{"id":"https://openalex.org/W4362456756","doi":"https://doi.org/10.1093/jamia/ocad046","title":"Extracting social determinants of health events with transformer-based multitask, multilabel named entity recognition","display_name":"Extracting social determinants of health events with transformer-based multitask, multilabel named entity recognition","publication_year":2023,"publication_date":"2023-03-21","ids":{"openalex":"https://openalex.org/W4362456756","doi":"https://doi.org/10.1093/jamia/ocad046","pmid":"https://pubmed.ncbi.nlm.nih.gov/37002953"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocad046","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocad046","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10354761/pdf/ocad046.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020637789","display_name":"Russell Richie","orcid":"https://orcid.org/0000-0002-9686-8407"},"institutions":[{"id":"https://openalex.org/I1335321130","display_name":"Children's Hospital of Philadelphia","ror":"https://ror.org/01z7r7q48","country_code":"US","type":"funder","lineage":["https://openalex.org/I1335321130"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Russell Richie","raw_affiliation_strings":["MindCORE and Cognitive Science, University of Pennsylvania , Philadelphia, Pennsylvania, USA","Tsui Laboratory, Department of Biomedical and Health Informatics, Children\u2019s Hospital of Philadelphia , Philadelphia, Pennsylvania, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MindCORE and Cognitive Science, University of Pennsylvania , Philadelphia, Pennsylvania, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Tsui Laboratory, Department of Biomedical and Health Informatics, Children\u2019s Hospital of Philadelphia , Philadelphia, Pennsylvania, USA","institution_ids":["https://openalex.org/I1335321130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051373766","display_name":"V\u0131\u0301ctor Ruiz","orcid":"https://orcid.org/0000-0003-0440-2093"},"institutions":[{"id":"https://openalex.org/I1335321130","display_name":"Children's Hospital of Philadelphia","ror":"https://ror.org/01z7r7q48","country_code":"US","type":"funder","lineage":["https://openalex.org/I1335321130"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Victor M Ruiz","raw_affiliation_strings":["Tsui Laboratory, Department of Biomedical and Health Informatics, Children\u2019s Hospital of Philadelphia , Philadelphia, Pennsylvania, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tsui Laboratory, Department of Biomedical and Health Informatics, Children\u2019s Hospital of Philadelphia , Philadelphia, Pennsylvania, USA","institution_ids":["https://openalex.org/I1335321130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057039341","display_name":"Sifei Han","orcid":"https://orcid.org/0000-0002-3281-5955"},"institutions":[{"id":"https://openalex.org/I1335321130","display_name":"Children's Hospital of Philadelphia","ror":"https://ror.org/01z7r7q48","country_code":"US","type":"funder","lineage":["https://openalex.org/I1335321130"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sifei Han","raw_affiliation_strings":["Tsui Laboratory, Department of Biomedical and Health Informatics, Children\u2019s Hospital of Philadelphia , Philadelphia, Pennsylvania, USA"],"raw_orcid":"https://orcid.org/0000-0002-3281-5955","affiliations":[{"raw_affiliation_string":"Tsui Laboratory, Department of Biomedical and Health Informatics, Children\u2019s Hospital of Philadelphia , Philadelphia, Pennsylvania, USA","institution_ids":["https://openalex.org/I1335321130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101419376","display_name":"Lingyun Shi","orcid":"https://orcid.org/0000-0003-1925-8901"},"institutions":[{"id":"https://openalex.org/I1335321130","display_name":"Children's Hospital of Philadelphia","ror":"https://ror.org/01z7r7q48","country_code":"US","type":"funder","lineage":["https://openalex.org/I1335321130"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lingyun Shi","raw_affiliation_strings":["Tsui Laboratory, Department of Biomedical and Health Informatics, Children\u2019s Hospital of Philadelphia , Philadelphia, Pennsylvania, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tsui Laboratory, Department of Biomedical and Health Informatics, Children\u2019s Hospital of Philadelphia , Philadelphia, Pennsylvania, USA","institution_ids":["https://openalex.org/I1335321130"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011685742","display_name":"Fuchiang Tsui","orcid":"https://orcid.org/0000-0002-6383-8471"},"institutions":[{"id":"https://openalex.org/I1335321130","display_name":"Children's Hospital of Philadelphia","ror":"https://ror.org/01z7r7q48","country_code":"US","type":"funder","lineage":["https://openalex.org/I1335321130"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Fuchiang (Rich) Tsui","raw_affiliation_strings":["Department of Anesthesiology and Critical Care, University of Pennsylvania Perelman School of Medicine , Philadelphia, Pennsylvania, USA","Tsui Laboratory, Department of Biomedical and Health Informatics, Children\u2019s Hospital of Philadelphia , Philadelphia, Pennsylvania, USA","Department of Anesthesiology and Critical Care, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA"],"raw_orcid":"https://orcid.org/0000-0002-6383-8471","affiliations":[{"raw_affiliation_string":"Department of Anesthesiology and Critical Care, University of Pennsylvania Perelman School of Medicine , Philadelphia, Pennsylvania, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Tsui Laboratory, Department of Biomedical and Health Informatics, Children\u2019s Hospital of Philadelphia , Philadelphia, Pennsylvania, USA","institution_ids":["https://openalex.org/I1335321130"]},{"raw_affiliation_string":"Department