{"id":"https://openalex.org/W3112820477","doi":"https://doi.org/10.1093/jamia/ocab114","title":"DeepADEMiner: a deep learning pharmacovigilance pipeline for extraction and normalization of adverse drug event mentions on Twitter","display_name":"DeepADEMiner: a deep learning pharmacovigilance pipeline for extraction and normalization of adverse drug event mentions on Twitter","publication_year":2021,"publication_date":"2021-06-08","ids":{"openalex":"https://openalex.org/W3112820477","doi":"https://doi.org/10.1093/jamia/ocab114","mag":"3112820477","pmid":"https://pubmed.ncbi.nlm.nih.gov/34270701"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocab114","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocab114","pdf_url":"https://academic.oup.com/jamia/article-pdf/28/10/2184/40408928/ocab114.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jamia/article-pdf/28/10/2184/40408928/ocab114.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068908108","display_name":"Arjun Magge","orcid":"https://orcid.org/0000-0002-4109-1346"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arjun Magge","raw_affiliation_strings":["DBEI, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DBEI, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012311258","display_name":"Elena Tutubalina","orcid":"https://orcid.org/0000-0001-7936-0284"},"institutions":[{"id":"https://openalex.org/I21203515","display_name":"Kazan Federal University","ror":"https://ror.org/05256ym39","country_code":"RU","type":"education","lineage":["https://openalex.org/I21203515"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Elena Tutubalina","raw_affiliation_strings":["Kazan Federal University, Kazan, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kazan Federal University, Kazan, Russia","institution_ids":["https://openalex.org/I21203515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078878309","display_name":"Zulfat Miftahutdinov","orcid":null},"institutions":[{"id":"https://openalex.org/I21203515","display_name":"Kazan Federal University","ror":"https://ror.org/05256ym39","country_code":"RU","type":"education","lineage":["https://openalex.org/I21203515"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Zulfat Miftahutdinov","raw_affiliation_strings":["Kazan Federal University, Kazan, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kazan Federal University, Kazan, Russia","institution_ids":["https://openalex.org/I21203515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019116960","display_name":"Ilseyar Alimova","orcid":"https://orcid.org/0000-0003-4528-6631"},"institutions":[{"id":"https://openalex.org/I21203515","display_name":"Kazan Federal University","ror":"https://ror.org/05256ym39","country_code":"RU","type":"education","lineage":["https://openalex.org/I21203515"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Ilseyar Alimova","raw_affiliation_strings":["Kazan Federal University, Kazan, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kazan Federal University, Kazan, Russia","institution_ids":["https://openalex.org/I21203515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012487697","display_name":"Anne Dirkson","orcid":"https://orcid.org/0000-0002-4332-0296"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Anne Dirkson","raw_affiliation_strings":["LIACS, Leiden University, Leiden, Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIACS, Leiden University, Leiden, Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027124439","display_name":"Suzan Verberne","orcid":"https://orcid.org/0000-0002-9609-9505"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Suzan Verberne","raw_affiliation_strings":["LIACS, Leiden University, Leiden, Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIACS, Leiden University, Leiden, Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040948702","display_name":"Davy Weissenbacher","orcid":"https://orcid.org/0000-0001-8331-3675"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Davy Weissenbacher","raw_affiliation_strings":["DBEI, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DBEI, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022014033","display_name":"Graciela Gonzalez\u2010Hernandez","orcid":"https://orcid.org/0000-0002-6416-9556"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Graciela Gonzalez-Hernandez","raw_affiliation_strings":["DBEI, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DBEI, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA","institution_ids":["https://openalex.org/I79576946"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5022014033"],"corresponding_institution_ids":["https://openalex.org/I79576946"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":{"value":3967,"currency":"USD","value_usd":3967},"fwci":5.2755,"has_fulltext":false,"cited_by_count":52,"citation_normalized_percentile":{"value":0.96707701,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"28","issue":"10","first_page":"2184","last_page":"2192"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.9096999764442444,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.9096999764442444,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.008299999870359898,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11147","display_name":"Misinformation