantitative Health Sciences, School of Medicine, Case Western Reserve University , Cleveland, OH 44122, United States"],"raw_orcid":"https://orcid.org/0000-0001-9190-4256","affiliations":[{"raw_affiliation_string":"Department of Population and Quantitative Health Sciences, School of Medicine, Case Western Reserve University , Cleveland, OH 44122, United States","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066318724","display_name":"Joseph M. Plasek","orcid":"https://orcid.org/0000-0002-9686-3876"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph M Plasek","raw_affiliation_strings":["Division of General Internal Medicine and Primary Care, Brigham and Women\u2019s Hospital, Harvard Medical School , Cambridge, MA 02115, United States"],"raw_orcid":"https://orcid.org/0000-0002-9686-3876","affiliations":[{"raw_affiliation_string":"Division of General Internal Medicine and Primary Care, Brigham and Women\u2019s Hospital, Harvard Medical School , Cambridge, MA 02115, United States","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084072550","display_name":"Hua Xu","orcid":"https://orcid.org/0000-0002-5274-4672"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hua Xu","raw_affiliation_strings":["Section of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510, United States"],"raw_orcid":"https://orcid.org/0000-0002-5274-4672","affiliations":[{"raw_affiliation_string":"Section of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT 06510, United States","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070926324","display_name":"\u00d6zlem Uzuner","orcid":"https://orcid.org/0000-0001-8011-9850"},"institutions":[{"id":"https://openalex.org/I162714631","display_name":"George Mason University","ror":"https://ror.org/02jqj7156","country_code":"US","type":"education","lineage":["https://openalex.org/I162714631"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"\u00d6zlem Uzuner","raw_affiliation_strings":["Department of Information Sciences and Technology, George Mason University , Fairfax, VA 22030, United States"],"raw_orcid":"https://orcid.org/0000-0001-8011-9850","affiliations":[{"raw_affiliation_string":"Department of Information Sciences and Technology, George Mason University , Fairfax, VA 22030, United States","institution_ids":["https://openalex.org/I162714631"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071178113","display_name":"Trevor Cohen","orcid":"https://orcid.org/0000-0003-0159-6697"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Trevor Cohen","raw_affiliation_strings":["Department of Biomedical Informatics and Medical Education, University of Washington , Seattle, WA 98109, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics and Medical Education, University of Washington , Seattle, WA 98109, United States","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002548520","display_name":"Meliha Yeti\u015fgen","orcid":"https://orcid.org/0000-0001-9919-9811"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meliha Yetisgen","raw_affiliation_strings":["Department of Biomedical Informatics and Medical Education, University of Washington , Seattle, WA 98109, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics and Medical Education, University of Washington , Seattle, WA 98109, United States","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101585391","display_name":"Hongfang Liu","orcid":"https://orcid.org/0000-0003-2570-3741"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongfang Liu","raw_affiliation_strings":["Department of Health Data Science and Artificial Intelligence, The University of Texas Health Science Center at Houston , Houston, TX 77030, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Data Science and Artificial Intelligence, The University of Texas Health Science Center at Houston , Houston, TX 77030, United States","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062245417","display_name":"St\u00e9phane M. Meystre","orcid":"https://orcid.org/0000-0002-7632-9625"},"institutions":[{"id":"https://openalex.org/I15196421","display_name":"University of Applied Sciences and Arts of Southern Switzerland","ror":"https://ror.org/05ep8g269","country_code":"CH","type":"education","lineage":["https://openalex.org/I15196421"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"St\u00e9phane Meystre","raw_affiliation_strings":["Dipartimento tecnologie innovative, Institute of Digital Technologies for Personalised Healthcare, University of Applied Sciences and Arts of Southern Switzerland , Lugano, 6962, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-7632-9625","affiliations":[{"raw_affiliation_string":"Dipartimento tecnologie innovative, Institute of Digital Technologies for Personalised Healthcare, University of Applied Sciences and Arts of Southern Switzerland , Lugano, 6962, Switzerland","institution_ids":["https://openalex.org/I15196421"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080116611","display_name":"Yanshan Wang","orcid":"https://orcid.org/0000-0003-4433-7839"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yanshan Wang","raw_affiliation_strings":["Department of Biomedical Informatics, University of Pittsburgh , Pittsburgh, PA 15206, United States","Department of Health Information Management, University of Pittsburgh , Pittsburgh, PA 15260, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh , Pittsburgh, PA 15206, United States","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Department of Health Information Management, University of Pittsburgh , Pittsburgh, PA 15260, United States","institution_ids":["https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5050196876"],"corresponding_institution_ids":["https://openalex.org/I58956616"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":4.9917,"has_fulltext":true,"cited_by_count":53,"citation_normalized_percentile":{"value":0.95787476,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"31","issue":"9","first_page":"2114","last_page":"2124"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.5540000200271606,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.5540000200271606,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.2775999903678894,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.04129999876022339,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.8776457905769348},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5868664979934692},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4870298504829407},{"id":"https://openalex.org/keywords/best-practice","display_name":"Best practice","score":0.4141278862953186},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.15812593698501587},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.06818199157714844}],"concepts":[{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.8776457905769348},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5868664979934692},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4870298504829407},{"id":"https://openalex.org/C184356942","wikidata":"https://www.wikidata.org/wiki/Q830382","display_name":"Best practice","level":2,"score":0.4141278862953186},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.15812593698501587},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.06818199157714844},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/jamia/ocae074","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocae074","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:38657567","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38657567","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11339493","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11339493","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11339493/pdf/ocae074.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},{"id":"pmh:oai:digitalcommons.library.tmc.edu:uthshis_docs-1656","is_oa":false,"landing_page_url":"https://digitalcommons.library.tmc.edu/uthshis_docs/667","pdf_url":null,"source":{"id":"https://openalex.org/S4306401994","display_name":"DigtalCommons @ Texas Medical Center Library (Texas Medical Center)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I867280407","host_organization_name":"The University of Texas Southwestern Medical Center","host_organization_lineage":["https://openalex.org/I867280407"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty, Staff and Student Publications","raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:11339493","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11339493","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11339493/pdf/ocae074.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},"sustainable_development_goals":[{"score":0.6100000143051147,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G1098541742","display_name":null,"funder_award_id":"U24EB029005","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2189905605","display_name":null,"funder_award_id":"U24TR004111","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2269549258","display_name":null,"funder_award_id":"R01 LM014056","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G3227775520","display_name":null,"funder_award_id":"W81XWH2110859","funder_id":"https://openalex.org/F4320306078","funder_display_name":"U.S. Department of Defense"},{"id":"https://openalex.org/G3432219134","display_name":null,"funder_award_id":"R01DA053028","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3737194942","display_name":null,"funder_award_id":"R01LM014056","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3970548831","display_name":null,"funder_award_id":"R01 DA053028","funder_id":"https://openalex.org/F4320337347","funder_display_name":"National Institute on Drug Abuse"},{"id":"https://openalex.org/G4274978418","display_name":null,"funder_award_id":"R21LM013934","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4502218380","display_name":null,"funder_award_id":"UL1 TR002548","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G5514817603","display_name":null,"funder_award_id":"UM1 TR004528","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G6706914181","display_name":null,"funder_award_id":"R01LM014056-S1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7515012519","display_name":null,"funder_award_id":"UL1TR001857","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7816401740","display_name":null,"funder_award_id":"UL1 TR001863","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G8859862982","display_name":null,"funder_award_id":"R01LM014306","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306078","display_name":"U.S. Department