{"id":"https://openalex.org/W7117323130","doi":"https://doi.org/10.1093/gpbjnl/qzaf128","title":"HyperSTAR: Unveiling Tissue Structure and Tumor Microenvironment from Spatial Omics by Hypergraph Learning","display_name":"HyperSTAR: Unveiling Tissue Structure and Tumor Microenvironment from Spatial Omics by Hypergraph Learning","publication_year":2025,"publication_date":"2025-12-26","ids":{"openalex":"https://openalex.org/W7117323130","doi":"https://doi.org/10.1093/gpbjnl/qzaf128","pmid":"https://pubmed.ncbi.nlm.nih.gov/41453080"},"language":"en","primary_location":{"id":"doi:10.1093/gpbjnl/qzaf128","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzaf128","pdf_url":null,"source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/gpbjnl/qzaf128","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103239435","display_name":"Yi Liao","orcid":"https://orcid.org/0009-0007-4577-8501"},"institutions":[{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Liao","raw_affiliation_strings":["School of Computer Science and Engineering, South China University of Technology, Guangzhou 510006, China"],"raw_orcid":"https://orcid.org/0009-0007-4577-8501","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, South China University of Technology, Guangzhou 510006, China","institution_ids":["https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Chong Zhang","orcid":"https://orcid.org/0009-0006-3719-4592"},"institutions":[{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chong Zhang","raw_affiliation_strings":["School of Computer Science and Engineering, South China University of Technology, Guangzhou 510006, China"],"raw_orcid":"https://orcid.org/0009-0006-3719-4592","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, South China University of Technology, Guangzhou 510006, China","institution_ids":["https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5121327551","display_name":"Zhikang Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I60733029","display_name":"Monash Institute of Medical Research","ror":"https://ror.org/05p96ba03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I60733029"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Zhikang Wang","raw_affiliation_strings":["Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Melbourne VIC 3800, Australia","Monash AI Institute, Monash University, Melbourne VIC 3800, Australia"],"raw_orcid":"https://orcid.org/0000-0001-9587-1965","affiliations":[{"raw_affiliation_string":"Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Melbourne VIC 3800, Australia","institution_ids":["https://openalex.org/I2799424032"]},{"raw_affiliation_string":"Monash AI Institute, Monash University, Melbourne VIC 3800, Australia","institution_ids":["https://openalex.org/I56590836","https://openalex.org/I60733029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5121340209","display_name":"Fei Qi","orcid":null},"institutions":[{"id":"https://openalex.org/I4210095439","display_name":"Guizhou Minzu University","ror":"https://ror.org/00qm4t918","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210095439"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fei Qi","raw_affiliation_strings":["School of Data Science and Information Engineering, Guizhou Minzu University, Guiyang 550025, China"],"raw_orcid":"https://orcid.org/0000-0001-7128-7764","affiliations":[{"raw_affiliation_string":"School of Data Science and Information Engineering, Guizhou Minzu University, Guiyang 550025, China","institution_ids":["https://openalex.org/I4210095439"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001203027","display_name":"Weitian Huang","orcid":"https://orcid.org/0000-0001-8848-4801"},"institutions":[{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weitian Huang","raw_affiliation_strings":["School of Future Technology, South China University of Technology, Guangzhou 511442, China"],"raw_orcid":"https://orcid.org/0000-0001-8848-4801","affiliations":[{"raw_affiliation_string":"School of Future Technology, South China University of Technology, Guangzhou 511442, China","institution_ids":["https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101355788","display_name":"Shangyan Cai","orcid":null},"institutions":[{"id":"https://openalex.org/I12615008","display_name":"Beijing Normal-Hong Kong Baptist University","ror":"https://ror.org/04snvc712","country_code":"CN","type":"education","lineage":["https://openalex.org/I12615008"]},{"id":"https://openalex.org/I141568987","display_name":"Hong Kong Baptist University","ror":"https://ror.org/0145fw131","country_code":"HK","type":"education","lineage":["https://openalex.org/I141568987"]},{"id":"https://openalex.org/I25254941","display_name":"Beijing Normal University","ror":"https://ror.org/022k4wk35","country_code":"CN","type":"education","lineage":["https://openalex.org/I25254941"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Shangyan Cai","raw_affiliation_strings":["Faculty of Science and Technology, Beijing Normal University-Hong Kong Baptist University United International