{"id":"https://openalex.org/W4387116288","doi":"https://doi.org/10.1093/jamia/ocad186","title":"Clustering rare diseases within an ontology-enriched knowledge graph","display_name":"Clustering rare diseases within an ontology-enriched knowledge graph","publication_year":2023,"publication_date":"2023-09-27","ids":{"openalex":"https://openalex.org/W4387116288","doi":"https://doi.org/10.1093/jamia/ocad186","pmid":"https://pubmed.ncbi.nlm.nih.gov/37759342"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocad186","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocad186","pdf_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocad186/51783404/ocad186.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocad186/51783404/ocad186.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069257993","display_name":"Jaleal Sanjak","orcid":"https://orcid.org/0000-0002-3218-5500"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I1322124587","display_name":"Booz Allen Hamilton (United States)","ror":"https://ror.org/051rcp357","country_code":"US","type":"company","lineage":["https://openalex.org/I1322124587"]},{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jaleal Sanjak","raw_affiliation_strings":["Chief Technology Office, Booz Allen Hamilton , Bethesda, MD, United States","Division of Pre-Clinical Innovation, National Center for Advancing Translational Sciences (NCATS), National Institutes of Health (NIH) , Rockville, MD, United States"],"raw_orcid":"https://orcid.org/0000-0002-3218-5500","affiliations":[{"raw_affiliation_string":"Chief Technology Office, Booz Allen Hamilton , Bethesda, MD, United States","institution_ids":["https://openalex.org/I1322124587"]},{"raw_affiliation_string":"Division of Pre-Clinical Innovation, National Center for Advancing Translational Sciences (NCATS), National Institutes of Health (NIH) , Rockville, MD, United States","institution_ids":["https://openalex.org/I4210148682","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012672936","display_name":"Jessica Binder","orcid":"https://orcid.org/0000-0003-2091-3950"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jessica Binder","raw_affiliation_strings":["Division of Pre-Clinical Innovation, National Center for Advancing Translational Sciences (NCATS), National Institutes of Health (NIH) , Rockville, MD, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Pre-Clinical Innovation, National Center for Advancing Translational Sciences (NCATS), National Institutes of Health (NIH) , Rockville, MD, United States","institution_ids":["https://openalex.org/I4210148682","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045788094","display_name":"Arjun Singh Yadaw","orcid":"https://orcid.org/0000-0001-6853-7443"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arjun Singh Yadaw","raw_affiliation_strings":["Division of Pre-Clinical Innovation, National Center for Advancing Translational Sciences (NCATS), National Institutes of Health (NIH) , Rockville, MD, United States"],"raw_orcid":"https://orcid.org/0000-0001-6853-7443","affiliations":[{"raw_affiliation_string":"Division of Pre-Clinical Innovation, National Center for Advancing Translational Sciences (NCATS), National Institutes of Health (NIH) , Rockville, MD, United States","institution_ids":["https://openalex.org/I4210148682","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073074181","display_name":"Qian Zhu","orcid":"https://orcid.org/0000-0002-4858-6333"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qian Zhu","raw_affiliation_strings":["Division of Pre-Clinical Innovation, National Center for Advancing Translational Sciences (NCATS), National Institutes of Health (NIH) , Rockville, MD, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Pre-Clinical Innovation, National Center for Advancing Translational Sciences (NCATS), National Institutes of Health (NIH) , Rockville, MD, United States","institution_ids":["https://openalex.org/I4210148682","https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051353435","display_name":"Ewy A. Math\u00e9","orcid":"https://orcid.org/0000-0003-4491-8107"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ewy A Math\u00e9","raw_affiliation_strings":["Division of Pre-Clinical Innovation, National Center for Advancing Translational Sciences (NCATS), National Institutes of Health (NIH) , Rockville, MD, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Pre-Clinical Innovation, National Center for Advancing Translational Sciences (NCATS), National Institutes of Health (NIH) , Rockville, MD, United States","institution_ids":["https://openalex.org/I4210148682","https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5051353435"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210148682"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":{"value":3967,"currency":"USD","value_usd":3967},"fwci":2.8842,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.91185155,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"31","issue":"1","first_page":"154","last_page":"164"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6507999897003174,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6507999897003174,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.263700008392334,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.03460000082850456,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6691511869430542},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.623852550983429},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5176694393157959},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.5128955841064453},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5122898817062378},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.4411352276802063},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42497682571411133},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33179771900177},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.26145023107528687},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2091623842716217},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.12757915258407593},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.10782015323638916}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6691511869430542},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.623852550983429},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5176694393157959},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.5128955841064453},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5122898817062378},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.4411352276802063},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42497682571411133},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33179771900177},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.26145023107528687},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2091623842716217},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.12757915258407593},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.10782015323638916},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/jamia/ocad186","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocad186","pdf_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocad186/51783404/ocad186.