{"id":"https://openalex.org/W4393950419","doi":"https://doi.org/10.1093/jamia/ocae069","title":"Collaborative and privacy-enhancing workflows on a clinical data warehouse: an example developing natural language processing pipelines to detect medical conditions","display_name":"Collaborative and privacy-enhancing workflows on a clinical data warehouse: an example developing natural language processing pipelines to detect medical conditions","publication_year":2024,"publication_date":"2024-04-04","ids":{"openalex":"https://openalex.org/W4393950419","doi":"https://doi.org/10.1093/jamia/ocae069","pmid":"https://pubmed.ncbi.nlm.nih.gov/38573195"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocae069","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocae069","pdf_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocae069/57159967/ocae069.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocae069/57159967/ocae069.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5092843518","display_name":"Thomas Petit-Jean","orcid":"https://orcid.org/0000-0002-4433-442X"},"institutions":[{"id":"https://openalex.org/I4210097159","display_name":"Assistance Publique \u2013 H\u00f4pitaux de Paris","ror":"https://ror.org/00pg5jh14","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Thomas Petit-Jean","raw_affiliation_strings":["Innovation and Data Unit, IT Department, Assistance Publique-H\u00f4pitaux de Paris , Paris, 75012, France"],"raw_orcid":"https://orcid.org/0000-0002-4433-442X","affiliations":[{"raw_affiliation_string":"Innovation and Data Unit, IT Department, Assistance Publique-H\u00f4pitaux de Paris , Paris, 75012, France","institution_ids":["https://openalex.org/I4210097159"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051913367","display_name":"Christel G\u00e9rardin","orcid":null},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210097159","display_name":"Assistance Publique \u2013 H\u00f4pitaux de Paris","ror":"https://ror.org/00pg5jh14","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159"]},{"id":"https://openalex.org/I4210133907","display_name":"Institut Pierre Louis d\u2018\u00c9pid\u00e9miologie et de Sant\u00e9 Publique","ror":"https://ror.org/02qqh1125","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210133907"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christel G\u00e9rardin","raw_affiliation_strings":["Innovation and Data Unit, IT Department, Assistance Publique-H\u00f4pitaux de Paris , Paris, 75012, France","Institut Pierre-Louis d\u2019Epid\u00e9miologie et de Sant\u00e9 Publique, INSERM, Sorbonne Universit\u00e9 , Paris, 75012, France"],"raw_orcid":"https://orcid.org/0000-0002-9303-6349","affiliations":[{"raw_affiliation_string":"Innovation and Data Unit, IT Department, Assistance Publique-H\u00f4pitaux de Paris , Paris, 75012, France","institution_ids":["https://openalex.org/I4210097159"]},{"raw_affiliation_string":"Institut Pierre-Louis d\u2019Epid\u00e9miologie et de Sant\u00e9 Publique, INSERM, Sorbonne Universit\u00e9 , Paris, 75012, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210133907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051536922","display_name":"Emmanuelle Berthelot","orcid":"https://orcid.org/0000-0002-0418-3110"},"institutions":[{"id":"https://openalex.org/I4210097159","display_name":"Assistance Publique \u2013 H\u00f4pitaux de Paris","ror":"https://ror.org/00pg5jh14","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159"]},{"id":"https://openalex.org/I4210162942","display_name":"Bic\u00eatre Hospital","ror":"https://ror.org/05c9p1x46","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159","https://openalex.org/I4210162942","https://openalex.org/I4405259118"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Emmanuelle Berthelot","raw_affiliation_strings":["Department of Cardiology, H\u00f4pital Bic\u00eatre, Assistance Publique-H\u00f4pitaux de Paris , Le Kremlin Bic\u00eatre, 94270, France"],"raw_orcid":"https://orcid.org/0000-0002-0418-3110","affiliations":[{"raw_affiliation_string":"Department of Cardiology, H\u00f4pital Bic\u00eatre, Assistance Publique-H\u00f4pitaux de Paris , Le Kremlin Bic\u00eatre, 94270, France","institution_ids":["https://openalex.org/I4210162942","https://openalex.org/I4210097159"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070371776","display_name":"Gilles Ch\u00e2tellier","orcid":"https://orcid.org/0000-0002-6373-8956"},"institutions":[{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210097159","display_name":"Assistance Publique \u2013 H\u00f4pitaux de Paris","ror":"https://ror.org/00pg5jh14","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gilles