College, Zhuhai 519087, China"],"raw_orcid":"https://orcid.org/0009-0000-2444-6718","affiliations":[{"raw_affiliation_string":"Faculty of Science and Technology, Beijing Normal University-Hong Kong Baptist University United International College, Zhuhai 519087, China","institution_ids":["https://openalex.org/I12615008","https://openalex.org/I141568987","https://openalex.org/I25254941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100680717","display_name":"Junyu Li","orcid":"https://orcid.org/0000-0002-2472-8958"},"institutions":[{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junyu Li","raw_affiliation_strings":["School of Future Technology, South China University of Technology, Guangzhou 511442, China"],"raw_orcid":"https://orcid.org/0000-0002-2472-8958","affiliations":[{"raw_affiliation_string":"School of Future Technology, South China University of Technology, Guangzhou 511442, China","institution_ids":["https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101521068","display_name":"Jiazhou Chen","orcid":"https://orcid.org/0000-0001-7171-9547"},"institutions":[{"id":"https://openalex.org/I139024713","display_name":"Guangdong University of Technology","ror":"https://ror.org/04azbjn80","country_code":"CN","type":"education","lineage":["https://openalex.org/I139024713"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiazhou Chen","raw_affiliation_strings":["School of Computer Science, Guangdong University of Technology, Guangzhou 510006, China"],"raw_orcid":"https://orcid.org/0000-0001-7171-9547","affiliations":[{"raw_affiliation_string":"School of Computer Science, Guangdong University of Technology, Guangzhou 510006, China","institution_ids":["https://openalex.org/I139024713"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5121332460","display_name":"Robin B Gasser","orcid":null},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Robin B Gasser","raw_affiliation_strings":["Department of Veterinary Biosciences, Melbourne Veterinary School, Faculty of Science, The University of Melbourne , Parkville, VIC 3010,"],"raw_orcid":"https://orcid.org/0000-0002-4423-1690","affiliations":[{"raw_affiliation_string":"Department of Veterinary Biosciences, Melbourne Veterinary School, Faculty of Science, The University of Melbourne , Parkville, VIC 3010,","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100311009","display_name":"Zhiyuan Yuan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210127380","display_name":"Pudong Medical Center","ror":"https://ror.org/02nptez24","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210127380"]},{"id":"https://openalex.org/I4210164150","display_name":"Shanghai Center for Brain Science and Brain-Inspired Technology","ror":"https://ror.org/0551a0y31","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210164150"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhiyuan Yuan","raw_affiliation_strings":["Center for Medical Research and Innovation, Shanghai Pudong Hospital, Fudan University Pudong Medical Center, Fudan University, Shanghai 201399, China","Institute of Science and Technology for Brain-Inspired Intelligence, MOE Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, MOE Frontiers Center for Brain Science, Fudan University, Shanghai 200433, China"],"raw_orcid":"https://orcid.org/0000-0002-9367-4236","affiliations":[{"raw_affiliation_string":"Center for Medical Research and Innovation, Shanghai Pudong Hospital, Fudan University Pudong Medical Center, Fudan University, Shanghai 201399, China","institution_ids":["https://openalex.org/I4210127380"]},{"raw_affiliation_string":"Institute of Science and Technology for Brain-Inspired Intelligence, MOE Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, MOE Frontiers Center for Brain Science, Fudan University, Shanghai 200433, China","institution_ids":["https://openalex.org/I4210164150"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5121342084","display_name":"Jiangning Song","orcid":null},"institutions":[{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I60733029","display_name":"Monash Institute of Medical Research","ror":"https://ror.org/05p96ba03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I60733029"]}],"countries":["AU","US"],"is_corresponding":true,"raw_author_name":"Jiangning Song","raw_affiliation_strings":["Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Melbourne VIC 3800, Australia","Monash AI Institute, Monash University, Melbourne VIC 3800, Australia"],"raw_orcid":"https://orcid.org/0000-0001-8031-9086","affiliations":[{"raw_affiliation_string":"Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Melbourne VIC 3800, Australia","institution_ids":["https://openalex.org/I2799424032"]},{"raw_affiliation_string":"Monash AI Institute, Monash University, Melbourne VIC 3800, Australia","institution_ids":["https://openalex.org/I56590836","https://openalex.org/I60733029"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5121349039","display_name":"Hongmin Cai","orcid":null},"institutions":[{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hongmin