{"id":"https://openalex.org/W4413112856","doi":"https://doi.org/10.1093/gpbjnl/qzaf066","title":"PreDigs: A Database of Context-specific Cell Type Markers and Precise Cell Subtypes for Digestive Cell Annotation","display_name":"PreDigs: A Database of Context-specific Cell Type Markers and Precise Cell Subtypes for Digestive Cell Annotation","publication_year":2025,"publication_date":"2025-08-01","ids":{"openalex":"https://openalex.org/W4413112856","doi":"https://doi.org/10.1093/gpbjnl/qzaf066","pmid":"https://pubmed.ncbi.nlm.nih.gov/40795159"},"language":"en","primary_location":{"id":"doi:10.1093/gpbjnl/qzaf066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzaf066","pdf_url":"https://academic.oup.com/gpb/article-pdf/23/4/qzaf066/63974855/qzaf066.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/gpb/article-pdf/23/4/qzaf066/63974855/qzaf066.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014192337","display_name":"Jiayue Meng","orcid":"https://orcid.org/0009-0003-5744-063X"},"institutions":[{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiayue Meng","raw_affiliation_strings":["National Genomics Data Center & Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences, Shanghai 200031, China","Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences National Genomics Data Center & Bio-Med Big Data Center, , Shanghai 200031,"],"raw_orcid":"https://orcid.org/0009-0003-5744-063X","affiliations":[{"raw_affiliation_string":"National Genomics Data Center & Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210096013"]},{"raw_affiliation_string":"Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences National Genomics Data Center & Bio-Med Big Data Center, , Shanghai 200031,","institution_ids":["https://openalex.org/I4210096013"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104126999","display_name":"Mengyao Han","orcid":"https://orcid.org/0000-0002-3751-3219"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I4210141816","display_name":"Central Hospital of Putuo District","ror":"https://ror.org/04nwd2p56","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210141816"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengyao Han","raw_affiliation_strings":["Putuo People's Hospital, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai 200092, China","Tongji University Putuo People\u2019s Hospital, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, , Shanghai 200092,"],"raw_orcid":"https://orcid.org/0000-0002-3751-3219","affiliations":[{"raw_affiliation_string":"Putuo People's Hospital, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai 200092, China","institution_ids":["https://openalex.org/I116953780"]},{"raw_affiliation_string":"Tongji University Putuo People\u2019s Hospital, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, , Shanghai 200092,","institution_ids":["https://openalex.org/I116953780","https://openalex.org/I4210141816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112547855","display_name":"Yuwei Huang","orcid":"https://orcid.org/0000-0003-1571-7103"},"institutions":[{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuwei Huang","raw_affiliation_strings":["National Genomics Data Center & Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences, Shanghai 200031, China","Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences National Genomics Data Center & Bio-Med Big Data Center, , Shanghai 200031,"],"raw_orcid":"https://orcid.org/0000-0003-1571-7103","affiliations":[{"raw_affiliation_string":"National Genomics Data Center & Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210096013"]},{"raw_affiliation_string":"Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences National Genomics Data Center & Bio-Med Big Data Center, , Shanghai 200031,","institution_ids":["https://openalex.org/I4210096013"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Liang Li","orcid":"https://orcid.org/0009-0007-2903-2347"},"institutions":[{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liang Li","raw_affiliation_strings":["National Genomics Data Center & Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences, Shanghai 200031, China","Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences National Genomics Data Center & Bio-Med Big Data Center, , Shanghai 200031,"],"raw_orcid":"https://orcid.org/0009-0007-2903-2347","affiliations":[{"raw_affiliation_string":"National Genomics Data Center & Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210096013"]},{"raw_affiliation_string":"Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences National Genomics Data Center & Bio-Med Big Data Center, , Shanghai 200031,","institution_ids":["https://openalex.org/I4210096013"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075807385","display_name":"Yuanhu Ju","orcid":null},"institutions":[{"id":"https://openalex.org/I4210146919","display_name":"Shanghai Industrial Technology Institute","ror":"https://ror.org/03j1pdd39","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210146919"]},{"id":"https://openalex.org/I4210150405","display_name":"Hongzhiwei Technology (China)","ror":"https://ror.org/04bapa014","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210150405"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuanhu Ju","raw_affiliation_strings":["Shanghai Southgene Technology Co., Ltd., Shanghai 201203, China","Shanghai Southgene Technology Co., Ltd, Shanghai 201203, China","Shanghai Southgene Technology Co ., Ltd, Shanghai 201203,"],"raw_orcid":"https://orcid.org/0009-0009-2812-0657","affiliations":[{"raw_affiliation_string":"Shanghai Southgene Technology Co., Ltd., Shanghai 