{"id":"https://openalex.org/W4284882498","doi":"https://doi.org/10.1093/jamia/ocac063","title":"Design and validation of a FHIR-based EHR-driven phenotyping toolbox","display_name":"Design and validation of a FHIR-based EHR-driven phenotyping toolbox","publication_year":2022,"publication_date":"2022-07-07","ids":{"openalex":"https://openalex.org/W4284882498","doi":"https://doi.org/10.1093/jamia/ocac063","pmid":"https://pubmed.ncbi.nlm.nih.gov/35799370"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocac063","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocac063","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9382394","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055435537","display_name":"Pascal Brandt","orcid":"https://orcid.org/0000-0001-5116-0555"},"institutions":[{"id":"https://openalex.org/I2801852214","display_name":"University of Washington Medical Center","ror":"https://ror.org/00wbzw723","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2801852214"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Pascal S Brandt","raw_affiliation_strings":["Department of Biomedical Informatics and Medical Education, University of Washington , Seattle, Washington, USA"],"raw_orcid":"https://orcid.org/0000-0001-5116-0555","affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics and Medical Education, University of Washington , Seattle, Washington, USA","institution_ids":["https://openalex.org/I2801852214"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007540286","display_name":"Jennifer A. Pacheco","orcid":"https://orcid.org/0000-0001-8021-5818"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer A Pacheco","raw_affiliation_strings":["Department of Preventive Medicine, Northwestern University Feinberg School of Medicine , Chicago, Illinois, USA"],"raw_orcid":"https://orcid.org/0000-0001-8021-5818","affiliations":[{"raw_affiliation_string":"Department of Preventive Medicine, Northwestern University Feinberg School of Medicine , Chicago, Illinois, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091282584","display_name":"Prakash Adekkanattu","orcid":"https://orcid.org/0000-0003-1125-1449"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4387153466","display_name":"Weill Cornell Medicine","ror":"https://ror.org/02r109517","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Prakash Adekkanattu","raw_affiliation_strings":["Department of Healthcare Policy and Research, Weill Cornell Medicine , New York, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Healthcare Policy and Research, Weill Cornell Medicine , New York, New York, USA","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089437330","display_name":"Evan Sholle","orcid":"https://orcid.org/0000-0001-9518-4399"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4387153466","display_name":"Weill Cornell Medicine","ror":"https://ror.org/02r109517","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Evan T Sholle","raw_affiliation_strings":["Department of Healthcare Policy and Research, Weill Cornell Medicine , New York, New York, USA"],"raw_orcid":"https://orcid.org/0000-0001-9518-4399","affiliations":[{"raw_affiliation_string":"Department of Healthcare Policy and Research, Weill Cornell Medicine , New York, New York, USA","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042199562","display_name":"Sajjad Abedian","orcid":"https://orcid.org/0000-0002-0411-5185"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4387153466","display_name":"Weill Cornell Medicine","ror":"https://ror.org/02r109517","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sajjad Abedian","raw_affiliation_strings":["Department of Healthcare Policy and Research, Weill Cornell Medicine , New York, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Healthcare Policy and Research, Weill Cornell Medicine , New York, New York, USA","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064434777","display_name":"Daniel J. Stone","orcid":"https://orcid.org/0000-0003-4506-0712"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel J Stone","raw_affiliation_strings":["Department of Artificial Intelligence and Informatics, Mayo Clinic , Rochester, Minnesota, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Artificial Intelligence and Informatics, Mayo Clinic , Rochester, Minnesota, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063580241","display_name":"David Knaack","orcid":null},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David M Knaack","raw_affiliation_strings":["Department of Artificial Intelligence and Informatics, Mayo Clinic , Rochester, Minnesota, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Artificial Intelligence and Informatics, Mayo Clinic , Rochester, Minnesota, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057917186","display_name":"Jie Xu","orcid":"https://orcid.org/0000-0001-7682-4776"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4387153466","display_name":"Weill Cornell Medicine","ror":"https://ror.org/02r109517","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jie Xu","raw_affiliation_strings":["Department of Healthcare Policy and Research, Weill Cornell Medicine , New York, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Healthcare Policy and Research, Weill Cornell Medicine , New York, New York, USA","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058023532","display_name":"Zhenxing Xu","orcid":"https://orcid.org/0000-0001-9515-523X"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4387153466","display_name":"Weill Cornell Medicine","ror":"https://ror.org/02r109517","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhenxing Xu","raw_affiliation_strings":["Department of Healthcare Policy and Research, Weill Cornell Medicine , New York, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Healthcare Policy and Research, Weill Cornell Medicine , New York, New York, USA","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085113833","display_name":"Yifan Peng","orcid":"https://orcid.org/0000-0001-9309-8331"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4387153466","display_name":"Weill