and Its Impacts","score":0.007899999618530273,"subfield":{"id":"https://openalex.org/subfields/3312","display_name":"Sociology and Political Science"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pharmacovigilance","display_name":"Pharmacovigilance","score":0.8740473389625549},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.8112137317657471},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.7771944999694824},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7378813028335571},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7018799185752869},{"id":"https://openalex.org/keywords/social-media","display_name":"Social media","score":0.543585479259491},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.5413616895675659},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5115523934364319},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5021326541900635},{"id":"https://openalex.org/keywords/pipeline-transport","display_name":"Pipeline transport","score":0.4981827735900879},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4866552948951721},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.44821682572364807},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42338889837265015},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.410474956035614},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3563773036003113},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.1430351734161377},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.12328475713729858},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.11973890662193298},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.11222970485687256},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1074310839176178}],"concepts":[{"id":"https://openalex.org/C57658597","wikidata":"https://www.wikidata.org/wiki/Q1550789","display_name":"Pharmacovigilance","level":3,"score":0.8740473389625549},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.8112137317657471},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.7771944999694824},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7378813028335571},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7018799185752869},{"id":"https://openalex.org/C518677369","wikidata":"https://www.wikidata.org/wiki/Q202833","display_name":"Social media","level":2,"score":0.543585479259491},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.5413616895675659},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5115523934364319},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5021326541900635},{"id":"https://openalex.org/C175309249","wikidata":"https://www.wikidata.org/wiki/Q725864","display_name":"Pipeline transport","level":2,"score":0.4981827735900879},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4866552948951721},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.44821682572364807},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42338889837265015},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.410474956035614},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3563773036003113},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.1430351734161377},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.12328475713729858},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.11973890662193298},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.11222970485687256},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1074310839176178},{"id":"https://openalex.org/C87717796","wikidata":"https://www.wikidata.org/wiki/Q146326","display_name":"Environmental engineering","level":1,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060735","descriptor_name":"Pharmacovigilance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060735","descriptor_name":"Pharmacovigilance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060735","descriptor_name":"Pharmacovigilance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D061108","descriptor_name":"Social Media","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D061108","descriptor_name":"Social Media","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D061108","descriptor_name":"Social Media","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/jamia/ocab114","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocab114","pdf_url":"https://academic.oup.com/jamia/article-pdf/28/10/2184/40408928/ocab114.