Chatellier","raw_affiliation_strings":["Department of Medical Informatics, Assistance Publique-H\u00f4pitaux de Paris, Centre-Universit\u00e9 de Paris (APHP-CUP), Universit\u00e9 de Paris , Paris, 75015, France","Innovation and Data Unit, IT Department, Assistance Publique-H\u00f4pitaux de Paris , Paris, 75012, France"],"raw_orcid":"https://orcid.org/0000-0002-6373-8956","affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, Assistance Publique-H\u00f4pitaux de Paris, Centre-Universit\u00e9 de Paris (APHP-CUP), Universit\u00e9 de Paris , Paris, 75015, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I4210097159"]},{"raw_affiliation_string":"Innovation and Data Unit, IT Department, Assistance Publique-H\u00f4pitaux de Paris , Paris, 75012, France","institution_ids":["https://openalex.org/I4210097159"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024797186","display_name":"Marie Frank","orcid":"https://orcid.org/0000-0002-7929-6523"},"institutions":[{"id":"https://openalex.org/I4210097159","display_name":"Assistance Publique \u2013 H\u00f4pitaux de Paris","ror":"https://ror.org/00pg5jh14","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marie Frank","raw_affiliation_strings":["Department of Medical Informatics, H\u00f4pitaux Universitaires Paris-Saclay, Assistance Publique-H\u00f4pitaux de Paris , Le Kremlin-Bic\u00eatre, 94270, France"],"raw_orcid":"https://orcid.org/0000-0002-7929-6523","affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, H\u00f4pitaux Universitaires Paris-Saclay, Assistance Publique-H\u00f4pitaux de Paris , Le Kremlin-Bic\u00eatre, 94270, France","institution_ids":["https://openalex.org/I4210097159"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056834851","display_name":"Xavier Tannier","orcid":"https://orcid.org/0000-0002-2452-8868"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210091279","display_name":"Universit\u00e9 Sorbonne Paris Nord","ror":"https://ror.org/0199hds37","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210091279"]},{"id":"https://openalex.org/I4389425324","display_name":"Laboratoire d'Informatique M\u00e9dicale et d'Ing\u00e9nierie des Connaissances en e-Sant\u00e9","ror":"https://ror.org/01jr1v359","country_code":null,"type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210091279","https://openalex.org/I4389425324"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Xavier Tannier","raw_affiliation_strings":["Laboratoire d'Informatique M\u00e9dicale et d'Ing\u00e9nierie des Connaissances pour la e-Sant\u00e9 (LIMICS), INSERM, Universit\u00e9 Sorbonne Paris Nord, Sorbonne Universit\u00e9 , Paris, 75005, France"],"raw_orcid":"https://orcid.org/0000-0002-2452-8868","affiliations":[{"raw_affiliation_string":"Laboratoire d'Informatique M\u00e9dicale et d'Ing\u00e9nierie des Connaissances pour la e-Sant\u00e9 (LIMICS), INSERM, Universit\u00e9 Sorbonne Paris Nord, Sorbonne Universit\u00e9 , Paris, 75005, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4389425324","https://openalex.org/I4210091279"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077875475","display_name":"Emmanuelle Kempf","orcid":"https://orcid.org/0000-0002-9285-1966"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210091279","display_name":"Universit\u00e9 Sorbonne Paris Nord","ror":"https://ror.org/0199hds37","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210091279"]},{"id":"https://openalex.org/I4210097159","display_name":"Assistance Publique \u2013 H\u00f4pitaux de Paris","ror":"https://ror.org/00pg5jh14","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159"]},{"id":"https://openalex.org/I4210156254","display_name":"H\u00f4pital Albert-Chenevier","ror":"https://ror.org/0511th722","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159","https://openalex.org/I4210156254"]},{"id":"https://openalex.org/I4389425324","display_name":"Laboratoire d'Informatique M\u00e9dicale et d'Ing\u00e9nierie des Connaissances en e-Sant\u00e9","ror":"https://ror.org/01jr1v359","country_code":null,"type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210091279","https://openalex.org/I4389425324"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Emmanuelle Kempf","raw_affiliation_strings":["Department of Medical Oncology, Henri Mondor and Albert Chenevier Teaching Hospital, Assistance Publique-H\u00f4pitaux de Paris , Cr\u00e9teil, 94000, France","Laboratoire d'Informatique M\u00e9dicale et d'Ing\u00e9nierie des Connaissances pour la e-Sant\u00e9 (LIMICS), INSERM, Universit\u00e9 Sorbonne Paris Nord, Sorbonne Universit\u00e9 , Paris, 