{"id":"https://openalex.org/W4225335710","doi":"https://doi.org/10.1093/jamia/ocac127","title":"A scoping review of publicly available language tasks in clinical natural language processing","display_name":"A scoping review of publicly available language tasks in clinical natural language processing","publication_year":2022,"publication_date":"2022-08-03","ids":{"openalex":"https://openalex.org/W4225335710","doi":"https://doi.org/10.1093/jamia/ocac127","pmid":"https://pubmed.ncbi.nlm.nih.gov/35923088"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocac127","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocac127","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9471718","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101744555","display_name":"Yanjun Gao","orcid":"https://orcid.org/0000-0002-9341-7360"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yanjun Gao","raw_affiliation_strings":["ICU Data Science Lab, Department of Medicine, School of Medicine and Public Health, University of Wisconsin , Madison, Wisconsin, USA"],"raw_orcid":"https://orcid.org/0000-0002-9341-7360","affiliations":[{"raw_affiliation_string":"ICU Data Science Lab, Department of Medicine, School of Medicine and Public Health, University of Wisconsin , Madison, Wisconsin, USA","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054031099","display_name":"Dmitriy Dligach","orcid":"https://orcid.org/0000-0002-2585-2707"},"institutions":[{"id":"https://openalex.org/I1925986","display_name":"Loyola University Chicago","ror":"https://ror.org/04b6x2g63","country_code":"US","type":"education","lineage":["https://openalex.org/I1925986"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dmitriy Dligach","raw_affiliation_strings":["Department of Computer Science, Loyola University Chicago , Chicago, Illinois, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Loyola University Chicago , Chicago, Illinois, USA","institution_ids":["https://openalex.org/I1925986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036443259","display_name":"Leslie Christensen","orcid":"https://orcid.org/0000-0002-4040-5593"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leslie Christensen","raw_affiliation_strings":["School of Medicine and Public Health, University of Wisconsin , Madison, Wisconsin, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medicine and Public Health, University of Wisconsin , Madison, Wisconsin, USA","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003762551","display_name":"Samuel Tesch","orcid":null},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Samuel Tesch","raw_affiliation_strings":["School of Medicine and Public Health, University of Wisconsin , Madison, Wisconsin, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medicine and Public Health, University of Wisconsin , Madison, Wisconsin, USA","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038610951","display_name":"Ryan Laffin","orcid":null},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ryan Laffin","raw_affiliation_strings":["School of Medicine and Public Health, University of Wisconsin , Madison, Wisconsin, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medicine and Public Health, University of Wisconsin , Madison, Wisconsin, USA","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064023395","display_name":"Dongfang Xu","orcid":"https://orcid.org/0000-0003-0828-1102"},"institutions":[{"id":"https://openalex.org/I1288882113","display_name":"Boston Children's Hospital","ror":"https://ror.org/00dvg7y05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1288882113"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dongfang Xu","raw_affiliation_strings":["Computational Health Informatics Program, Boston Children's Hospital, Harvard University , Boston, Massachusetts, USA"],"raw_orcid":"https://orcid.org/0000-0003-0828-1102","affiliations":[{"raw_affiliation_string":"Computational Health Informatics Program, Boston Children's Hospital, Harvard University , Boston, Massachusetts, USA","institution_ids":["https://openalex.org/I1288882113","https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039901099","display_name":"Timothy A. Miller","orcid":"https://orcid.org/0000-0003-4513-403X"},"institutions":[{"id":"https://openalex.org/I1288882113","display_name":"Boston Children's Hospital","ror":"https://ror.org/00dvg7y05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1288882113"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Timothy Miller","raw_affiliation_strings":["Computational Health Informatics Program, Boston Children's Hospital, Harvard University , Boston, Massachusetts, USA"],"raw_orcid":"https://orcid.org/0000-0003-4513-403X","affiliations":[{"raw_affiliation_string":"Computational Health Informatics Program, Boston Children's Hospital, Harvard University , Boston, Massachusetts, USA","institution_ids":["https://openalex.org/I1288882113","https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070926324","display_name":"\u00d6zlem