Cai","raw_affiliation_strings":["School of Computer Science and Engineering, South China University of Technology, Guangzhou 510006, China","School of Future Technology, South China University of Technology, Guangzhou 511442, China"],"raw_orcid":"https://orcid.org/0000-0002-2747-7234","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, South China University of Technology, Guangzhou 510006, China","institution_ids":["https://openalex.org/I90610280"]},{"raw_affiliation_string":"School of Future Technology, South China University of Technology, Guangzhou 511442, China","institution_ids":["https://openalex.org/I90610280"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5100311009","https://openalex.org/A5121342084","https://openalex.org/A5121349039"],"corresponding_institution_ids":["https://openalex.org/I2799424032","https://openalex.org/I4210127380","https://openalex.org/I4210164150","https://openalex.org/I56590836","https://openalex.org/I60733029","https://openalex.org/I90610280"],"apc_list":{"value":3650,"currency":"USD","value_usd":3650},"apc_paid":{"value":3650,"currency":"USD","value_usd":3650},"fwci":0.8148,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.74954052,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"24","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9466999769210815,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9466999769210815,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.01769999973475933,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0038999998942017555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hypergraph","display_name":"Hypergraph","score":0.6478000283241272},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.4968000054359436},{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.4300999939441681},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.4189999997615814},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.3815000057220459},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.3634999990463257},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.35910001397132874}],"concepts":[{"id":"https://openalex.org/C2781221856","wikidata":"https://www.wikidata.org/wiki/Q840247","display_name":"Hypergraph","level":2,"score":0.6478000283241272},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6223999857902527},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.4968000054359436},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.4300999939441681},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4291999936103821},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.4189999997615814},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3855000138282776},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.3815000057220459},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3634999990463257},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.35910001397132874},{"id":"https://openalex.org/C158709400","wikidata":"https://www.wikidata.org/wiki/Q3578586","display_name":"Spatial ecology","level":2,"score":0.35190001130104065},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34200000762939453},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.31949999928474426},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.31520000100135803},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3050999939441681},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29260000586509705},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.2879999876022339},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.2752000093460083},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.2644999921321869},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.25189998745918274}],"mesh":[{"descriptor_ui":"D000098415","descriptor_name":"Convolutional Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098415","descriptor_name":"Convolutional Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098415","descriptor_name":"Convolutional Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000099285","descriptor_name":"Spatial Transcriptomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000099285","descriptor_name":"Spatial Transcriptomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000099285","descriptor_name":"Spatial Transcriptomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/gpbjnl/qzaf128","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzaf128","pdf_url":null,"source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41453080","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41453080","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, proteomics & bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13317993","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13317993/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Genomics