75005, France"],"raw_orcid":"https://orcid.org/0000-0002-9285-1966","affiliations":[{"raw_affiliation_string":"Department of Medical Oncology, Henri Mondor and Albert Chenevier Teaching Hospital, Assistance Publique-H\u00f4pitaux de Paris , Cr\u00e9teil, 94000, France","institution_ids":["https://openalex.org/I4210156254","https://openalex.org/I4210097159"]},{"raw_affiliation_string":"Laboratoire d'Informatique M\u00e9dicale et d'Ing\u00e9nierie des Connaissances pour la e-Sant\u00e9 (LIMICS), INSERM, Universit\u00e9 Sorbonne Paris Nord, Sorbonne Universit\u00e9 , Paris, 75005, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4389425324","https://openalex.org/I4210091279"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059890101","display_name":"Romain Bey","orcid":null},"institutions":[{"id":"https://openalex.org/I4210097159","display_name":"Assistance Publique \u2013 H\u00f4pitaux de Paris","ror":"https://ror.org/00pg5jh14","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Romain Bey","raw_affiliation_strings":["Innovation and Data Unit, IT Department, Assistance Publique-H\u00f4pitaux de Paris , Paris, 75012, France"],"raw_orcid":"https://orcid.org/0000-0002-6413-5188","affiliations":[{"raw_affiliation_string":"Innovation and Data Unit, IT Department, Assistance Publique-H\u00f4pitaux de Paris , Paris, 75012, France","institution_ids":["https://openalex.org/I4210097159"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5092843518"],"corresponding_institution_ids":["https://openalex.org/I4210097159"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":{"value":3967,"currency":"USD","value_usd":3967},"fwci":7.2364,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.97440988,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"31","issue":"6","first_page":"1280","last_page":"1290"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.25279998779296875,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.25279998779296875,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.16820000112056732,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10764","display_name":"Privacy-Preserving Technologies in Data","score":0.16509999334812164,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.868256688117981},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.746954083442688},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6532545685768127},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6506578326225281},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5482542514801025},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5413167476654053},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3794187903404236},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3518552780151367},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3487560451030731},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33575868606567383}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.868256688117981},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.746954083442688},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6532545685768127},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6506578326225281},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5482542514801025},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5413167476654053},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3794187903404236},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3518552780151367},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3487560451030731},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33575868606567383},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000073458","descriptor_name":"Data Warehousing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073458","descriptor_name":"Data Warehousing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073458","descriptor_name":"Data Warehousing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073458","descriptor_name":"Data Warehousing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005602","descriptor_name":"France","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005602","descriptor_name":"France","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005602","descriptor_name":"France","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005602","descriptor_name":"France","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/jamia/ocae069","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocae069","pdf_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocae069/57159967/ocae069.