{"id":"https://openalex.org/W4414471726","doi":"https://doi.org/10.1093/gpbjnl/qzaf085","title":"DisConST: Distribution-aware Contrastive Learning for Spatial Domain Identification","display_name":"DisConST: Distribution-aware Contrastive Learning for Spatial Domain Identification","publication_year":2025,"publication_date":"2025-09-24","ids":{"openalex":"https://openalex.org/W4414471726","doi":"https://doi.org/10.1093/gpbjnl/qzaf085","pmid":"https://pubmed.ncbi.nlm.nih.gov/40990806"},"language":"en","primary_location":{"id":"doi:10.1093/gpbjnl/qzaf085","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzaf085","pdf_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzaf085/64372302/qzaf085.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzaf085/64372302/qzaf085.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5116645681","display_name":"Peimeng Zhen","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peimeng Zhen","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi\u2019an 710072,","School of Computer Science, Northwestern Polytechnical University, Xi\u2019an 710072,","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi'an 710072, China"],"raw_orcid":"https://orcid.org/0009-0003-5504-6321","affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi\u2019an 710072,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an 710072,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi'an 710072, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109834190","display_name":"Xiaofeng Wang","orcid":"https://orcid.org/0000-0001-6259-7971"},"institutions":[{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaofeng Wang","raw_affiliation_strings":["Department of General Surgery, The Affiliated Hospital of Northwest University, Xi\u2019an No. 3 Hospital, Xi\u2019an 710018,","Department of General Surgery, The Affiliated Hospital of Northwest University, Xi'an No. 3 Hospital, Xi'an 710018, China"],"raw_orcid":"https://orcid.org/0009-0003-9157-2898","affiliations":[{"raw_affiliation_string":"Department of General Surgery, The Affiliated Hospital of Northwest University, Xi\u2019an No. 3 Hospital, Xi\u2019an 710018,","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Department of General Surgery, The Affiliated Hospital of Northwest University, Xi'an No. 3 Hospital, Xi'an 710018, China","institution_ids":["https://openalex.org/I37802460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110194077","display_name":"Han Shu","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Han Shu","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi\u2019an 710072,","School of Computer Science, Northwestern Polytechnical University, Xi\u2019an 710072,","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi'an 710072, China"],"raw_orcid":"https://orcid.org/0009-0000-5854-0526","affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi\u2019an 710072,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an 710072,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi'an 710072, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018634374","display_name":"Jialu Hu","orcid":"https://orcid.org/0000-0002-3351-8020"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jialu Hu","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi\u2019an 710072,","School of Computer Science, Northwestern Polytechnical University, Xi\u2019an 710072,","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi'an 710072, China"],"raw_orcid":"https://orcid.org/0000-0002-3351-8020","affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi\u2019an 710072,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an 710072,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi'an 710072, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101577163","display_name":"Yongtian Wang","orcid":"https://orcid.org/0000-0003-2766-3106"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongtian Wang","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi\u2019an 710072,","School of Computer Science, Northwestern Polytechnical University, Xi\u2019an 710072,","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi'an 710072, China"],"raw_orcid":"https://orcid.org/0000-0003-2766-3106","affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi\u2019an 710072,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an 710072,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi'an 710072, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084343474","display_name":"Jiajie Peng","orcid":"https://orcid.org/0000-0002-3857-7927"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiajie Peng","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi\u2019an 710072,","School of Computer Science, Northwestern Polytechnical University, Xi\u2019an 710072,","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi'an 710072, China"],"raw_orcid":"https://orcid.org/0000-0002-3857-7927","affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi\u2019an 710072,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an 710072,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi'an 710072, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073651359","display_name":"Xuequn Shang","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuequn Shang","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi\u2019an 710072,","School of Computer Science, Northwestern Polytechnical University, Xi\u2019an 710072,","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi'an 710072, China"],"raw_orcid":"https://orcid.org/0000-0002-7249-8210","affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi\u2019an 710072,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an 