{"id":"https://openalex.org/W3045942044","doi":"https://doi.org/10.1093/jamia/ocaa080","title":"Unified Medical Language System resources improve sieve-based generation and Bidirectional Encoder Representations from Transformers (BERT)\u2013based ranking for concept normalization","display_name":"Unified Medical Language System resources improve sieve-based generation and Bidirectional Encoder Representations from Transformers (BERT)\u2013based ranking for concept normalization","publication_year":2020,"publication_date":"2020-04-28","ids":{"openalex":"https://openalex.org/W3045942044","doi":"https://doi.org/10.1093/jamia/ocaa080","mag":"3045942044","pmid":"https://pubmed.ncbi.nlm.nih.gov/32719838"},"language":"en","primary_location":{"id":"doi:10.1093/jamia/ocaa080","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocaa080","pdf_url":"https://academic.oup.com/jamia/article-pdf/27/10/1510/34152904/ocaa080.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/27/10/1510/34152904/ocaa080.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064023395","display_name":"Dongfang Xu","orcid":"https://orcid.org/0000-0003-0828-1102"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Dongfang Xu","raw_affiliation_strings":["School of Information, University of Arizona, Tucson, Arizona, USA"],"raw_orcid":"https://orcid.org/0000-0003-0828-1102","affiliations":[{"raw_affiliation_string":"School of Information, University of Arizona, Tucson, Arizona, USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035749806","display_name":"Manoj Gopale","orcid":null},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Manoj Gopale","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Arizona, Tucson, Arizona, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Arizona, Tucson, Arizona, USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022819912","display_name":"Jiacheng Zhang","orcid":"https://orcid.org/0000-0001-7267-5232"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiacheng Zhang","raw_affiliation_strings":["Department of Computer Science, University of Arizona, Tucson, Arizona, USA"],"raw_orcid":"https://orcid.org/0000-0001-7267-5232","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Arizona, Tucson, Arizona, USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013714671","display_name":"Kris Brown","orcid":null},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kris Brown","raw_affiliation_strings":["National Center for Computational Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Computational Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014317244","display_name":"Edmon Begoli","orcid":"https://orcid.org/0000-0002-2173-3663"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Edmon Begoli","raw_affiliation_strings":["National Center for Computational Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Computational Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068978543","display_name":"Steven Bethard","orcid":"https://orcid.org/0000-0001-9560-6491"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven Bethard","raw_affiliation_strings":["School of Information, University of Arizona, Tucson, Arizona, USA"],"raw_orcid":"https://orcid.org/0000-0001-9560-6491","affiliations":[{"raw_affiliation_string":"School of Information, University of Arizona, Tucson, Arizona, USA","institution_ids":["https://openalex.org/I138006243"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5064023395"],"corresponding_institution_ids":["https://openalex.org/I138006243"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":2.4127,"has_fulltext":true,"cited_by_count":30,"citation_normalized_percentile":{"value":0.90981435,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"27","issue":"10","first_page":"1510","last_page":"1519"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.5776000022888184,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.5776000022888184,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.24250000715255737,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.08579999953508377,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.9447294473648071},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8335315585136414},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.6419834494590759},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6096787452697754},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5810867547988892},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4898523986339569},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.43836793303489685}],"concepts":[{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.9447294473648071},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8335315585136414},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.6419834494590759},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6096787452697754},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5810867547988892},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4898523986339569},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.43836793303489685},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062245","descriptor_name":"RxNorm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062245","descriptor_name":"RxNorm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062245","descriptor_name":"RxNorm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062245","descriptor_name":"RxNorm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062245","descriptor_name":"RxNorm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062245","descriptor_name":"RxNorm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063886","descriptor_name":"Patient