Proteomics Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/gpbjnl/qzaf128","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzaf128","pdf_url":null,"source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4280663728713989,"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12"}],"awards":[{"id":"https://openalex.org/G357971821","display_name":null,"funder_award_id":"62325204","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7317512889","display_name":null,"funder_award_id":"2022ZD0117700","funder_id":"https://openalex.org/F4320329860","funder_display_name":"National Science and Technology Major Project"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320329860","display_name":"National Science and Technology Major Project","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1972618510","https://openalex.org/W2029523792","https://openalex.org/W2042789810","https://openalex.org/W2058087601","https://openalex.org/W2103868202","https://openalex.org/W2118526609","https://openalex.org/W2126537932","https://openalex.org/W2129757655","https://openalex.org/W2131929474","https://openalex.org/W2149573463","https://openalex.org/W2161160262","https://openalex.org/W2396849069","https://openalex.org/W2519132385","https://openalex.org/W2800392236","https://openalex.org/W2809368942","https://openalex.org/W2892880750","https://openalex.org/W2911122280","https://openalex.org/W2923300855","https://openalex.org/W2950372712","https://openalex.org/W2952383043","https://openalex.org/W2998127407","https://openalex.org/W3108118546","https://openalex.org/W3118987147","https://openalex.org/W3120427588","https://openalex.org/W3126958162","https://openalex.org/W3164692211","https://openalex.org/W3165120573","https://openalex.org/W3190202966","https://openalex.org/W3191029526","https://openalex.org/W3203364159","https://openalex.org/W4220765701","https://openalex.org/W4226192560","https://openalex.org/W4282926996","https://openalex.org/W4283704002","https://openalex.org/W4285388882","https://openalex.org/W4306406844","https://openalex.org/W4385515928","https://openalex.org/W4388997570"],"related_works":[],"abstract_inverted_index":{"Spatial":[0],"omics":[1,35,160,198],"technologies":[2,39],"have":[3],"revolutionized":[4],"life":[5,235],"sciences":[6],"by":[7,70],"enabling":[8],"the":[9,30,90,111,117],"simultaneous":[10],"acquisition":[11],"of":[12,32,113,187],"biomolecular":[13],"and":[14,26,149,163,184,212,240],"spatial":[15,18,34,47,65,96,159,173,197,207],"information.":[16],"Identifying":[17],"patterns":[19,208],"is":[20,86,106,245],"crucial":[21],"for":[22,204,231],"understanding":[23],"organ":[24],"development":[25],"tumor":[27],"microenvironments.":[28],"However,":[29],"emergence":[31],"diverse":[33,158],"resolutions":[36,69,211],"in":[37,139,175,196,234,238],"these":[38],"has":[40],"made":[41],"it":[42,227],"challenging":[43],"to":[44,62,88,93,108,120,166,217],"accurately":[45,94],"characterize":[46],"domains":[48,66],"at":[49,247],"finer":[50],"resolutions.":[51],"To":[52],"address":[53],"this,":[54],"we":[55],"propose":[56],"HyperSTAR,":[57],"a":[58,80,100,193,201],"hypergraph-based":[59],"method":[60,170],"designed":[61,107],"precisely":[63],"identify":[64],"across":[67,209],"varying":[68,210],"leveraging":[71],"higher-order":[72,123,220],"relationships":[73,124,221],"among":[74,222],"spatially":[75,126,151,223],"adjacent":[76],"tissue":[77,144],"programs.":[78],"Specifically,":[79],"gene":[81,153],"expression-guided":[82],"hyperedge":[83],"decomposition":[84],"module":[85],"introduced":[87],"refine":[89],"hypergraph":[91,101],"structure":[92],"delineate":[95],"domain":[97],"boundaries.":[98],"Additionally,":[99],"attention":[102],"convolutional":[103],"neural":[104,136],"network":[105,137],"adaptively":[109],"learn":[110],"importance":[112],"each":[114],"hyperedge,":[115],"enhancing":[116],"model's":[118],"ability":[119,216],"capture":[121,218],"complex":[122,206],"within":[125],"neighboring":[127,224],"multi-spots":[128],"and/or":[129],"single":[130],"cells.":[131],"HyperSTAR":[132,191],"outperforms":[133],"existing":[134],"graph":[135],"models":[138],"tasks":[140],"such":[141],"as":[142],"uncovering":[143],"substructures,":[145],"inferring":[146],"spatiotemporal":[147],"patterns,":[148],"denoising":[150],"resolved":[152],"expression.":[154],"It":[155],"effectively":[156],"handles":[157],"data":[161,213],"types":[162],"scales":[164],"seamlessly":[165],"large":[167],"datasets.":[168],"The":[169,243],"successfully":[171],"reveals":[172],"heterogeneity":[174],"breast":[176],"cancer":[177,239],"sections,":[178],"with":[179],"findings":[180],"validated":[181],"through":[182],"functional":[183],"survival":[185],"analyses":[186],"independent":[188],"clinical":[189],"data.":[190],"represents":[192],"significant":[194],"advancement":[195],"analysis,":[199],"representing":[200],"robust":[202],"tool":[203,230],"exploring":[205],"types.":[214],"Its":[215],"intricate":[219],"spots/cells":[225],"makes":[226],"an":[228],"invaluable":[229],"advancing":[232],"research":[233],"sciences,":[236],"particularly":[237],"developmental":[241],"biology.":[242],"toolbox":[244],"available":[246],"https://github.com/Ringoio/HyperSTAR.":[248]},"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-12-26T00:00:00"}