Cornell Medicine","ror":"https://ror.org/02r109517","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yifan Peng","raw_affiliation_strings":["Department of Healthcare Policy and Research, Weill Cornell Medicine , New York, New York, USA"],"raw_orcid":"https://orcid.org/0000-0001-9309-8331","affiliations":[{"raw_affiliation_string":"Department of Healthcare Policy and Research, Weill Cornell Medicine , New York, New York, USA","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012833514","display_name":"Natalie C. Benda","orcid":"https://orcid.org/0000-0002-3256-0243"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4387153466","display_name":"Weill Cornell Medicine","ror":"https://ror.org/02r109517","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Natalie C Benda","raw_affiliation_strings":["Department of Healthcare Policy and Research, Weill Cornell Medicine , New York, New York, USA"],"raw_orcid":"https://orcid.org/0000-0002-3256-0243","affiliations":[{"raw_affiliation_string":"Department of Healthcare Policy and Research, Weill Cornell Medicine , New York, New York, USA","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115695181","display_name":"Fei Wang","orcid":"https://orcid.org/0000-0001-5768-7323"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4387153466","display_name":"Weill Cornell Medicine","ror":"https://ror.org/02r109517","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fei Wang","raw_affiliation_strings":["Department of Healthcare Policy and Research, Weill Cornell Medicine , New York, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Healthcare Policy and Research, Weill Cornell Medicine , New York, New York, USA","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100452550","display_name":"Yuan Luo","orcid":"https://orcid.org/0000-0003-0195-7456"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuan Luo","raw_affiliation_strings":["Department of Preventive Medicine, Northwestern University Feinberg School of Medicine , Chicago, Illinois, USA"],"raw_orcid":"https://orcid.org/0000-0003-0195-7456","affiliations":[{"raw_affiliation_string":"Department of Preventive Medicine, Northwestern University Feinberg School of Medicine , Chicago, Illinois, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007963072","display_name":"Guoqian Jiang","orcid":"https://orcid.org/0000-0003-2940-0019"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guoqian Jiang","raw_affiliation_strings":["Department of Artificial Intelligence and Informatics, Mayo Clinic , Rochester, Minnesota, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Artificial Intelligence and Informatics, Mayo Clinic , Rochester, Minnesota, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051691741","display_name":"Jyotishman Pathak","orcid":"https://orcid.org/0000-0002-4856-410X"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4387153466","display_name":"Weill Cornell Medicine","ror":"https://ror.org/02r109517","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jyotishman Pathak","raw_affiliation_strings":["Department of Healthcare Policy and Research, Weill Cornell Medicine , New York, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Healthcare Policy and Research, Weill Cornell Medicine , New York, New York, USA","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071369319","display_name":"Luke V. Rasmussen","orcid":"https://orcid.org/0000-0002-4497-8049"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Luke V Rasmussen","raw_affiliation_strings":["Department of Preventive Medicine, Northwestern University Feinberg School of Medicine , Chicago, Illinois, USA"],"raw_orcid":"https://orcid.org/0000-0002-4497-8049","affiliations":[{"raw_affiliation_string":"Department of Preventive Medicine, Northwestern University Feinberg School of Medicine , Chicago, Illinois, USA","institution_ids":["https://openalex.org/I111979921"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5055435537"],"corresponding_institution_ids":["https://openalex.org/I2801852214"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":2.7012,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.91779624,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"29","issue":"9","first_page":"1449","last_page":"1460"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.8015000224113464,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.8015000224113464,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.11079999804496765,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.018699999898672104,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.8720584511756897},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6831268072128296},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.42181020975112915},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34980207681655884},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34123170375823975},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2532293200492859}],"concepts":[{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.8720584511756897},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6831268072128296},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.42181020975112915},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34980207681655884},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34123170375823975},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2532293200492859}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011102","descriptor_name":"Polyhydroxyethyl Methacrylate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011102","descriptor_name":"Polyhydroxyethyl Methacrylate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011102","descriptor_name":"Polyhydroxyethyl Methacrylate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011102","descriptor_name":"Polyhydroxyethyl