Discharge Summaries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063886","descriptor_name":"Patient Discharge Summaries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063886","descriptor_name":"Patient Discharge Summaries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063886","descriptor_name":"Patient Discharge Summaries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063886","descriptor_name":"Patient Discharge Summaries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063886","descriptor_name":"Patient Discharge Summaries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/jamia/ocaa080","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocaa080","pdf_url":"https://academic.oup.com/jamia/article-pdf/27/10/1510/34152904/ocaa080.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:32719838","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32719838","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:osti.gov:1785703","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1785703","pdf_url":"https://www.osti.gov/servlets/purl/1785703","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:1798619","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1798619","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7566510","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7566510","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/jamia/ocaa080","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamia/ocaa080","pdf_url":"https://academic.oup.com/jamia/article-pdf/27/10/1510/34152904/ocaa080.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.5400000214576721}],"awards":[{"id":"https://openalex.org/G1645119126","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1719536385","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2007241537","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F290809990","funder_display_name":"Language Literacy and Culture, University of Maryland, Baltimore County"},{"id":"https://openalex.org/G2136782543","display_name":null,"funder_award_id":"R01LM012918","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2584197162","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3049477530","display_name":null,"funder_award_id":"Contract No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4957472368","display_name":null,"funder_award_id":". DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5726405315","display_name":null,"funder_award_id":"DE-AC05","funder_id":"https://openalex.org/F4320306250","funder_display_name":"Battelle"},{"id":"https://openalex.org/G6011010749","display_name":"MRI: Acquisition of a Graphics Processor Unit-Accelerated High Performance Computer for Astrophysics, Computer Science, and Broad Numerical Research at the University of Arizona","funder_award_id":"1228509","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6129992089","display_name":null,"funder_award_id":"DE-AC05-","funder_id":"https://openalex.org/F4320316892","funder_display_name":"UT-Battelle"},{"id":"https://openalex.org/G6495930337","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6864165199","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306250","funder_display_name":"Battelle"},{"id":"https://openalex.org/G6911681599","display_name":null,"funder_award_id":"No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7769062580","display_name":null,"funder_award_id":"No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320316892","funder_display_name":"UT-Battelle"},{"id":"https://openalex.org/G7995982022","display_name":null,"funder_award_id":"DE-AC05","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8141693315","display_name":null,"funder_award_id":"R01 LM012918","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G8813984943","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320316892","funder_display_name":"UT-Battelle"},{"id":"https://openalex.org/G8906985441","display_name":null,"funder_award_id":"00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8943143067","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320316892","funder_display_name":"UT-Battelle"}],"funders":[{"id":"https://openalex.org/F290809990","display_name":"Language Literacy and Culture, University of Maryland, Baltimore County","ror":null},{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306250","display_name":"Battelle","ror":"https://ror.org/01h5tnr73"},{"id":"https://openalex.org/F4320316892","display_name":"UT-Battelle","ror":"https://ror.org/04nza6677"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3045942044.pdf","grobid_xml":"https://content.openalex.org/works/W3045942044.