710072,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi'an 710072, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100394829","display_name":"Jing Chen","orcid":"https://orcid.org/0000-0001-8305-9291"},"institutions":[{"id":"https://openalex.org/I110440473","display_name":"Xi'an University of Science and Technology","ror":"https://ror.org/046fkpt18","country_code":"CN","type":"education","lineage":["https://openalex.org/I110440473"]},{"id":"https://openalex.org/I4210115513","display_name":"Xi\u2019an University","ror":"https://ror.org/01zzmf129","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210115513"]},{"id":"https://openalex.org/I4210131919","display_name":"Xi'an University of Technology","ror":"https://ror.org/038avdt50","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210131919"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jing Chen","raw_affiliation_strings":["School of Computer Science and Engineering, Xi\u2019an University of Technology, Xi\u2019an 710048,","School of Computer Science and Engineering, Xi'an University of Technology, Xi'an 710048, China"],"raw_orcid":"https://orcid.org/0009-0004-0484-0602","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Xi\u2019an University of Technology, Xi\u2019an 710048,","institution_ids":["https://openalex.org/I110440473","https://openalex.org/I4210115513","https://openalex.org/I4210131919"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Xi'an University of Technology, Xi'an 710048, China","institution_ids":["https://openalex.org/I4210131919"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100453544","display_name":"Tao Wang","orcid":"https://orcid.org/0000-0002-5121-0599"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Tao Wang","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi\u2019an 710072,","School of Computer Science, Northwestern Polytechnical University, Xi\u2019an 710072,","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi'an 710072, China"],"raw_orcid":"https://orcid.org/0000-0002-5728-6463","affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi\u2019an 710072,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an 710072,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi'an 710072, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100394829","https://openalex.org/A5100453544"],"corresponding_institution_ids":["https://openalex.org/I110440473","https://openalex.org/I17145004","https://openalex.org/I4210115513","https://openalex.org/I4210131919","https://openalex.org/I890469752"],"apc_list":{"value":3650,"currency":"USD","value_usd":3650},"apc_paid":{"value":3650,"currency":"USD","value_usd":3650},"fwci":2.4443,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.89627176,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"24","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9697999954223633,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11307","display_name":"Domain Adaptation and Few-Shot Learning","score":0.9225000143051147,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.5698000192642212},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.503000020980835},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.4675000011920929},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.41609999537467957},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.39329999685287476},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.3783999979496002},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.37689998745918274}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7247999906539917},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5820000171661377},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.5698000192642212},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.503000020980835},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.4675000011920929},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.41609999537467957},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.39329999685287476},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.3783999979496002},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.37689998745918274},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3610000014305115},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.36070001125335693},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.33799999952316284},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.33739998936653137},{"id":"https://openalex.org/C2776145597","wikidata":"https://www.wikidata.org/wiki/Q25339462","display_name":"Dropout (neural networks)","level":2,"score":0.33390000462532043},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.28119999170303345},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.267300009727478},{"id":"https://openalex.org/C2779304628","wikidata":"https://www.wikidata.org/wiki/Q3503480","display_name":"Face (sociological concept)","level":2,"score":0.25200000405311584}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000099285","descriptor_name":"Spatial Transcriptomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000099285","descriptor_name":"Spatial Transcriptomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/gpbjnl/qzaf085","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzaf085","pdf_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzaf085/64372302/qzaf085.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40990806","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40990806","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, proteomics & bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13317986","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13317986/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Genomics Proteomics Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/gpbjnl/qzaf085","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzaf085","pdf_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzaf085/64372302/qzaf085.