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:34270701","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34270701","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:europepmc.org:7342057","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC8449608","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8449608","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8449608","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},{"id":"pmh:oai:scholarlypublications.universiteitleiden.nl:item_3246957","is_oa":true,"landing_page_url":"https://hdl.handle.net/1887/3246957","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"Article / Letter to editor"},{"id":"pmh:ul:oai:scholarlypublications.universiteitleiden.nl:item_3246957","is_oa":true,"landing_page_url":"http://hdl.handle.net/1887/3246957","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of the American Medical Informatics Association, 28(10), 2184 - 2192. Oxford University Press (OUP)","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/jamia/ocab114","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocab114","pdf_url":"https://academic.oup.com/jamia/article-pdf/28/10/2184/40408928/ocab114.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3112820477.pdf"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1809871100","https://openalex.org/W2071478164","https://openalex.org/W2085752173","https://openalex.org/W2102742655","https://openalex.org/W2153972688","https://openalex.org/W2159583324","https://openalex.org/W2171469118","https://openalex.org/W2250539671","https://openalex.org/W2493916176","https://openalex.org/W2793300267","https://openalex.org/W2808345718","https://openalex.org/W2895296143","https://openalex.org/W2912695917","https://openalex.org/W2945785264","https://openalex.org/W2976193469","https://openalex.org/W3004025777","https://openalex.org/W6691431627"],"related_works":["https://openalex.org/W2793132289","https://openalex.org/W2334378031","https://openalex.org/W2916255597","https://openalex.org/W3091569222","https://openalex.org/W4241018868","https://openalex.org/W2999302224","https://openalex.org/W1495833002","https://openalex.org/W2075635421","https://openalex.org/W2964631078","https://openalex.org/W3160627956"],"abstract_inverted_index":{"OBJECTIVE:":[0],"Research":[1],"on":[2,10,23,143,172,234,244],"pharmacovigilance":[3,189],"from":[4,217],"social":[5,80,193],"media":[6,81,194],"data":[7,236],"has":[8,68],"focused":[9],"mining":[11],"adverse":[12],"drug":[13],"events":[14],"(ADEs)":[15],"using":[16,220],"annotated":[17],"datasets,":[18],"with":[19,111,129],"publications":[20],"generally":[21],"focusing":[22],"1":[24],"of":[25,37,51,79,97,117,151,158,168,179,200,207],"3":[26,134],"tasks:":[27],"ADE":[28,38,41,57,98,102,126],"classification,":[29],"named":[30],"entity":[31,165],"recognition":[32],"for":[33,76,83,93,132],"identifying":[34],"the":[35,48,101,107,118,173,180,198,204,225,245],"span":[36,155],"mentions,":[39],"and":[40,95,146,162,210,231],"mention":[42],"normalization":[43],"to":[44,55,63,106,183,228,240],"standardized":[45],"terminologies.":[46],"While":[47],"common":[49],"goal":[50],"such":[52,201],"systems":[53,190],"is":[54,104],"detect":[56],"signals":[58],"that":[59,191],"can":[60],"be":[61,229],"used":[62],"inform":[64],"public":[65],"policy,":[66],"it":[67],"been":[69],"impeded":[70],"largely":[71],"by":[72],"limited":[73],"end-to-end":[74,164,246],"solutions":[75],"large-scale":[77],"analysis":[78],"reports":[82],"different":[84,226],"drugs.":[85],"MATERIALS":[86],"AND":[87],"METHODS:":[88],"We":[89,196],"present":[90,113],"a":[91,148,221],"dataset":[92],"training":[94],"evaluation":[96],"pipelines":[99],"where":[100],"distribution":[103],"closer":[105],"average":[108],"'natural":[109],"balance'":[110],"ADEs":[112,216],"in":[114,203,238],"about":[115],"7%":[116],"tweets.":[119],"The":[120,137,177],"deep":[121],"learning":[122],"architecture":[123,223],"involves":[124],"an":[125,163],"extraction":[127,156],"pipeline":[128,222],"individual":[130],"components":[131,227],"all":[133],"tasks.":[135],"RESULTS:":[136],"system":[138],"presented":[139,174],"achieved":[140],"state-of-the-art":[141],"performance":[142,150,157,167,178,243],"comparable":[144],"datasets":[145],"scored":[147],"classification":[149],"F1":[152,159,169],"=":[153,160,170],"0.63,":[154],"0.44":[161],"resolution":[166,247],"0.34":[171],"dataset.":[175],"DISCUSSION:":[176],"models":[181,202],"continues":[182],"highlight":[184],"multiple":[185],"challenges":[186],"when":[187],"deploying":[188],"use":[192],"data.":[195],"discuss":[197],"implications":[199],"downstream":[205],"tasks":[206],"signal":[208],"detection":[209],"suggest":[211],"future":[212],"enhancements.":[213],"CONCLUSION:":[214],"Mining":[215],"Twitter":[218],"posts":[219],"requires":[224],"trained":[230],"tuned":[232],"based":[233],"input":[235],"imbalance":[237],"order":[239],"ensure":[241],"optimal":[242],"task.":[248]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":1}],"updated_date":"2026-06-17T08:01:34.144755","created_date":"2025-10-10T00:00:00"}