{"id":"https://openalex.org/W3173561451","doi":"https://doi.org/10.1093/jamia/ocab090","title":"Biomedical and clinical English model packages for the Stanza Python NLP library","display_name":"Biomedical and clinical English model packages for the Stanza Python NLP library","publication_year":2021,"publication_date":"2021-05-04","ids":{"openalex":"https://openalex.org/W3173561451","doi":"https://doi.org/10.1093/jamia/ocab090","mag":"3173561451","pmid":"https://pubmed.ncbi.nlm.nih.gov/34157094"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocab090","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocab090","pdf_url":"https://academic.oup.com/jamia/article-pdf/28/9/1892/39731803/ocab090.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jamia/article-pdf/28/9/1892/39731803/ocab090.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100349345","display_name":"Yuhao Zhang","orcid":"https://orcid.org/0000-0002-2014-4373"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuhao Zhang","raw_affiliation_strings":["Biomedical Informatics Training Program, Stanford University, Stanford, California, USA","Computer Science Department, Stanford University, Stanford, California, USA"],"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Training Program, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Computer Science Department, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100349345","display_name":"Yuhao Zhang","orcid":"https://orcid.org/0000-0002-2014-4373"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yuhao Zhang","raw_affiliation_strings":["Biomedical Informatics Training Program, Stanford University, Stanford, California, USA","Computer Science Department, Stanford University, Stanford, California, USA"],"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Training Program, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Computer Science Department, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yuhui Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuhui Zhang","raw_affiliation_strings":["Biomedical Informatics Training Program, Stanford University, Stanford, California, USA","Computer Science Department, Stanford University, Stanford, California, USA"],"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Training Program, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Computer Science Department, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yuhui Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yuhui Zhang","raw_affiliation_strings":["Biomedical Informatics Training Program, Stanford University, Stanford, California, USA","Computer Science Department, Stanford University, Stanford, California, USA","Computer Science and Linguistics Departments, Stanford University, Stanford, California, USA"],"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Training Program, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Computer Science Department, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Computer Science and Linguistics Departments, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041658523","display_name":"Peng Qi","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peng Qi","raw_affiliation_strings":["Computer Science Department, Stanford University, Stanford, California, USA","Department of Radiology, Stanford University, Stanford, California, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Radiology, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046006076","display_name":"Christopher D. Manning","orcid":"https://orcid.org/0000-0001-6155-649X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher D Manning","raw_affiliation_strings":["Computer Science and Linguistics Departments, Stanford University, Stanford, California, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science and Linguistics Departments, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087710258","display_name":"Curtis P. Langlotz","orcid":"https://orcid.org/0000-0002-8972-8051"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Curtis P Langlotz","raw_affiliation_strings":["Department of Radiology, Stanford University, Stanford, California, USA"],"affiliations":[{"raw_affiliation_string":"Department of Radiology, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5100349345"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":{"value":3967,"currency":"USD","value_usd":3967},"fwci":7.4001,"has_fulltext":true,"cited_by_count":111,"citation_normalized_percentile":{"value":0.98306236,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"28","issue":"9","first_page":"1892","last_page":"1899"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9800999760627747,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9682999849319458,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/stanza","display_name":"Stanza","score":0.821662187576294},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.820949912071228},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6725717782974243},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5792214274406433},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5515972971916199},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2240091860294342},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.159372478723526},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.07051801681518555}],"concepts":[{"id":"https://openalex.org/C2776751804","wikidata":"https://www.wikidata.org/wiki/Q1756348","display_name":"Stanza","level":3,"score":0.821662187576294},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.820949912071228},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6725717782974243},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5792214274406433},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5515972971916199},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2240091860294342},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.159372478723526},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.07051801681518555},{"id":"https://openalex.org/C164913051","wikidata":"https://www.wikidata.org/wiki/Q482","display_name":"Poetry","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/jamia/ocab090","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocab090","pdf_url":"https://academic.oup.com/jamia/article-pdf/28/9/1892/39731803/ocab090.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:34157094","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34157094","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8363782","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8363782","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/jamia/ocab090","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocab090","pdf_url":"https://academic.oup.com/jamia/article-pdf/28/9/1892/39731803/ocab090.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5099999904632568,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3173561451.pdf","grobid_xml":"https://content.openalex.org/works/W3173561451.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1602694398","https://openalex.org/W1679133234","https://openalex.org/W1869282115","https://openalex.org/W1976316416","https://openalex.org/W2055032581","https://openalex.org/W2071879021","https://openalex.org/W2087227067","https://openalex.org/W2100627415","https://openalex.org/W2108475224","https://openalex.org/W2120754707","https://openalex.org/W2122402213","https://openalex.org/W2146089916","https://openalex.org/W2149369282","https://openalex.org/W2157814042","https://openalex.org/W2159583324","https://openalex.org/W2163107094","https://openalex.org/W2168041406","https://openalex.org/W2169099542","https://openalex.org/W2346452181","https://openalex.org/W2396881363","https://openalex.org/W2769851464","https://openalex.org/W2887672952","https://openalex.org/W2911489562","https://openalex.org/W2944400536","https://openalex.org/W2963339489","https://openalex.org/W2998068467","https://openalex.org/W3104713542"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4404603537","https://openalex.org/W4317935840","https://openalex.org/W2811421009","https://openalex.org/W4233308327","https://openalex.org/W2996075205","https://openalex.org/W1956940236","https://openalex.org/W3204019825"],"abstract_inverted_index":{"We":[0,43],"introduce":[1],"biomedical":[2],"and":[3,25],"clinical":[4],"NLP":[5],"packages":[6,13],"built":[7],"for":[8,29],"the":[9,20,23],"Stanza":[10],"library.":[11],"These":[12],"offer":[14],"performance":[15],"that":[16],"is":[17],"similar":[18],"to":[19],"state":[21],"of":[22,31],"art,":[24],"are":[26],"also":[27,44],"optimized":[28],"ease":[30],"use.":[32],"To":[33],"facilitate":[34],"research,":[35],"we":[36],"make":[37],"all":[38],"our":[39],"models":[40],"publicly":[41],"available.":[42],"provide":[45],"an":[46],"online":[47],"demonstration":[48],"(http://stanza.run/bio).":[49]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":17},{"year":2024,"cited_by_count":24},{"year":2023,"cited_by_count":34},{"year":2022,"cited_by_count":24},{"year":2021,"cited_by_count":9},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