of Anesthesiology and Critical Care, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA","institution_ids":["https://openalex.org/I79576946"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5011685742"],"corresponding_institution_ids":["https://openalex.org/I1335321130","https://openalex.org/I79576946"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":8.9221,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.9808573,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"30","issue":"8","first_page":"1379","last_page":"1388"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11610","display_name":"Food Security and Health in Diverse Populations","score":0.32519999146461487,"subfield":{"id":"https://openalex.org/subfields/3600","display_name":"General Health Professions"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11610","display_name":"Food Security and Health in Diverse Populations","score":0.32519999146461487,"subfield":{"id":"https://openalex.org/subfields/3600","display_name":"General Health Professions"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12488","display_name":"Mental Health via Writing","score":0.2687999904155731,"subfield":{"id":"https://openalex.org/subfields/3207","display_name":"Social Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.09830000251531601,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6108502745628357},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.530546247959137},{"id":"https://openalex.org/keywords/recall","display_name":"Recall","score":0.4797136187553406},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.4573461711406708},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4494292140007019},{"id":"https://openalex.org/keywords/f1-score","display_name":"F1 score","score":0.44373202323913574},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.42085063457489014},{"id":"https://openalex.org/keywords/social-determinants-of-health","display_name":"Social determinants of health","score":0.41386160254478455},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.40142425894737244},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.30044564604759216},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.269348680973053},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.23122698068618774},{"id":"https://openalex.org/keywords/cognitive-psychology","display_name":"Cognitive psychology","score":0.1597793996334076},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11871343851089478}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6108502745628357},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.530546247959137},{"id":"https://openalex.org/C100660578","wikidata":"https://www.wikidata.org/wiki/Q18733","display_name":"Recall","level":2,"score":0.4797136187553406},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.4573461711406708},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4494292140007019},{"id":"https://openalex.org/C148524875","wikidata":"https://www.wikidata.org/wiki/Q6975395","display_name":"F1 score","level":2,"score":0.44373202323913574},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.42085063457489014},{"id":"https://openalex.org/C78491826","wikidata":"https://www.wikidata.org/wiki/Q3045352","display_name":"Social determinants of health","level":3,"score":0.41386160254478455},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.40142425894737244},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.30044564604759216},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.269348680973053},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.23122698068618774},{"id":"https://openalex.org/C180747234","wikidata":"https://www.wikidata.org/wiki/Q23373","display_name":"Cognitive psychology","level":1,"score":0.1597793996334076},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11871343851089478},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000431","descriptor_name":"Ethanol","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000431","descriptor_name":"Ethanol","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000431","descriptor_name":"Ethanol","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000431","descriptor_name":"Ethanol","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000431","descriptor_name":"Ethanol","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011788","descriptor_name":"Quality of Life","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011788","descriptor_name":"Quality of Life","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011788","descriptor_name":"Quality of Life","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011788","descriptor_name":"Quality of Life","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011788","descriptor_name":"Quality of Life","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033262","descriptor_name":"Narration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033262","descriptor_name":"Narration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033262","descriptor_name":"Narration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033262","descriptor_name":"Narration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033262","descriptor_name":"Narration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064890","descriptor_name":"Social Determinants of Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064890","descriptor_name":"Social Determinants of Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064890","descriptor_name":"Social Determinants of Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064890","descriptor_name":"Social Determinants of Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064890","descriptor_name":"Social Determinants of Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/jamia/ocad046","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocad046","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:37002953","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37002953","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10354761","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10354761","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10354761/pdf/ocad046.