of Defense","ror":"https://ror.org/0447fe631"},{"id":"https://openalex.org/F4320311479","display_name":"Dravet Syndrome Foundation","ror":"https://ror.org/018hh3649"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320333364","display_name":"Clinical and Translational Science Collaborative of Cleveland, School of Medicine, Case Western Reserve University","ror":null},{"id":"https://openalex.org/F4320337347","display_name":"National Institute on Drug Abuse","ror":"https://ror.org/00fq5cm18"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4395067526.pdf"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W2228826686","https://openalex.org/W2911489562","https://openalex.org/W2943552823","https://openalex.org/W2964223283","https://openalex.org/W2999905431","https://openalex.org/W3001434439","https://openalex.org/W3046375318","https://openalex.org/W3194676777","https://openalex.org/W3196696529","https://openalex.org/W4221143046","https://openalex.org/W4224308101","https://openalex.org/W4226278401","https://openalex.org/W4287391717","https://openalex.org/W4288089799","https://openalex.org/W4297834221","https://openalex.org/W4321392130","https://openalex.org/W4381930847","https://openalex.org/W4382246105","https://openalex.org/W4384071683","https://openalex.org/W4384561707","https://openalex.org/W4385620388","https://openalex.org/W4388725043","https://openalex.org/W6739585900","https://openalex.org/W6762392948","https://openalex.org/W6769627184","https://openalex.org/W6781031682","https://openalex.org/W6788811087","https://openalex.org/W6809646742","https://openalex.org/W6810081322","https://openalex.org/W6810738896"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2017899917","https://openalex.org/W2080571363","https://openalex.org/W2481322495","https://openalex.org/W2002383399","https://openalex.org/W2898682754","https://openalex.org/W2889841093","https://openalex.org/W2151082141"],"abstract_inverted_index":{"OBJECTIVES:":[0],"Generative":[1],"large":[2,32],"language":[3,42,176,179,183],"models":[4],"(LLMs)":[5],"are":[6],"a":[7,19,37,47,65,111],"subset":[8],"of":[9,21,25,40,68,99,113,171,233,242,248],"transformers-based":[10],"neural":[11],"network":[12],"architecture":[13],"models.":[14],"LLMs":[15,59,100,135,200,253],"have":[16],"successfully":[17],"leveraged":[18,257],"combination":[20],"an":[22],"increased":[23],"number":[24],"parameters,":[26],"improvements":[27],"in":[28,64,101,190,214,237,252,263],"computational":[29],"efficiency,":[30],"and":[31,87,95,121,145,181,195,219,245],"pre-training":[33],"datasets":[34],"to":[35,60,93,137,204,223,230,258],"perform":[36],"wide":[38],"spectrum":[39],"natural":[41,175,178,182],"processing":[43],"(NLP)":[44],"tasks.":[45],"Using":[46],"few":[48],"examples":[49,53],"(few-shot)":[50],"or":[51],"no":[52],"(zero-shot)":[54],"for":[55,90,199],"prompt-tuning":[56],"has":[57],"enabled":[58],"achieve":[61],"state-of-the-art":[62],"performance":[63],"broad":[66,169],"range":[67],"NLP":[69,80,103,154,172,210,261],"applications.":[70,265],"This":[71,106],"article":[72],"by":[73],"the":[74,84,97,138,160,187,246],"American":[75],"Medical":[76],"Informatics":[77],"Association":[78],"(AMIA)":[79],"Working":[81],"Group":[82],"characterizes":[83],"opportunities,":[85],"challenges,":[86],"best":[88,162],"practices":[89],"our":[91],"community":[92],"leverage":[94],"advance":[96],"integration":[98],"downstream":[102],"applications":[104],"effectively.":[105],"can":[107,255],"be":[108,149,256],"accomplished":[109],"through":[110],"variety":[112],"approaches,":[114],"including":[115,143,212],"augmented":[116],"prompting,":[117,244],"instruction":[118,193],"prompt":[119,191],"tuning,":[120,192],"reinforcement":[122],"learning":[123],"from":[124,159],"human":[125],"feedback":[126],"(RLHF).":[127],"TARGET":[128],"AUDIENCE:":[129],"Our":[130],"focus":[131,166],"is":[132],"on":[133,167],"making":[134],"accessible":[136],"broader":[139],"biomedical":[140,209,264],"informatics":[141],"community,":[142],"clinicians":[144],"researchers":[146],"who":[147],"may":[148,156],"unfamiliar":[150],"with":[151],"NLP.":[152],"Additionally,":[153],"practitioners":[155],"gain":[157],"insight":[158],"described":[161],"practices.":[163],"SCOPE:":[164],"We":[165,185,225],"3":[168],"categories":[170],"tasks,":[173],"namely":[174],"understanding,":[177],"inferencing,":[180],"generation.":[184],"review":[186,227],"emerging":[188],"trends":[189],"fine-tuning,":[194],"evaluation":[196],"metrics":[197],"used":[198],"while":[201],"drawing":[202],"attention":[203],"several":[205],"issues":[206],"that":[207,254],"impact":[208],"applications,":[211],"falsehoods":[213],"generated":[215],"text":[216],"(confabulation/hallucinations),":[217],"toxicity,":[218],"dataset":[220],"contamination":[221],"leading":[222],"overfitting.":[224],"also":[226],"potential":[228],"approaches":[229],"address":[231,259],"some":[232],"these":[234],"current":[235],"challenges":[236],"LLMs,":[238],"such":[239],"as":[240],"chain":[241],"thought":[243],"phenomena":[247],"emergent":[249],"capabilities":[250],"observed":[251],"complex":[260],"challenge":[262]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":34},{"year":2024,"cited_by_count":12}],"updated_date":"2026-07-14T08:27:34.040176","created_date":"2025-10-10T00:00:00"}
