{"id":"https://openalex.org/W3046028038","doi":"https://doi.org/10.1093/jamia/ocaa109","title":"A graph-based method for reconstructing entities from coordination ellipsis in medical text","display_name":"A graph-based method for reconstructing entities from coordination ellipsis in medical text","publication_year":2020,"publication_date":"2020-05-27","ids":{"openalex":"https://openalex.org/W3046028038","doi":"https://doi.org/10.1093/jamia/ocaa109","mag":"3046028038","pmid":"https://pubmed.ncbi.nlm.nih.gov/32719840"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocaa109","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocaa109","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7647336","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064187343","display_name":"Chi Yuan","orcid":"https://orcid.org/0000-0002-8677-1476"},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Chi Yuan","raw_affiliation_strings":["Department of Biomedical Informatics, Columbia University, New York, New York, USA","Department of Computer Science and Technology, Nanjing University of Science and Technology, Nanjing, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University, New York, New York, USA","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Department of Computer Science and Technology, Nanjing University of Science and Technology, Nanjing, China","institution_ids":["https://openalex.org/I36399199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100633735","display_name":"Yongli Wang","orcid":"https://orcid.org/0000-0003-2219-067X"},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yongli Wang","raw_affiliation_strings":["Department of Computer Science and Technology, Nanjing University of Science and Technology, Nanjing, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Nanjing University of Science and Technology, Nanjing, China","institution_ids":["https://openalex.org/I36399199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045892464","display_name":"Ning Shang","orcid":"https://orcid.org/0000-0001-7040-5204"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ning Shang","raw_affiliation_strings":["Department of Biomedical Informatics, Columbia University, New York, New York, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University, New York, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101820102","display_name":"Ziran Li","orcid":"https://orcid.org/0009-0007-0620-3561"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ziran Li","raw_affiliation_strings":["Department of Biomedical Informatics, Columbia University, New York, New York, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University, New York, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046848922","display_name":"Ruxin Zhao","orcid":"https://orcid.org/0000-0002-6810-2631"},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruxin Zhao","raw_affiliation_strings":["Department of Computer Science and Technology, Nanjing University of Science and Technology, Nanjing, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Nanjing University of Science and Technology, Nanjing, China","institution_ids":["https://openalex.org/I36399199"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009604048","display_name":"Chunhua Weng","orcid":"https://orcid.org/0000-0002-9624-0214"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chunhua Weng","raw_affiliation_strings":["Department of Biomedical Informatics, Columbia University, New York, New York, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University, New York, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100633735"],"corresponding_institution_ids":["https://openalex.org/I36399199"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":0.5015,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.62893923,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"27","issue":"9","first_page":"1364","last_page":"1373"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6452668309211731},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5946977138519287},{"id":"https://openalex.org/keywords/ellipse","display_name":"Ellipse","score":0.593174159526825},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.5726838111877441},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.5240209698677063},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5202030539512634},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5173458456993103},{"id":"https://openalex.org/keywords/coreference","display_name":"Coreference","score":0.48936718702316284},{"id":"https://openalex.org/keywords/ellipsis","display_name":"Ellipsis (linguistics)","score":0.4612947702407837},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4516848027706146},{"id":"https://openalex.org/keywords/cohesion","display_name":"Cohesion (chemistry)","score":0.4323241114616394},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3346521258354187},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.17438983917236328},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09959566593170166},{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.09597432613372803}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6452668309211731},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5946977138519287},{"id":"https://openalex.org/C74261601","wikidata":"https://www.wikidata.org/wiki/Q40112","display_name":"Ellipse","level":2,"score":0.593174159526825},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.5726838111877441},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.5240209698677063},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5202030539512634},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5173458456993103},{"id":"https://openalex.org/C28076734","wikidata":"https://www.wikidata.org/wiki/Q63087","display_name":"Coreference","level":3,"score":0.48936718702316284},{"id":"https://openalex.org/C2780881102","wikidata":"https://www.wikidata.org/wiki/Q189743","display_name":"Ellipsis (linguistics)","level":2,"score":0.4612947702407837},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4516848027706146},{"id":"https://openalex.org/C104054115","wikidata":"https://www.wikidata.org/wiki/Q216828","display_name":"Cohesion (chemistry)","level":2,"score":0.4323241114616394},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3346521258354187},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.17438983917236328},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09959566593170166},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.09597432613372803},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D008037","descriptor_name":"Linguistics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008037","descriptor_name":"Linguistics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008037","descriptor_name":"Linguistics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/jamia/ocaa109","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jamia/ocaa109","pdf_url":null,"source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:32719840","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32719840","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7647336","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7647336","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:7647336","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7647336","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.7400000095367432}],"awards":[{"id":"https://openalex.org/G3160330032","display_name":null,"funder_award_id":"61941113","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6877234028","display_name":null,"funder_award_id":"61170035","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W116586739","https://openalex.org/W1550258693","https://openalex.org/W1561549716","https://openalex.org/W1995082001","https://openalex.org/W2146089916","https://openalex.org/W2153858739","https://openalex.org/W2163107094","https://openalex.org/W2168041406","https://openalex.org/W2169099542","https://openalex.org/W2231954028","https://openalex.org/W2286261512","https://openalex.org/W2612374874","https://openalex.org/W2729011435","https://openalex.org/W2769851464","https://openalex.org/W2807498782","https://openalex.org/W4300672009","https://openalex.org/W6604740292","https://openalex.org/W6632766574"],"related_works":["https://openalex.org/W2139373276","https://openalex.org/W2227889443","https://openalex.org/W1509033667","https://openalex.org/W4385749782","https://openalex.org/W3167631113","https://openalex.org/W2145164276","https://openalex.org/W2004630825","https://openalex.org/W2324061017","https://openalex.org/W2740479527","https://openalex.org/W4235279624"],"abstract_inverted_index":{"RECEEM":[0],"improves":[1],"concept":[2],"normalization":[3],"for":[4,29],"medical":[5],"coordinated":[6],"elliptical":[7],"expressions":[8],"in":[9,33],"a":[10],"variety":[11],"of":[12,24],"biomedical":[13],"corpora.":[14],"It":[15],"outperformed":[16],"existing":[17],"methods":[18],"and":[19],"significantly":[20],"enhanced":[21],"the":[22,34],"performance":[23],"2":[25],"notable":[26],"NLP":[27],"systems":[28],"mapping":[30],"coordination":[31],"ellipses":[32],"evaluation.":[35],"The":[36],"algorithm":[37],"is":[38],"open":[39],"sourced":[40],"online":[41],"(https://github.com/chiyuan1126/RECEEM).":[42]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}