Methacrylate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/jamia/ocac063","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocac063","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9382394","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9382394","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},{"id":"pmid:35799370","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35799370","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:9382394","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9382394","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G1629986891","display_name":null,"funder_award_id":"R01 GM105688","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2448904081","display_name":"National Infrastructure for Standardized and Portable EHR Phenotyping Algorithms","funder_award_id":"5r01gm105688-09","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3423213359","display_name":null,"funder_award_id":"R01 MH121907","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G3540322187","display_name":null,"funder_award_id":"R01 MH121922","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G6233336011","display_name":null,"funder_award_id":"U01 TR003528","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G957774881","display_name":null,"funder_award_id":"R01 MH119177","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W23901004","https://openalex.org/W982442179","https://openalex.org/W1126991912","https://openalex.org/W1502865770","https://openalex.org/W1512404644","https://openalex.org/W1565461041","https://openalex.org/W1573988226","https://openalex.org/W1863753810","https://openalex.org/W2014096189","https://openalex.org/W2027867013","https://openalex.org/W2053154970","https://openalex.org/W2064337796","https://openalex.org/W2104608657","https://openalex.org/W2113952938","https://openalex.org/W2114831632","https://openalex.org/W2120986959","https://openalex.org/W2121628382","https://openalex.org/W2151068025","https://openalex.org/W2151868700","https://openalex.org/W2161484642","https://openalex.org/W2317648909","https://openalex.org/W2443882833","https://openalex.org/W2517755440","https://openalex.org/W2539403003","https://openalex.org/W2787336619","https://openalex.org/W2799619538","https://openalex.org/W2803290558","https://openalex.org/W2808129629","https://openalex.org/W2883657435","https://openalex.org/W2900481120","https://openalex.org/W2969270537","https://openalex.org/W2980904865","https://openalex.org/W2981864773","https://openalex.org/W2991319174","https://openalex.org/W3026073778","https://openalex.org/W3037184766","https://openalex.org/W3088156227","https://openalex.org/W3123304355","https://openalex.org/W3135467054","https://openalex.org/W3165591189","https://openalex.org/W3207406733","https://openalex.org/W3208021115","https://openalex.org/W3208307906","https://openalex.org/W4200000179","https://openalex.org/W6600950631","https://openalex.org/W6627291559","https://openalex.org/W6630034250","https://openalex.org/W6630546887","https://openalex.org/W6633859142","https://openalex.org/W6634436982","https://openalex.org/W6718167664","https://openalex.org/W6726424934","https://openalex.org/W6748392893","https://openalex.org/W6777829879","https://openalex.org/W6801363237"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2068663075","https://openalex.org/W4205140848","https://openalex.org/W2978678743","https://openalex.org/W2797837731","https://openalex.org/W2150344375","https://openalex.org/W829257147","https://openalex.org/W3081389670","https://openalex.org/W4390832911","https://openalex.org/W4385302116"],"abstract_inverted_index":{"OBJECTIVES:":[0],"To":[1],"develop":[2],"and":[3,17,56,79,104,109,116,134,153,170,175,177,184,202,220,229],"validate":[4],"a":[5,46,90,137,158,180,185,224],"standards-based":[6],"phenotyping":[7,37],"tool":[8,38,67,87],"to":[9,71,113,136],"author":[10],"electronic":[11],"health":[12],"record":[13],"(EHR)-based":[14],"phenotype":[15,47,76,93,131,139,146,199,203,212],"definitions":[16,22],"demonstrate":[18,191],"execution":[19],"of":[20,85,122,149,160,182,187,223],"the":[21,41,50,83,86,123,193,221],"against":[23],"heterogeneous":[24,206],"clinical":[25,207],"research":[26,208],"data":[27,209],"platforms.":[28],"MATERIALS":[29],"AND":[30],"METHODS:":[31],"We":[32,62,81,190],"developed":[33],"an":[34],"open-source,":[35],"standards-compliant":[36,218],"known":[39],"as":[40],"PhEMA":[42,124,194],"Workbench":[43,125,195],"that":[44,192,214],"enables":[45],"representation":[48,226],"using":[49],"Fast":[51],"Healthcare":[52],"Interoperability":[53],"Resources":[54],"(FHIR)":[55],"Clinical":[57],"Quality":[58],"Language":[59],"(CQL)":[60],"standards.":[61],"then":[63],"demonstrated":[64],"how":[65],"this":[66],"can":[68,196,230],"be":[69],"used":[70,110],"conduct":[72],"EHR-based":[73],"phenotyping,":[74],"including":[75],"authoring,":[77,132],"execution,":[78,133,201],"validation.":[80],"validated":[82],"performance":[84,167],"by":[88],"executing":[89],"thrombotic":[91,144],"event":[92,145],"definition":[94,140,147,213],"at":[95],"3":[96],"sites,":[97],"Mayo":[98],"Clinic":[99],"(MC),":[100],"Northwestern":[101],"Medicine":[102,107],"(NM),":[103],"Weill":[105],"Cornell":[106],"(WCM),":[108],"manual":[111],"review":[112],"determine":[114],"precision":[115,174,181],"recall.":[117],"RESULTS:":[118],"An":[119],"initial":[120],"version":[121],"has":[126],"been":[127],"released,":[128],"which":[129],"supports":[130],"publishing":[135],"shared":[138],"repository.":[141],"The":[142],"resulting":[143],"consisted":[148],"11":[150],"CQL":[151],"statements,":[152],"24":[154],"value":[155],"sets":[156],"containing":[157],"total":[159],"834":[161],"codes.":[162],"Technical":[163],"validation":[164],"showed":[165],"satisfactory":[166],"(both":[168],"NM":[169],"MC":[171],"had":[172,179],"100%":[173],"recall":[176,186],"WCM":[178],"95%":[183],"84%).":[188],"CONCLUSIONS:":[189],"facilitate":[197],"EHR-driven":[198],"definition,":[200],"sharing":[204],"in":[205],"environments.":[210],"A":[211],"integrates":[215],"with":[216],"existing":[217],"systems,":[219],"use":[222],"formal":[225],"facilitates":[227],"automation":[228],"decrease":[231],"potential":[232],"for":[233],"human":[234],"error.":[235]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1}],"updated_date":"2026-08-12T21:12:35.861297","created_date":"2025-10-10T00:00:00"}
