{"id":"https://openalex.org/W4295077729","doi":"https://doi.org/10.1093/jamia/ocac149","title":"A survey of automated methods for biomedical text simplification","display_name":"A survey of automated methods for biomedical text simplification","publication_year":2022,"publication_date":"2022-09-09","ids":{"openalex":"https://openalex.org/W4295077729","doi":"https://doi.org/10.1093/jamia/ocac149","pmid":"https://pubmed.ncbi.nlm.nih.gov/36083212"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocac149","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocac149","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10161533/pdf/ocac149.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061839283","display_name":"Brian Ondov","orcid":"https://orcid.org/0000-0002-0740-1793"},"institutions":[{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Brian Ondov","raw_affiliation_strings":["Computational Health Research Branch, National Library of Medicine , Bethesda, Maryland, USA"],"raw_orcid":"https://orcid.org/0000-0002-0740-1793","affiliations":[{"raw_affiliation_string":"Computational Health Research Branch, National Library of Medicine , Bethesda, Maryland, USA","institution_ids":["https://openalex.org/I2800548410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015851915","display_name":"Kush Attal","orcid":"https://orcid.org/0000-0003-3635-9368"},"institutions":[{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kush Attal","raw_affiliation_strings":["Computational Health Research Branch, National Library of Medicine , Bethesda, Maryland, USA"],"raw_orcid":"https://orcid.org/0000-0003-3635-9368","affiliations":[{"raw_affiliation_string":"Computational Health Research Branch, National Library of Medicine , Bethesda, Maryland, USA","institution_ids":["https://openalex.org/I2800548410"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046764593","display_name":"Dina Demner\u2010Fushman","orcid":null},"institutions":[{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dina Demner-Fushman","raw_affiliation_strings":["Computational Health Research Branch, National Library of Medicine , Bethesda, Maryland, USA"],"raw_orcid":"https://orcid.org/0000-0002-4361-5799","affiliations":[{"raw_affiliation_string":"Computational Health Research Branch, National Library of Medicine , Bethesda, Maryland, USA","institution_ids":["https://openalex.org/I2800548410"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5061839283"],"corresponding_institution_ids":["https://openalex.org/I2800548410"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":3.674,"has_fulltext":true,"cited_by_count":35,"citation_normalized_percentile":{"value":0.9387904,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"29","issue":"11","first_page":"1976","last_page":"1988"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13629","display_name":"Text Readability and Simplification","score":0.9793000221252441,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13629","display_name":"Text Readability and Simplification","score":0.9793000221252441,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10737","display_name":"Health Literacy and Information Accessibility","score":0.003800000064074993,"subfield":{"id":"https://openalex.org/subfields/3600","display_name":"General Health Professions"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.0019000000320374966,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8012388944625854},{"id":"https://openalex.org/keywords/paragraph","display_name":"Paragraph","score":0.6700192093849182},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6094731092453003},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5663846731185913},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5616536736488342},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5370693802833557},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5118957757949829},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4855620563030243},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4728151559829712},{"id":"https://openalex.org/keywords/comprehension","display_name":"Comprehension","score":0.4688490629196167},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.44604435563087463},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4418957233428955},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.2845765948295593},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2537239193916321}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8012388944625854},{"id":"https://openalex.org/C2777206241","wikidata":"https://www.wikidata.org/wiki/Q194431","display_name":"Paragraph","level":2,"score":0.6700192093849182},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6094731092453003},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5663846731185913},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5616536736488342},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5370693802833557},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5118957757949829},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4855620563030243},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4728151559829712},{"id":"https://openalex.org/C511192102","wikidata":"https://www.wikidata.org/wiki/Q5156948","display_name":"Comprehension","level":2,"score":0.4688490629196167},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.44604435563087463},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4418957233428955},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.2845765948295593},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2537239193916321},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/jamia/ocac149","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocac149","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:36083212","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36083212","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10161533","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10161533","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10161533/pdf/ocac149.