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:38573195","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38573195","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11105139","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11105139","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11105139/pdf/ocae069.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/jamia/ocae069","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocae069","pdf_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocae069/57159967/ocae069.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4393950419.pdf"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W17929806","https://openalex.org/W1968592812","https://openalex.org/W2000445173","https://openalex.org/W2050091824","https://openalex.org/W2104608657","https://openalex.org/W2129168200","https://openalex.org/W2163278718","https://openalex.org/W2165037395","https://openalex.org/W2197450709","https://openalex.org/W2283041611","https://openalex.org/W2555887493","https://openalex.org/W2768488789","https://openalex.org/W2786917553","https://openalex.org/W2805211535","https://openalex.org/W2884694996","https://openalex.org/W2905179958","https://openalex.org/W2908201961","https://openalex.org/W2911489562","https://openalex.org/W2963693643","https://openalex.org/W2966351171","https://openalex.org/W3000795845","https://openalex.org/W3001340766","https://openalex.org/W3012501605","https://openalex.org/W3086590218","https://openalex.org/W3102251128","https://openalex.org/W3123984549","https://openalex.org/W3127166591","https://openalex.org/W3136030998","https://openalex.org/W3138927052","https://openalex.org/W3158665049","https://openalex.org/W3192937691","https://openalex.org/W3194989301","https://openalex.org/W4205228770","https://openalex.org/W4365143687","https://openalex.org/W4392757531"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W4255934811","https://openalex.org/W2465382974","https://openalex.org/W2010229520","https://openalex.org/W2547528905"],"abstract_inverted_index":{"OBJECTIVE:":[0],"To":[1],"develop":[2],"and":[3,30,43,52,84,114,129,141,183,189,201],"validate":[4,188],"a":[5,28,58,163,170,176],"natural":[6],"language":[7,60],"processing":[8],"(NLP)":[9],"pipeline":[10,38,121,204],"that":[11,169,205],"detects":[12,206],"18":[13],"conditions":[14,207],"in":[15,73,209],"French":[16],"clinical":[17,66,71,178,210],"notes,":[18],"including":[19],"16":[20],"comorbidities":[21],"of":[22,65,76,101,110,115,131,172],"the":[23,74,98,102,107,111,116],"Charlson":[24],"index,":[25],"while":[26,96],"exploring":[27],"collaborative":[29,117],"privacy-enhancing":[31],"workflow.":[32],"MATERIALS":[33],"AND":[34],"METHODS:":[35],"The":[36,86,120,158],"detection":[37],"relied":[39],"both":[40],"on":[41,63,175],"rule-based":[42],"machine":[44],"learning":[45],"algorithms,":[46],"respectively,":[47],"for":[48],"named":[49],"entity":[50,53],"recognition":[51],"qualification,":[54],"respectively.":[55,145],"We":[56,105,167],"used":[57],"large":[59],"model":[61],"pre-trained":[62],"millions":[64],"notes":[67,72],"along":[68],"with":[69],"annotated":[70],"context":[75],"3":[77],"cohort":[78],"studies":[79,95],"related":[80],"to":[81,91,149,186],"oncology,":[82],"cardiology,":[83],"rheumatology.":[85],"overall":[87],"workflow":[88],"was":[89],"conceived":[90],"foster":[92],"collaboration":[93],"between":[94],"respecting":[97],"privacy":[99],"constraints":[100],"data":[103,179],"warehouse.":[104],"estimated":[106],"added":[108],"values":[109],"advanced":[112],"technologies":[113,154],"setting.":[118],"RESULTS:":[119],"reached":[122],"macro-averaged":[123],"F1-score":[124],"positive":[125],"predictive":[126],"value,":[127],"sensitivity,":[128],"specificity":[130],"95.7":[132],"(95%CI":[133,136,139,143],"94.5-96.3),":[134],"95.4":[135],"94.0-96.3),":[137],"96.0":[138],"94.0-96.7),":[140],"99.2":[142],"99.0-99.4),":[144],"F1-scores":[146],"were":[147,160],"superior":[148],"those":[150],"observed":[151],"using":[152],"alternative":[153],"or":[155],"non-collaborative":[156],"settings.":[157],"models":[159],"shared":[161],"through":[162],"secured":[164],"registry.":[165],"CONCLUSIONS:":[166],"demonstrated":[168],"community":[171],"investigators":[173],"working":[174],"common":[177],"warehouse":[180],"could":[181],"efficiently":[182],"securely":[184],"collaborate":[185],"develop,":[187],"use":[190],"sensitive":[191],"artificial":[192],"intelligence":[193],"models.":[194],"In":[195],"particular,":[196],"we":[197],"provided":[198],"an":[199],"efficient":[200],"robust":[202],"NLP":[203],"mentioned":[208],"notes.":[211]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":1}],"updated_date":"2026-05-03T08:25:01.440150","created_date":"2025-10-10T00:00:00"}
