{"id":"https://openalex.org/W3087321790","doi":"https://doi.org/10.1093/jamia/ocaa128","title":"Assessing the enrichment of dietary supplement coverage in the Unified Medical Language System","display_name":"Assessing the enrichment of dietary supplement coverage in the Unified Medical Language System","publication_year":2020,"publication_date":"2020-06-03","ids":{"openalex":"https://openalex.org/W3087321790","doi":"https://doi.org/10.1093/jamia/ocaa128","mag":"3087321790","pmid":"https://pubmed.ncbi.nlm.nih.gov/32940692"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocaa128","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocaa128","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7566420","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013038150","display_name":"Jake Vasilakes","orcid":"https://orcid.org/0000-0001-6729-0936"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jake Vasilakes","raw_affiliation_strings":["Department of Pharmaceutical Care and Health Systems, University of Minnesota, Minneapolis, Minnesota, USA","Institute for Health Informatics, University of Minnesota, Minneapolis, Minnesota, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Care and Health Systems, University of Minnesota, Minneapolis, Minnesota, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"Institute for Health Informatics, University of Minnesota, Minneapolis, Minnesota, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007836841","display_name":"Anusha Bompelli","orcid":"https://orcid.org/0000-0001-9783-632X"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anusha Bompelli","raw_affiliation_strings":["Institute for Health Informatics, University of Minnesota, Minneapolis, Minnesota, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Health Informatics, University of Minnesota, Minneapolis, Minnesota, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033047276","display_name":"Jeffrey R. Bishop","orcid":"https://orcid.org/0000-0001-7653-8980"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey R Bishop","raw_affiliation_strings":["Department of Experimental and Clinical Pharmacy, University of Minnesota, Minneapolis, Minnesota, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Experimental and Clinical Pharmacy, University of Minnesota, Minneapolis, Minnesota, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032913460","display_name":"Terrence J Adam","orcid":"https://orcid.org/0000-0002-8666-2587"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Terrence J Adam","raw_affiliation_strings":["Department of Pharmaceutical Care and Health Systems, University of Minnesota, Minneapolis, Minnesota, USA","Institute for Health Informatics, University of Minnesota, Minneapolis, Minnesota, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Care and Health Systems, University of Minnesota, Minneapolis, Minnesota, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"Institute for Health Informatics, University of Minnesota, Minneapolis, Minnesota, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073807945","display_name":"Olivier Bodenreider","orcid":"https://orcid.org/0000-0003-4769-4217"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Olivier Bodenreider","raw_affiliation_strings":["Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, Maryland, USA"],"raw_orcid":"https://orcid.org/0000-0003-4769-4217","affiliations":[{"raw_affiliation_string":"Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, Maryland, USA","institution_ids":["https://openalex.org/I4210109390"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100421963","display_name":"Rui Zhang","orcid":"https://orcid.org/0000-0001-8258-3585"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Rui Zhang","raw_affiliation_strings":["Department of Pharmaceutical Care and Health Systems, University of Minnesota, Minneapolis, Minnesota, USA","Institute for Health Informatics, University of Minnesota, Minneapolis, Minnesota, USA"],"raw_orcid":"https://orcid.org/0000-0001-8258-3585","affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Care and Health Systems, University of Minnesota, Minneapolis, Minnesota, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"Institute for Health Informatics, University of Minnesota, Minneapolis, Minnesota, USA","institution_ids":["https://openalex.org/I130238516"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100421963"],"corresponding_institution_ids":["https://openalex.org/I130238516"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":0.6669,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.67839336,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"27","issue":"10","first_page":"1547","last_page":"1555"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9186999797821045,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9186999797821045,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.011300000362098217,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13984","display_name":"Nutrition, Genetics, and Disease","score":0.00930000003427267,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.9899039268493652},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.7644586563110352},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7031627893447876},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5798962712287903},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.48339763283729553},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4649921953678131},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.44127795100212097},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.24512401223182678}],"concepts":[{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.9899039268493652},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.7644586563110352},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7031627893447876},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5798962712287903},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.48339763283729553},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4649921953678131},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.44127795100212097},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.24512401223182678},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019587","descriptor_name":"Dietary