201203, China","institution_ids":[]},{"raw_affiliation_string":"Shanghai Southgene Technology Co., Ltd, Shanghai 201203, China","institution_ids":["https://openalex.org/I4210150405"]},{"raw_affiliation_string":"Shanghai Southgene Technology Co ., Ltd, Shanghai 201203,","institution_ids":["https://openalex.org/I4210146919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112480254","display_name":"Daqing Lv","orcid":"https://orcid.org/0009-0003-5678-2486"},"institutions":[{"id":"https://openalex.org/I4210146919","display_name":"Shanghai Industrial Technology Institute","ror":"https://ror.org/03j1pdd39","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210146919"]},{"id":"https://openalex.org/I4210150405","display_name":"Hongzhiwei Technology (China)","ror":"https://ror.org/04bapa014","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210150405"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Daqing Lv","raw_affiliation_strings":["Shanghai Southgene Technology Co., Ltd., Shanghai 201203, China","Shanghai Southgene Technology Co ., Ltd, Shanghai 201203,","Shanghai Southgene Technology Co., Ltd, Shanghai 201203, China"],"raw_orcid":"https://orcid.org/0009-0003-5678-2486","affiliations":[{"raw_affiliation_string":"Shanghai Southgene Technology Co., Ltd., Shanghai 201203, China","institution_ids":[]},{"raw_affiliation_string":"Shanghai Southgene Technology Co ., Ltd, Shanghai 201203,","institution_ids":["https://openalex.org/I4210146919"]},{"raw_affiliation_string":"Shanghai Southgene Technology Co., Ltd, Shanghai 201203, China","institution_ids":["https://openalex.org/I4210150405"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044201157","display_name":"X. T. Chen","orcid":"https://orcid.org/0009-0005-0349-1890"},"institutions":[{"id":"https://openalex.org/I109935558","display_name":"Ningbo University","ror":"https://ror.org/03et85d35","country_code":"CN","type":"education","lineage":["https://openalex.org/I109935558"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]},{"id":"https://openalex.org/I4210165339","display_name":"Ningbo Institute of Industrial Technology","ror":"https://ror.org/05nqg3g04","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165339"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyi Chen","raw_affiliation_strings":["Ningbo Institute of Life and Health Industry, University of Chinese Academy of Sciences, Ningbo 315000, China","Ningbo Institute of Life and Health Industry, University of Chinese Academy of Sciences , Ningbo 315000,"],"raw_orcid":"https://orcid.org/0009-0005-0349-1890","affiliations":[{"raw_affiliation_string":"Ningbo Institute of Life and Health Industry, University of Chinese Academy of Sciences, Ningbo 315000, China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Ningbo Institute of Life and Health Industry, University of Chinese Academy of Sciences , Ningbo 315000,","institution_ids":["https://openalex.org/I4210165339","https://openalex.org/I109935558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033418772","display_name":"Liyun Yuan","orcid":"https://orcid.org/0000-0001-9122-6782"},"institutions":[{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liyun Yuan","raw_affiliation_strings":["National Genomics Data Center & Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences, Shanghai 200031, China","Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences National Genomics Data Center & Bio-Med Big Data Center, , Shanghai 200031,"],"raw_orcid":"https://orcid.org/0000-0001-9122-6782","affiliations":[{"raw_affiliation_string":"National Genomics Data Center & Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210096013"]},{"raw_affiliation_string":"Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences National Genomics Data Center & Bio-Med Big Data Center, , Shanghai 200031,","institution_ids":["https://openalex.org/I4210096013"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100419052","display_name":"Guoqing Zhang","orcid":"https://orcid.org/0000-0001-8827-7546"},"institutions":[{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]},{"id":"https://openalex.org/I4210144482","display_name":"Shanghai Sixth People's Hospital","ror":"https://ror.org/049zrh188","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210144482"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guoqing Zhang","raw_affiliation_strings":["National Genomics Data Center & Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences, Shanghai 200031, China","Shanghai Sixth People's Hospital, Shanghai 200233, China","Shanghai Sixth People\u2019s Hospital , Shanghai 200233,","Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences National Genomics Data Center & Bio-Med Big Data Center, , Shanghai 200031,"],"raw_orcid":"https://orcid.org/0000-0001-8827-7546","affiliations":[{"raw_affiliation_string":"National Genomics Data Center & Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210096013"]},{"raw_affiliation_string":"Shanghai Sixth People's Hospital, Shanghai 200233, China","institution_ids":["https://openalex.org/I4210144482"]},{"raw_affiliation_string":"Shanghai Sixth People\u2019s Hospital , Shanghai 200233,","institution_ids":["https://openalex.org/I4210144482"]},{"raw_affiliation_string":"Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences National Genomics Data Center & Bio-Med Big Data Center, , Shanghai 200031,","institution_ids":["https://openalex.org/I4210096013"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3500,"currency":"USD","value_usd":3500},"apc_paid":{"value":3500,"currency":"USD","value_usd":3500},"fwci":0.7035,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.74575178,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"23","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10336","display_name":"Cancer