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W997324903","https://openalex.org/W1530032857","https://openalex.org/W1550258693","https://openalex.org/W1968761064","https://openalex.org/W1993068388","https://openalex.org/W2061478295","https://openalex.org/W2096252540","https://openalex.org/W2108862644","https://openalex.org/W2142016317","https://openalex.org/W2146089916","https://openalex.org/W2159583324","https://openalex.org/W2168041406","https://openalex.org/W2212494754","https://openalex.org/W2259159222","https://openalex.org/W2412122516","https://openalex.org/W2515403501","https://openalex.org/W2537052583","https://openalex.org/W2583842374","https://openalex.org/W2763990719","https://openalex.org/W2782318039","https://openalex.org/W2786015986","https://openalex.org/W2808598571","https://openalex.org/W2808838104","https://openalex.org/W2889167733","https://openalex.org/W2910326837","https://openalex.org/W2911489562","https://openalex.org/W2915128229","https://openalex.org/W2917968119","https://openalex.org/W2955483668","https://openalex.org/W2963587816","https://openalex.org/W2972483465","https://openalex.org/W2995723181","https://openalex.org/W3027260829","https://openalex.org/W3030645549","https://openalex.org/W6632766574","https://openalex.org/W6748162558","https://openalex.org/W6753963410","https://openalex.org/W6771424112","https://openalex.org/W6777507432"],"related_works":["https://openalex.org/W79619734","https://openalex.org/W2010487328","https://openalex.org/W2340589664","https://openalex.org/W2003127701","https://openalex.org/W2563868050","https://openalex.org/W1822792362","https://openalex.org/W1507779355","https://openalex.org/W2575181596","https://openalex.org/W2138789621","https://openalex.org/W2069107439"],"abstract_inverted_index":{"OBJECTIVE:":[0],"Concept":[1,49],"normalization,":[2],"the":[3,39,78,109,120,139,142,150,154,159,187,199,212],"task":[4,56],"of":[5,95,136,153,178,186],"linking":[6],"phrases":[7,250],"in":[8,12,38,138,205,251],"text":[9,252],"to":[10,91,118,164,168,247,253],"concepts":[11,97,218],"an":[13],"ontology,":[14],"is":[15],"useful":[16],"for":[17,98,227],"many":[18],"downstream":[19],"tasks":[20],"including":[21],"relation":[22],"extraction,":[23],"information":[24],"retrieval,":[25],"etc.":[26],"We":[27,67,101],"present":[28],"a":[29,70,93,104,128,242],"generate-and-rank":[30,132,225],"concept":[31,60,208,229],"normalization":[32,230],"system":[33,72,133],"based":[34,107],"on":[35,108,217],"our":[36,179],"participation":[37],"2019":[40],"National":[41],"NLP":[42],"Clinical":[43],"Challenges":[44],"Shared":[45],"Task":[46],"Track":[47],"3":[48],"Normalization.":[50],"MATERIALS":[51],"AND":[52],"METHODS:":[53],"The":[54],"shared":[55],"provided":[57],"13":[58],"609":[59],"mentions":[61],"drawn":[62],"from":[63,114,174],"100":[64],"discharge":[65],"summaries.":[66],"first":[68],"design":[69,103],"sieve-based":[71],"that":[73,190,198,211],"uses":[74],"Lucene":[75],"indices":[76],"over":[77],"training":[79,170],"data,":[80],"Unified":[81],"Medical":[82],"Language":[83],"System":[84],"(UMLS)":[85],"preferred":[86,193,236],"terms,":[87],"and":[88,149,176,210,238],"UMLS":[89,124,175,180,192,200,228,233,254],"synonyms":[90],"generate":[92],"list":[94],"possible":[96],"each":[99],"mention.":[100],"then":[102],"listwise":[105],"classifier":[106],"BERT":[110],"(Bidirectional":[111],"Encoder":[112],"Representations":[113],"Transformers)":[115],"neural":[116,243],"network":[117],"rank":[119],"candidate":[121,143],"concepts,":[122],"integrating":[123],"semantic":[125,181,201,239],"types":[126,240],"through":[127],"regularizer.":[129,183],"RESULTS:":[130],"Our":[131,224],"was":[134,162],"third":[135],"33":[137],"competition,":[140],"outperforming":[141],"generator":[144],"alone":[145],"(81.66%":[146],"vs":[147],"79.44%)":[148],"previous":[151],"state":[152],"art":[155],"(76.35%).":[156],"During":[157],"postevaluation,":[158],"model's":[160],"accuracy":[161],"increased":[163],"83.56%":[165],"via":[166],"improvements":[167],"how":[169],"data":[171],"are":[172],"generated":[173],"incorporation":[177],"type":[182,202],"DISCUSSION:":[184],"Analysis":[185],"model":[188,213,246],"shows":[189],"prioritizing":[191],"terms":[194,237],"yields":[195],"better":[196,207],"performance,":[197],"regularizer":[203],"results":[204],"qualitatively":[206],"predictions,":[209],"performs":[214],"well":[215],"even":[216],"not":[219],"seen":[220],"during":[221],"training.":[222],"CONCLUSIONS:":[223],"framework":[226],"integrates":[231],"key":[232],"features":[234],"like":[235],"with":[241],"network-based":[244],"ranking":[245],"accurately":[248],"link":[249],"concepts.":[255]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":2}],"updated_date":"2026-07-18T07:39:51.176621","created_date":"2025-10-10T00:00:00"}