Uzuner","orcid":"https://orcid.org/0000-0001-8011-9850"},"institutions":[{"id":"https://openalex.org/I162714631","display_name":"George Mason University","ror":"https://ror.org/02jqj7156","country_code":"US","type":"education","lineage":["https://openalex.org/I162714631"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ozlem Uzuner","raw_affiliation_strings":["Department of Information Sciences and Technology, George Mason University , Fairfax, Virginia, USA"],"raw_orcid":"https://orcid.org/0000-0001-8011-9850","affiliations":[{"raw_affiliation_string":"Department of Information Sciences and Technology, George Mason University , Fairfax, Virginia, USA","institution_ids":["https://openalex.org/I162714631"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088547412","display_name":"Matthew M. Churpek","orcid":"https://orcid.org/0000-0002-4030-5250"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew M Churpek","raw_affiliation_strings":["ICU Data Science Lab, Department of Medicine, School of Medicine and Public Health, University of Wisconsin , Madison, Wisconsin, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICU Data Science Lab, Department of Medicine, School of Medicine and Public Health, University of Wisconsin , Madison, Wisconsin, USA","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063499248","display_name":"Majid Afshar","orcid":"https://orcid.org/0000-0002-6368-4652"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Majid Afshar","raw_affiliation_strings":["ICU Data Science Lab, Department of Medicine, School of Medicine and Public Health, University of Wisconsin , Madison, Wisconsin, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICU Data Science Lab, Department of Medicine, School of Medicine and Public Health, University of Wisconsin , Madison, Wisconsin, USA","institution_ids":["https://openalex.org/I135310074"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5101744555"],"corresponding_institution_ids":["https://openalex.org/I135310074"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":3.7454,"has_fulltext":false,"cited_by_count":27,"citation_normalized_percentile":{"value":0.93906132,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"29","issue":"10","first_page":"1797","last_page":"1806"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.36570000648498535,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.36570000648498535,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.22380000352859497,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.14309999346733093,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7627108097076416},{"id":"https://openalex.org/keywords/automatic-summarization","display_name":"Automatic summarization","score":0.5822681188583374},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5684555768966675},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.547105610370636},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.5219644904136658},{"id":"https://openalex.org/keywords/generalizability-theory","display_name":"Generalizability theory","score":0.45806625485420227},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.44866830110549927},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4384707808494568},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4308452904224396},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.4257645010948181},{"id":"https://openalex.org/keywords/standardization","display_name":"Standardization","score":0.4216609001159668},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4053701162338257},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3985232710838318},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.22851374745368958}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7627108097076416},{"id":"https://openalex.org/C170858558","wikidata":"https://www.wikidata.org/wiki/Q1394144","display_name":"Automatic summarization","level":2,"score":0.5822681188583374},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5684555768966675},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.547105610370636},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.5219644904136658},{"id":"https://openalex.org/C27158222","wikidata":"https://www.wikidata.org/wiki/Q5532422","display_name":"Generalizability