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:37759342","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37759342","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10746319","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10746319","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10746319/pdf/ocad186.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/jamia/ocad186","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocad186","pdf_url":"https://academic.oup.com/jamia/advance-article-pdf/doi/10.1093/jamia/ocad186/51783404/ocad186.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4369667380","display_name":null,"funder_award_id":"ZIC TR000410-03","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6036610989","display_name":null,"funder_award_id":"ZIC TR000410-03","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4387116288.pdf"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W55962619","https://openalex.org/W1980885411","https://openalex.org/W1988919269","https://openalex.org/W1999825570","https://openalex.org/W2003540331","https://openalex.org/W2071694451","https://openalex.org/W2101234009","https://openalex.org/W2103017472","https://openalex.org/W2129370330","https://openalex.org/W2144806169","https://openalex.org/W2285410645","https://openalex.org/W2765673425","https://openalex.org/W2949311246","https://openalex.org/W2962756421","https://openalex.org/W2962969117","https://openalex.org/W2973267506","https://openalex.org/W2973459418","https://openalex.org/W2981350712","https://openalex.org/W2988630324","https://openalex.org/W3044334750","https://openalex.org/W3090220574","https://openalex.org/W3091928167","https://openalex.org/W3092998757","https://openalex.org/W3094762523","https://openalex.org/W3103412787","https://openalex.org/W3106811464","https://openalex.org/W3107527779","https://openalex.org/W3112600195","https://openalex.org/W3120233891","https://openalex.org/W3145969289","https://openalex.org/W3170771812","https://openalex.org/W3205669862","https://openalex.org/W3207457998","https://openalex.org/W4200505605","https://openalex.org/W4288433418","https://openalex.org/W4310240482","https://openalex.org/W6675354045","https://openalex.org/W6768806997","https://openalex.org/W6775365122","https://openalex.org/W6787364303","https://openalex.org/W6920663854"],"related_works":["https://openalex.org/W4281673370","https://openalex.org/W4206422705","https://openalex.org/W2886266969","https://openalex.org/W4366527864","https://openalex.org/W4287114073","https://openalex.org/W2903687253","https://openalex.org/W2006667691","https://openalex.org/W2111662069","https://openalex.org/W3174741986","https://openalex.org/W4223550566"],"abstract_inverted_index":{"OBJECTIVE:":[0],"Identifying":[1],"sets":[2],"of":[3,9,29,115,141],"rare":[4,30,38,60,203,222],"diseases":[5,39,166,173,204,223],"with":[6,64,111,231],"shared":[7],"aspects":[8],"etiology":[10],"and":[11,51,70,76,91,101,174,188],"pathophysiology":[12],"may":[13],"enable":[14],"drug":[15],"repurposing.":[16],"Toward":[17],"that":[18,145,157,214],"aim,":[19],"we":[20],"utilized":[21],"an":[22,161,211],"integrative":[23],"knowledge":[24,84],"graph":[25,85,206],"to":[26,81,243],"construct":[27],"clusters":[28,97,108,121,136,150,187],"diseases.":[31,117],"MATERIALS":[32],"AND":[33],"METHODS:":[34],"Data":[35],"on":[36,127,221],"3242":[37],"were":[40,89,109,137],"extracted":[41],"from":[42],"the":[43,95,120,128,135,146,182],"National":[44],"Center":[45],"for":[46,139,164,192,201,236],"Advancing":[47],"Translational":[48],"Science":[49],"Genetic":[50],"Rare":[52,130],"Diseases":[53],"Information":[54],"center":[55],"internal":[56],"data":[57,62,220,238],"resources.":[58],"The":[59,225],"disease":[61,96,107,186],"enriched":[63,147,176],"additional":[65],"biomedical":[66],"data,":[67,75,80],"including":[68],"gene":[69],"phenotype":[71],"ontologies,":[72],"biological":[73],"pathway":[74],"small":[77],"molecule-target":[78],"activity":[79],"create":[82],"a":[83,112,168,199],"(KG).":[86],"Node":[87],"embeddings":[88,159,226],"trained":[90],"clustered.":[92],"We":[93,118,155,196,209],"validated":[94],"through":[98],"semantic":[99,124],"similarity":[100,125],"feature":[102],"enrichment":[103,140],"analysis.":[104],"RESULTS:":[105],"Thirty-seven":[106],"created":[110],"mean":[113],"size":[114],"87":[116],"validate":[119],"quantitatively":[122],"via":[123],"based":[126],"Orphanet":[129],"Disease":[131],"Ontology.":[132],"In":[133],"addition,":[134],"analyzed":[138],"associated":[142],"genes,":[143],"revealing":[144],"genes":[148,177],"within":[149,167,181],"are":[151,160,190],"highly":[152],"related.":[153],"DISCUSSION:":[154],"demonstrate":[156],"node":[158,207],"effective":[162],"method":[163,200],"clustering":[165,202],"heterogenous":[169],"KG.":[170],"Semantically":[171],"similar":[172],"relevant":[175],"have":[178],"been":[179],"uncovered":[180],"clusters.":[183],"Connections":[184],"between":[185],"drugs":[189],"enumerated":[191],"follow-up":[193],"efforts.":[194],"CONCLUSION:":[195],"lay":[197],"out":[198],"using":[205],"embeddings.":[208],"develop":[210],"easy-to-maintain":[212],"pipeline":[213],"can":[215,228],"be":[216,229],"updated":[217],"when":[218],"new":[219],"emerges.":[224],"themselves":[227],"paired":[230],"other":[232,237,245],"representation":[233],"learning":[234],"methods":[235],"types,":[239],"such":[240],"as":[241],"drugs,":[242],"address":[244],"predictive":[246],"modeling":[247],"problems.":[248]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":3}],"updated_date":"2026-05-31T08:46:17.908082","created_date":"2025-10-10T00:00:00"}