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:10354761","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10354761","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10354761/pdf/ocad046.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},"sustainable_development_goals":[{"score":0.5600000023841858,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G3792592568","display_name":null,"funder_award_id":"R21 MH130853","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G491406084","display_name":null,"funder_award_id":"R21MH130853-01","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"}],"funders":[{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4362456756.pdf"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1987666335","https://openalex.org/W2159160564","https://openalex.org/W2334663002","https://openalex.org/W2396881363","https://openalex.org/W2596821164","https://openalex.org/W2766690634","https://openalex.org/W2883350963","https://openalex.org/W2895702772","https://openalex.org/W2896457183","https://openalex.org/W2915963147","https://openalex.org/W2925863688","https://openalex.org/W2940494117","https://openalex.org/W2952437275","https://openalex.org/W2965373594","https://openalex.org/W2980282514","https://openalex.org/W3009978733","https://openalex.org/W3015667612","https://openalex.org/W3019725509","https://openalex.org/W3128717124","https://openalex.org/W3173198002","https://openalex.org/W3197002583","https://openalex.org/W3202375701","https://openalex.org/W4206221224","https://openalex.org/W4221111264","https://openalex.org/W4221143384","https://openalex.org/W4252465085","https://openalex.org/W4287100530","https://openalex.org/W4307091486","https://openalex.org/W4321002059","https://openalex.org/W4366551380","https://openalex.org/W6810024593","https://openalex.org/W6949549905"],"related_works":["https://openalex.org/W2358294942","https://openalex.org/W4367460280","https://openalex.org/W4387490204","https://openalex.org/W4386414453","https://openalex.org/W4287854475","https://openalex.org/W3186737058","https://openalex.org/W4388937883","https://openalex.org/W4389848424","https://openalex.org/W4293205612","https://openalex.org/W4352976590"],"abstract_inverted_index":{"OBJECTIVE:":[0],"Social":[1],"determinants":[2],"of":[3,16,55,79,163],"health":[4,13,38,250],"(SDOH)":[5],"are":[6,27],"nonclinical,":[7],"socioeconomic":[8],"conditions":[9],"that":[10,122,235],"influence":[11],"patient":[12],"and":[14,91,101,165,171,177,191,201,207],"quality":[15],"life.":[17],"Identifying":[18],"SDOH":[19,26,51,70,77,86,92,119,222,244],"may":[20,246],"help":[21,247],"clinicians":[22,248],"target":[23],"interventions.":[24],"However,":[25],"more":[28],"frequently":[29],"available":[30],"in":[31,68,151,204],"narrative":[32],"notes":[33,48],"compared":[34,239],"to":[35,52,74,117,142,240],"structured":[36],"electronic":[37],"records.":[39],"The":[40],"2022":[41],"n2c2":[42],"Track":[43],"2":[44],"competition":[45,206],"released":[46],"clinical":[47,225],"annotated":[49],"for":[50,58,148],"promote":[53],"development":[54],"NLP":[56,218],"systems":[57],"extracting":[59],"SDOH.":[60],"We":[61,99],"developed":[62,100],"a":[63,103,111,138,231],"system":[64,116,219],"addressing":[65],"3":[66,158],"limitations":[67],"state-of-the-art":[69,241],"extraction:":[71],"the":[72,80,182,205],"inability":[73],"identify":[75],"multiple":[76,94],"events":[78,149,223],"same":[81,183],"type":[82],"per":[83],"sentence,":[84],"overlapping":[85],"attributes":[87],"within":[88,209],"text":[89,124],"spans,":[90],"spanning":[93],"sentences.":[95],"MATERIALS":[96],"AND":[97],"METHODS:":[98],"evaluated":[102],"2-stage":[104],"architecture.":[105],"In":[106,133],"stage":[107,134,152],"1,":[108],"we":[109,136,185,197],"trained":[110,137,176],"BioClinical-BERT-based":[112],"named":[113],"entity":[114],"recognition":[115],"extract":[118,143],"event":[120],"triggers,":[121],"is,":[123],"spans":[125],"indicating":[126],"substance":[127],"use,":[128],"employment,":[129],"or":[130],"living":[131],"status.":[132],"2,":[135],"multitask,":[139],"multilabel":[140],"NER":[141],"arguments":[144],"(eg,":[145],"alcohol":[146],"\"type\")":[147],"extracted":[150,221],"1.":[153],"Evaluation":[154],"was":[155,228],"performed":[156],"across":[157],"subtasks":[159],"differing":[160],"by":[161],"provenance":[162],"training":[164],"validation":[166],"data":[167,180],"using":[168],"precision,":[169,188],"recall,":[170,190],"F1":[172,211],"scores.":[173],"RESULTS:":[174],"When":[175],"validated":[178],"on":[179],"from":[181,212,224],"site,":[184],"achieved":[186,229],"0.87":[187],"0.89":[189],"0.88":[192],"F1.":[193],"Across":[194],"all":[195],"subtasks,":[196],"ranked":[198],"between":[199],"second":[200],"fourth":[202],"place":[203],"always":[208],"0.02":[210],"first.":[213],"CONCLUSIONS:":[214],"Our":[215],"2-stage,":[216],"deep-learning-based":[217],"effectively":[220],"notes.":[226],"This":[227],"with":[230],"novel":[232],"classification":[233],"framework":[234],"leveraged":[236],"simpler":[237],"architectures":[238],"systems.":[242],"Improved":[243],"extraction":[245],"improve":[249],"outcomes.":[251]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