theory","level":2,"score":0.45806625485420227},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.44866830110549927},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4384707808494568},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4308452904224396},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.4257645010948181},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.4216609001159668},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4053701162338257},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3985232710838318},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.22851374745368958},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/jamia/ocac127","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocac127","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:35923088","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35923088","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9471718","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9471718","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:9471718","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9471718","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.7699999809265137}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W27189800","https://openalex.org/W1019512417","https://openalex.org/W1672757658","https://openalex.org/W2096252540","https://openalex.org/W2109206523","https://openalex.org/W2114039834","https://openalex.org/W2125117006","https://openalex.org/W2132724073","https://openalex.org/W2137407193","https://openalex.org/W2160987310","https://openalex.org/W2168041406","https://openalex.org/W2190333735","https://openalex.org/W2236169403","https://openalex.org/W2396881363","https://openalex.org/W2463981085","https://openalex.org/W2560438049","https://openalex.org/W2608185370","https://openalex.org/W2624380710","https://openalex.org/W2778310824","https://openalex.org/W2891378911","https://openalex.org/W2908840510","https://openalex.org/W2963373823","https://openalex.org/W2975249097","https://openalex.org/W2979250794","https://openalex.org/W2980023705","https://openalex.org/W3015667612","https://openalex.org/W3088349482","https://openalex.org/W3094834348","https://openalex.org/W3110873124","https://openalex.org/W3212714602","https://openalex.org/W6747741389","https://openalex.org/W6768475984"],"related_works":["https://openalex.org/W2397677514","https://openalex.org/W1495820741","https://openalex.org/W2914293784","https://openalex.org/W2990177913","https://openalex.org/W1451471413","https://openalex.org/W2138729887","https://openalex.org/W2401910071","https://openalex.org/W4323056170","https://openalex.org/W2126732312","https://openalex.org/W4302329558"],"abstract_inverted_index":{"OBJECTIVE:":[0],"To":[1],"provide":[2,232],"a":[3,25,191,233,247],"scoping":[4],"review":[5,245],"of":[6,27,46,66,88,130,140,173,194,235],"papers":[7,68,240],"on":[8],"clinical":[9,71,106,131,162,187,213],"natural":[10],"language":[11,146],"processing":[12],"(NLP)":[13],"shared":[14,238],"tasks":[15,73,84,101,120,133,189],"that":[16],"use":[17],"publicly":[18],"available":[19],"electronic":[20],"health":[21],"record":[22],"data":[23,175,182,229],"from":[24,207,243],"cohort":[26],"patients.":[28],"MATERIALS":[29],"AND":[30],"METHODS:":[31],"We":[32,81,117,177,216,231],"searched":[33],"6":[34],"databases,":[35],"including":[36,91],"biomedical":[37],"research":[38],"and":[39,49,79,96,115,124,160,168,170,196,203,212,226,241],"computer":[40],"science":[41],"literature":[42],"databases.":[43],"A":[44,64],"round":[45],"title/abstract":[47],"screening":[48,51],"full-text":[50],"were":[52,102],"conducted":[53],"by":[54,85,121],"2":[55],"reviewers.":[56],"Our":[57],"method":[58],"followed":[59],"the":[60,83,86,119,138,155,161,174,197,237],"PRISMA-ScR":[61],"guidelines.":[62],"RESULTS:":[63],"total":[65],"35":[67],"with":[69,143,151],"48":[70],"NLP":[72,89,98,132,141,158,188,211],"met":[74],"inclusion":[75],"criteria":[76],"between":[77,154],"2007":[78],"2021.":[80],"categorized":[82],"type":[87],"problems,":[90],"named":[92],"entity":[93],"recognition,":[94],"summarization,":[95],"other":[97],"tasks.":[99],"Some":[100],"introduced":[103],"as":[104,111,137],"potential":[105],"decision":[107],"support":[108],"applications,":[109],"such":[110],"substance":[112],"abuse":[113],"detection,":[114],"phenotyping.":[116],"summarized":[118],"publication":[122],"venue":[123],"dataset":[125],"type.":[126],"DISCUSSION:":[127],"The":[128,185],"breadth":[129],"continues":[134],"to":[135,201,220],"grow":[136,202],"field":[139,198],"evolves":[142],"advancements":[144],"in":[145,171,181,228,246],"systems.":[147],"However,":[148],"gaps":[149],"exist":[150],"divergent":[152],"interests":[153],"general":[156,209],"domain":[157,210],"community":[159,164],"informatics":[163,214],"for":[165],"task":[166,239],"motivation":[167],"design,":[169],"generalizability":[172],"sources.":[176],"also":[178],"identified":[179],"issues":[180],"preparation.":[183,230],"CONCLUSION:":[184],"existing":[186],"cover":[190],"wide":[192],"range":[193],"topics":[195],"is":[199],"expected":[200],"attract":[204],"more":[205],"attention":[206],"both":[208],"community.":[215],"encourage":[217],"future":[218],"work":[219],"incorporate":[221],"multidisciplinary":[222],"collaboration,":[223],"reporting":[224],"transparency,":[225],"standardization":[227],"listing":[234],"all":[236],"datasets":[242],"this":[244],"GitLab":[248],"repository.":[249]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":5}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