Supplements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019587","descriptor_name":"Dietary Supplements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019587","descriptor_name":"Dietary Supplements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/jamia/ocaa128","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocaa128","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:32940692","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32940692","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7566420","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7566420","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:7566420","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7566420","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.7300000190734863}],"awards":[{"id":"https://openalex.org/G4427315957","display_name":null,"funder_award_id":"UL1TR002494","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W1483238188","https://openalex.org/W1507826778","https://openalex.org/W1723331260","https://openalex.org/W1965329740","https://openalex.org/W1966976587","https://openalex.org/W2015854890","https://openalex.org/W2019096004","https://openalex.org/W2100401627","https://openalex.org/W2101747459","https://openalex.org/W2106972184","https://openalex.org/W2116315220","https://openalex.org/W2126374659","https://openalex.org/W2128413840","https://openalex.org/W2159583324","https://openalex.org/W2260396455","https://openalex.org/W2296109491","https://openalex.org/W2417240622","https://openalex.org/W2612107143","https://openalex.org/W2884967921","https://openalex.org/W2887535136","https://openalex.org/W2911489562","https://openalex.org/W2979250794","https://openalex.org/W2982021612","https://openalex.org/W3007352422","https://openalex.org/W4243348914","https://openalex.org/W4294214983","https://openalex.org/W6628773319","https://openalex.org/W6630265398","https://openalex.org/W6637496138","https://openalex.org/W6675354380","https://openalex.org/W6678684508","https://openalex.org/W6696893686","https://openalex.org/W6717047237","https://openalex.org/W6737779112","https://openalex.org/W6769596829"],"related_works":["https://openalex.org/W2350593162","https://openalex.org/W2390350206","https://openalex.org/W2003127701","https://openalex.org/W2401244299","https://openalex.org/W2563868050","https://openalex.org/W1822792362","https://openalex.org/W1507779355","https://openalex.org/W2138789621","https://openalex.org/W2575181596","https://openalex.org/W2069107439"],"abstract_inverted_index":{"OBJECTIVE:":[0],"We":[1,59],"sought":[2],"to":[3,71,119,236],"assess":[4],"the":[5,15,24,27,38,42,47,53,61,66,72,84,90,120,138,153,162,177,208,223,227],"need":[6],"for":[7,214],"additional":[8],"coverage":[9,43,80,107],"of":[10,44,81,113,127,137,187,210],"dietary":[11],"supplements":[12],"(DS)":[13],"in":[14,52,89,226],"Unified":[16],"Medical":[17],"Language":[18],"System":[19],"(UMLS)":[20],"by":[21,68,201,232,240],"investigating":[22],"(1)":[23],"overlap":[25,62,175],"between":[26,63],"integrated":[28],"DIetary":[29],"Supplements":[30],"Knowledge":[31],"base":[32],"(iDISK)":[33],"DS":[34,50,87,97,195,216,224,234],"ingredient":[35],"terminology":[36],"and":[37,40,46,65,76,83,155,239],"UMLS":[39,48,67,73,85,190,228],"(2)":[41],"iDISK":[45,64,70,82,114,128,150,171,211],"over":[49,86,125],"mentions":[51,88],"biomedical":[54,91],"literature.":[55],"MATERIALS":[56],"AND":[57],"METHODS:":[58],"estimated":[60],"mapping":[69],"using":[74],"exact":[75],"normalized":[77],"strings.":[78],"The":[79,106,203],"literature":[92],"was":[93],"evaluated":[94],"via":[95],"a":[96,135,157,166,194],"named-entity":[98],"recognition":[99],"(NER)":[100],"task":[101],"within":[102],"PubMed":[103],"abstracts.":[104],"RESULTS:":[105],"analysis":[108],"revealed":[109,133],"that":[110,134,207,222],"only":[111],"30%":[112],"terms":[115,140],"can":[116],"be":[117,199,230],"matched":[118],"UMLS,":[121,163,178],"although":[122],"these":[123,188],"cover":[124],"99%":[126],"concepts.":[129],"A":[130],"manual":[131],"review":[132],"majority":[136],"unmatched":[139],"represented":[141],"new":[142,242],"synonyms,":[143],"rather":[144],"than":[145,161],"lexical":[146],"variants.":[147],"For":[148],"NER,":[149],"nearly":[151],"doubles":[152],"precision":[154],"achieves":[156],"higher":[158],"F1":[159],"score":[160],"while":[164],"maintaining":[165],"competitive":[167],"recall.":[168],"DISCUSSION:":[169],"While":[170],"has":[172],"significant":[173],"concept":[174],"with":[176],"it":[179],"contains":[180],"many":[181,237],"novel":[182],"synonyms.":[183,243],"Furthermore,":[184],"almost":[185],"3000":[186],"overlapping":[189],"concepts":[191,238],"are":[192],"missing":[193],"designation,":[196],"which":[197],"could":[198,229],"provided":[200],"iDISK.":[202],"NER":[204],"experiments":[205],"show":[206,221],"specialization":[209],"is":[212],"useful":[213],"identifying":[215],"mentions.":[217],"CONCLUSIONS:":[218],"Our":[219],"results":[220],"representation":[225],"enriched":[231],"adding":[233,241],"designations":[235]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