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3128057212","display_name":null,"funder_award_id":"62102319","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3543428437","display_name":null,"funder_award_id":"62402382","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4414471726.pdf"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W1987246402","https://openalex.org/W2003936872","https://openalex.org/W2034032177","https://openalex.org/W2058865073","https://openalex.org/W2108393758","https://openalex.org/W2115663787","https://openalex.org/W2123273050","https://openalex.org/W2125310307","https://openalex.org/W2125795987","https://openalex.org/W2160123902","https://openalex.org/W2253089030","https://openalex.org/W2471536144","https://openalex.org/W2519132385","https://openalex.org/W2599879124","https://openalex.org/W2800392236","https://openalex.org/W2902652978","https://openalex.org/W2906809706","https://openalex.org/W2911279074","https://openalex.org/W2937443931","https://openalex.org/W2937917790","https://openalex.org/W2949693884","https://openalex.org/W2950372712","https://openalex.org/W3001833132","https://openalex.org/W3003658914","https://openalex.org/W3021105102","https://openalex.org/W3036371598","https://openalex.org/W3044794181","https://openalex.org/W3082050089","https://openalex.org/W3108118546","https://openalex.org/W3126958162","https://openalex.org/W3165120573","https://openalex.org/W3196495189","https://openalex.org/W3208940117","https://openalex.org/W4200053790","https://openalex.org/W4205485577","https://openalex.org/W4220765701","https://openalex.org/W4220959614","https://openalex.org/W4226192560","https://openalex.org/W4229033508","https://openalex.org/W4249468678","https://openalex.org/W4290154117","https://openalex.org/W4294042823","https://openalex.org/W4309263635","https://openalex.org/W4322738920","https://openalex.org/W4381487215","https://openalex.org/W4388035146","https://openalex.org/W4388615936","https://openalex.org/W4388899046","https://openalex.org/W4388997570","https://openalex.org/W4390814844","https://openalex.org/W4390883205","https://openalex.org/W4392637466","https://openalex.org/W4400420052","https://openalex.org/W4403852249","https://openalex.org/W4404375915","https://openalex.org/W4404662707","https://openalex.org/W4406142139","https://openalex.org/W4408232499"],"related_works":[],"abstract_inverted_index":{"Spatial":[0,71],"transcriptomics":[1],"(ST)":[2],"is":[3,27,32,216],"a":[4,17,74],"cutting-edge":[5],"technology":[6],"that":[7,112,177],"provides":[8],"comprehensive":[9],"insights":[10],"into":[11],"gene":[12],"expression":[13],"(GE)":[14],"patterns":[15],"from":[16,163],"spatial":[18,28,58,82,103,142,181],"perspective.":[19],"A":[20],"key":[21,90],"research":[22,200],"focus":[23],"within":[24,85,149],"this":[25],"field":[26],"domain":[29,83,182],"identification,":[30],"which":[31],"essential":[33],"for":[34,70,214],"exploring":[35],"tissue":[36,202],"organization,":[37,203],"biological":[38],"development,":[39,205],"and":[40,98,104,146,161,170,206],"disease":[41,171],"mechanisms.":[42],"Although":[43],"methods":[44],"have":[45],"been":[46],"developed,":[47],"they":[48],"still":[49],"face":[50],"challenges":[51],"in":[52,61,167,198],"modeling":[53],"GE":[54,105],"information":[55],"together":[56],"with":[57,128],"locations,":[59],"resulting":[60],"suboptimal":[62],"accuracy.":[63],"Here,":[64],"we":[65],"introduce":[66],"Distribution-aware":[67],"Contrastive":[68],"Learning":[69],"Transcriptomics":[72],"(DisConST),":[73],"novel":[75],"deep":[76],"learning":[77,110],"method":[78],"designed":[79],"to":[80,132,186],"improve":[81],"detection":[84],"ST":[86,156],"datasets.":[87],"DisConST":[88,153,178,197,215],"addresses":[89],"challenges,":[91],"such":[92],"as":[93],"the":[94,99,116,122,194],"high":[95],"dropout":[96],"rates":[97],"complex":[100],"integration":[101],"of":[102,115,158,196],"data,":[106],"by":[107],"incorporating":[108],"contrastive":[109,130],"strategies":[111],"are":[113],"aware":[114],"underlying":[117],"data":[118],"distributions.":[119],"It":[120],"employs":[121],"zero-inflated":[123],"negative":[124],"binomial":[125],"distribution,":[126],"along":[127],"graph":[129],"learning,":[131],"generate":[133],"more":[134],"informative":[135],"latent":[136],"representations.":[137],"These":[138],"representations":[139],"efficiently":[140],"integrate":[141],"positions,":[143],"transcriptomic":[144],"profiles,":[145],"cell-type":[147],"proportions":[148],"spots.":[150],"We":[151],"validated":[152],"across":[154],"diverse":[155],"datasets":[157],"tissues,":[159],"organs,":[160],"embryos":[162],"various":[164],"sequencing":[165],"platforms":[166],"both":[168],"normal":[169],"states.":[172],"Our":[173],"results":[174],"consistently":[175],"demonstrate":[176],"achieves":[179],"superior":[180],"recognition":[183],"accuracy":[184],"compared":[185],"existing":[187],"state-of-the-art":[188],"methods.":[189],"Furthermore,":[190],"our":[191],"experiments":[192],"highlight":[193],"utility":[195],"advancing":[199],"on":[201],"embryonic":[204],"tumor":[207],"immune":[208],"microenvironment":[209],"dissection.":[210],"The":[211],"source":[212],"code":[213],"freely":[217],"available":[218],"at":[219],"https://github.com/Zhenpm/DisConST/.":[220]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":2}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
