{"id":"https://openalex.org/W4282946251","doi":"https://doi.org/10.1093/jamia/ocac086","title":"Forecasting the future clinical events of a patient through contrastive learning","display_name":"Forecasting the future clinical events of a patient through contrastive learning","publication_year":2022,"publication_date":"2022-05-31","ids":{"openalex":"https://openalex.org/W4282946251","doi":"https://doi.org/10.1093/jamia/ocac086","pmid":"https://pubmed.ncbi.nlm.nih.gov/35641135"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocac086","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocac086","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9382392","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100404392","display_name":"Ziqi Zhang","orcid":"https://orcid.org/0000-0002-8587-8618"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ziqi Zhang","raw_affiliation_strings":["Department of Computer Science, Vanderbilt University , Nashville, Tennessee, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Vanderbilt University , Nashville, Tennessee, USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002556086","display_name":"Chao Yan","orcid":"https://orcid.org/0000-0002-6719-1388"},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chao Yan","raw_affiliation_strings":["Department of Biomedical Informatics, Vanderbilt University Medical Center , Nashville, Tennessee, USA"],"raw_orcid":"https://orcid.org/0000-0002-6719-1388","affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Vanderbilt University Medical Center , Nashville, Tennessee, USA","institution_ids":["https://openalex.org/I901861585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074003488","display_name":"Xinmeng Zhang","orcid":"https://orcid.org/0000-0002-3983-2635"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xinmeng Zhang","raw_affiliation_strings":["Department of Computer Science, Vanderbilt University , Nashville, Tennessee, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Vanderbilt University , Nashville, Tennessee, USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032086600","display_name":"Steve Nyemba","orcid":"https://orcid.org/0009-0009-5377-0037"},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steve L Nyemba","raw_affiliation_strings":["Department of Biomedical Informatics, Vanderbilt University Medical Center , Nashville, Tennessee, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Vanderbilt University Medical Center , Nashville, Tennessee, USA","institution_ids":["https://openalex.org/I901861585"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090647314","display_name":"Bradley Malin","orcid":"https://orcid.org/0000-0003-3040-5175"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]},{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bradley A Malin","raw_affiliation_strings":["Department of Biomedical Informatics, Vanderbilt University Medical Center , Nashville, Tennessee, USA","Department of Biostatistics, Vanderbilt University Medical Center , Nashville, Tennessee, USA","Department of Computer Science, Vanderbilt University , Nashville, Tennessee, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Vanderbilt University Medical Center , Nashville, Tennessee, USA","institution_ids":["https://openalex.org/I901861585"]},{"raw_affiliation_string":"Department of Biostatistics, Vanderbilt University Medical Center , Nashville, Tennessee, USA","institution_ids":["https://openalex.org/I901861585"]},{"raw_affiliation_string":"Department of Computer Science, Vanderbilt University , Nashville, Tennessee, USA","institution_ids":["https://openalex.org/I200719446"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100404392"],"corresponding_institution_ids":["https://openalex.org/I200719446"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":0.9706,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.79336457,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"29","issue":"9","first_page":"1584","last_page":"1592"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9750000238418579,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9750000238418579,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.004699999932199717,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.003700000001117587,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5809003114700317},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4056163430213928},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32618510723114014}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5809003114700317},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4056163430213928},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32618510723114014}],"mesh":[{"descriptor_ui":"D000075485","descriptor_name":"Population Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000075485","descriptor_name":"Population Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000075485","descriptor_name":"Population Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000075485","descriptor_name":"Population Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/jamia/ocac086","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocac086","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:35641135","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35641135","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9382392","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9382392","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:9382392","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9382392","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G5392795604","display_name":null,"funder_award_id":"U2COD023196","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G821485918","display_name":null,"funder_award_id":"UL1TR002243","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W2006776184","https://openalex.org/W2050697524","https://openalex.org/W2064675550","https://openalex.org/W2075766206","https://openalex.org/W2163922914","https://openalex.org/W2165698076","https://openalex.org/W2404901863","https://openalex.org/W2566079294","https://openalex.org/W2607113351","https://openalex.org/W2805089815","https://openalex.org/W2905483812","https://openalex.org/W2913340405","https://openalex.org/W2951934944","https://openalex.org/W2963243933","https://openalex.org/W2963305465","https://openalex.org/W2964006392","https://openalex.org/W2973113902","https://openalex.org/W2985962305","https://openalex.org/W2989893062","https://openalex.org/W2992144222","https://openalex.org/W2997064490","https://openalex.org/W3023371261","https://openalex.org/W3029078373","https://openalex.org/W3034942609","https://openalex.org/W3096655658","https://openalex.org/W3110404953","https://openalex.org/W3114632476","https://openalex.org/W4205170775","https://openalex.org/W6685812147","https://openalex.org/W6751823972","https://openalex.org/W6770467399","https://openalex.org/W6770753811","https://openalex.org/W6771659168"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"OBJECTIVE:":[0],"Deep":[1],"learning":[2,49,75,83],"models":[3],"for":[4,31,76,131],"clinical":[5,210],"event":[6,211],"forecasting":[7,130,160,212],"(CEF)":[8],"based":[9,46],"on":[10,47],"a":[11,43,56,100,167],"patient's":[12],"medical":[13],"history":[14],"have":[15],"improved":[16,215],"significantly":[17,216],"over":[18,84,132,180],"the":[19,53,85,90,114,142,151,157,181,196,223],"past":[20],"decade.":[21],"However,":[22],"their":[23,139],"transition":[24],"into":[25],"practice":[26],"has":[27],"been":[28],"limited,":[29],"particularly":[30],"diseases":[32],"with":[33,94,103,136,195],"very":[34],"low":[35],"prevalence.":[36],"In":[37],"this":[38],"paper,":[39],"we":[40],"introduce":[41],"CEF-CL,":[42],"novel":[44],"method":[45,92],"contrastive":[48,74,218],"to":[50,138],"forecast":[51],"in":[52,99,190],"face":[54],"of":[55,59,68,116,183,198,225],"limited":[57],"number":[58,197,224],"positive":[60,199,226],"training":[61,200,227],"instances.":[62],"MATERIALS":[63],"AND":[64],"METHODS:":[65],"CEF-CL":[66,171],"consists":[67],"two":[69],"primary":[70],"components:":[71],"(1)":[72],"unsupervised":[73],"patient":[77],"representation":[78,219],"and":[79,113,123,148,163,176,185],"(2)":[80],"supervised":[81,101],"transfer":[82],"derived":[86],"representation.":[87],"We":[88,128,155],"evaluate":[89],"new":[91],"along":[93],"state-of-the-art":[95,182],"model":[96],"architectures":[97],"trained":[98],"manner":[102],"electronic":[104],"health":[105],"records":[106],"data":[107],"from":[108],"Vanderbilt":[109],"University":[110],"Medical":[111],"Center":[112],"All":[115],"Us":[117],"Research":[118],"Program,":[119],"covering":[120],"48":[121],"000":[122,125],"16":[124],"patients,":[126],"respectively.":[127,187],"assess":[129],"100":[133],"diagnosis":[134],"codes":[135],"respect":[137],"area":[140,149],"under":[141,150],"receiver":[143],"operator":[144],"characteristic":[145],"curve":[146,153],"(AUROC)":[147],"precision-recall":[152],"(AUPRC).":[154],"investigate":[156],"correlation":[158],"between":[159],"performance":[161,178],"improvement":[162,179,189],"code":[164],"prevalence":[165],"via":[166],"Wald":[168],"Test.":[169],"RESULTS:":[170],"achieved":[172],"an":[173],"average":[174],"AUROC":[175,191],"AUPRC":[177],"8.0%-9.3%":[184],"11.7%-32.0%,":[186],"The":[188],"was":[192],"negatively":[193],"correlated":[194],"instances":[201,228],"(P":[202],"<":[203],".001).":[204],"CONCLUSION:":[205],"This":[206],"investigation":[207],"indicates":[208],"that":[209],"can":[213],"be":[214],"through":[217],"learning,":[220],"especially":[221],"when":[222],"is":[229],"small.":[230]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