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:10161533","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10161533","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10161533/pdf/ocac149.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4295077729.pdf"},"referenced_works_count":71,"referenced_works":["https://openalex.org/W109941524","https://openalex.org/W112847953","https://openalex.org/W138612281","https://openalex.org/W142085255","https://openalex.org/W185318260","https://openalex.org/W257074533","https://openalex.org/W274221391","https://openalex.org/W1007790680","https://openalex.org/W1481128830","https://openalex.org/W1841433433","https://openalex.org/W1964157370","https://openalex.org/W1967093386","https://openalex.org/W1967390364","https://openalex.org/W1994635001","https://openalex.org/W1995514968","https://openalex.org/W2016324775","https://openalex.org/W2016718155","https://openalex.org/W2029598902","https://openalex.org/W2032175749","https://openalex.org/W2032851430","https://openalex.org/W2045241688","https://openalex.org/W2048587526","https://openalex.org/W2057620292","https://openalex.org/W2060066439","https://openalex.org/W2070167510","https://openalex.org/W2081580037","https://openalex.org/W2093157872","https://openalex.org/W2097887334","https://openalex.org/W2112787834","https://openalex.org/W2122450633","https://openalex.org/W2130942839","https://openalex.org/W2133776815","https://openalex.org/W2159583324","https://openalex.org/W2159947192","https://openalex.org/W2183771419","https://openalex.org/W2270070752","https://openalex.org/W2338412185","https://openalex.org/W2401663944","https://openalex.org/W2402515582","https://openalex.org/W2534253848","https://openalex.org/W2601978497","https://openalex.org/W2626274496","https://openalex.org/W2755616156","https://openalex.org/W2776226510","https://openalex.org/W2786752302","https://openalex.org/W2796501168","https://openalex.org/W2808007702","https://openalex.org/W2891481746","https://openalex.org/W2945815076","https://openalex.org/W2949170474","https://openalex.org/W3009151219","https://openalex.org/W3028106429","https://openalex.org/W3048748367","https://openalex.org/W3048855352","https://openalex.org/W3097322372","https://openalex.org/W3099557900","https://openalex.org/W3117606449","https://openalex.org/W3164802810","https://openalex.org/W3166664235","https://openalex.org/W3194727116","https://openalex.org/W4205368421","https://openalex.org/W4229520555","https://openalex.org/W4242580526","https://openalex.org/W6605610795","https://openalex.org/W6641117911","https://openalex.org/W6648903088","https://openalex.org/W6679436768","https://openalex.org/W6680087991","https://openalex.org/W6686167255","https://openalex.org/W6785400074","https://openalex.org/W6795549286"],"related_works":["https://openalex.org/W2377059580","https://openalex.org/W127000293","https://openalex.org/W4200355488","https://openalex.org/W3215892509","https://openalex.org/W2928616779","https://openalex.org/W2412592434","https://openalex.org/W2010523086","https://openalex.org/W4244602709","https://openalex.org/W594987446","https://openalex.org/W2012131063"],"abstract_inverted_index":{"OBJECTIVE:":[0],"Plain":[1],"language":[2,71],"in":[3,47,121],"medicine":[4],"has":[5,25,201],"long":[6],"been":[7,31,213],"advocated":[8],"as":[9],"a":[10],"way":[11],"to":[12,140,203,215],"improve":[13],"patient":[14],"understanding":[15],"and":[16,56,61,84,89,105,114,167,183,221,224],"engagement.":[17],"As":[18],"the":[19,34,45,51,79,85,122,141,175],"field":[20],"of":[21,37,53,75,94,144,198,206,226],"Natural":[22],"Language":[23],"Processing":[24],"progressed,":[26],"increasingly":[27],"sophisticated":[28],"methods":[29,191],"have":[30,212],"explored":[32],"for":[33,41,77,91,194,244],"automatic":[35,142],"simplification":[36,143],"existing":[38,59],"biomedical":[39,145,248],"text":[40,249],"consumers.":[42],"We":[43,68,107,132],"survey":[44],"literature":[46,72],"this":[48,195],"area":[49],"with":[50,147,229],"goals":[52],"characterizing":[54],"approaches":[55],"applications,":[57],"summarizing":[58],"resources,":[60,166],"identifying":[62],"remaining":[63],"challenges.":[64],"MATERIALS":[65],"AND":[66],"METHODS:":[67],"search":[69,109,123],"English":[70],"using":[73,97],"lists":[74],"synonyms":[76,96],"both":[78],"task":[80],"(eg,":[81,87],"\"text":[82],"simplification\")":[83],"domain":[86],"\"biomedical\"),":[88],"searching":[90],"all":[92],"pairs":[93],"these":[95,154],"Google":[98],"Scholar,":[99,101],"Semantic":[100],"PubMed,":[102],"ACL":[103],"Anthology,":[104],"DBLP.":[106],"expand":[108],"terms":[110],"based":[111],"on":[112,171],"results":[113,124],"further":[115],"include":[116],"any":[117],"pertinent":[118],"papers":[119,135],"not":[120],"but":[125],"cited":[126],"by":[127],"those":[128],"that":[129,136],"are.":[130],"RESULTS:":[131],"find":[133],"45":[134],"we":[137],"deem":[138],"relevant":[139],"text,":[146],"data":[148,163,200,239],"spanning":[149],"7":[150],"natural":[151],"languages.":[152],"Of":[153,174],"(nonexclusively),":[155],"32":[156],"describe":[157,169],"tools":[158,176],"or":[159,165,177],"methods,":[160,178,218],"13":[161],"present":[162],"sets":[164],"9":[168],"impacts":[170],"human":[172],"comprehension.":[173],"22":[179],"are":[180,185],"chiefly":[181,186],"procedural":[182,207,230],"10":[184],"neural.":[187],"CONCLUSIONS:":[188],"Though":[189],"neural":[190,217,227],"hold":[192],"promise":[193],"task,":[196],"scarcity":[197],"parallel":[199,238],"led":[202],"continued":[204],"development":[205],"methods.":[208],"Various":[209],"low-resource":[210],"mitigations":[211],"proposed":[214],"advance":[216],"including":[219],"paragraph-level":[220],"unsupervised":[222],"models":[223,228],"augmentation":[225],"elements":[231],"drawing":[232],"from":[233],"knowledge":[234],"bases.":[235],"However,":[236],"high-quality":[237],"will":[240],"likely":[241],"be":[242],"crucial":[243],"developing":[245],"fully":[246],"automated":[247],"simplification.":[250]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