Cells and Metastasis","score":0.8679999709129333,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10336","display_name":"Cancer Cells and Metastasis","score":0.8679999709129333,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7629322409629822},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6044290065765381},{"id":"https://openalex.org/keywords/cell-type","display_name":"Cell type","score":0.5231779217720032},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.5052827000617981},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4377512037754059},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.40753281116485596},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3784920871257782},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.17353641986846924},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.151469886302948}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7629322409629822},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6044290065765381},{"id":"https://openalex.org/C189014844","wikidata":"https://www.wikidata.org/wiki/Q189118","display_name":"Cell type","level":3,"score":0.5231779217720032},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.5052827000617981},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4377512037754059},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40753281116485596},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3784920871257782},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.17353641986846924},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.151469886302948},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/gpbjnl/qzaf066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzaf066","pdf_url":"https://academic.oup.com/gpb/article-pdf/23/4/qzaf066/63974855/qzaf066.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40795159","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40795159","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, proteomics & bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:11378790","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12571502","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/gpbjnl/qzaf066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzaf066","pdf_url":"https://academic.oup.com/gpb/article-pdf/23/4/qzaf066/63974855/qzaf066.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2883768802","display_name":null,"funder_award_id":"XDB38030100","funder_id":"https://openalex.org/F4320321133","funder_display_name":"Chinese Academy of Sciences"},{"id":"https://openalex.org/G3292149396","display_name":null,"funder_award_id":"81827901","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4413112856.pdf"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W2005097381","https://openalex.org/W2108653105","https://openalex.org/W2133811295","https://openalex.org/W2462007197","https://openalex.org/W2801279436","https://openalex.org/W2801820889","https://openalex.org/W2895456557","https://openalex.org/W2907514116","https://openalex.org/W2931036699","https://openalex.org/W2951667249","https://openalex.org/W2953151710","https://openalex.org/W2959295202","https://openalex.org/W2973034691","https://openalex.org/W2984472267","https://openalex.org/W3004512212","https://openalex.org/W3013151148","https://openalex.org/W3016020856","https://openalex.org/W3047307039","https://openalex.org/W3107527779","https://openalex.org/W3123988232","https://openalex.org/W3126902084","https://openalex.org/W3132661792","https://openalex.org/W3164692211","https://openalex.org/W3201389210","https://openalex.org/W4225123279","https://openalex.org/W4288069725","https://openalex.org/W4291291938","https://openalex.org/W4297239552","https://openalex.org/W4306398987","https://openalex.org/W4307432965","https://openalex.org/W4312158493","https://openalex.org/W4378648463","https://openalex.org/W4386034505","https://openalex.org/W4386845047","https://openalex.org/W4387764879","https://openalex.org/W4388870003"],"related_works":["https://openalex.org/W4307993920","https://openalex.org/W1898241694","https://openalex.org/W4390695629","https://openalex.org/W2036616013","https://openalex.org/W3157307916","https://openalex.org/W2141091415","https://openalex.org/W2786822253","https://openalex.org/W4401169882","https://openalex.org/W4386916799","https://openalex.org/W2101753987"],"abstract_inverted_index":{"Research":[0],"on":[1,25,121],"cell":[2,41,87,92,97,109,139,156],"type":[3,42,110],"markers":[4],"helps":[5],"investigators":[6],"explore":[7],"the":[8,32,38,57,82,130],"diverse":[9],"cellular":[10],"composition":[11],"of":[12,19,34,40,53,86,133,145],"gastrointestinal":[13],"tumors,":[14,143],"thereby":[15],"enhancing":[16],"our":[17],"understanding":[18],"tumor":[20],"heterogeneity":[21],"and":[22,28,37,84,117],"its":[23],"impact":[24],"disease":[26],"progression":[27],"treatment":[29],"response.":[30],"However,":[31],"integration":[33],"large-scale":[35],"datasets":[36],"standardization":[39],"identification":[43,83],"remain":[44],"challenging.":[45],"Here,":[46],"we":[47,80,104,136],"developed":[48],"PreDigs,":[49],"a":[50,91],"user-friendly":[51],"database":[52],"predicted":[54],"signatures":[55],"for":[56,75],"digestive":[58],"system,":[59],"which":[60,146],"offers":[61,154],"124":[62],"curated":[63],"single-cell":[64],"RNA":[65],"sequencing":[66],"datasets,":[67],"covering":[68],"over":[69],"3.4":[70],"million":[71],"cells,":[72],"all":[73],"available":[74],"download.":[76],"After":[77],"unsupervised":[78],"clustering,":[79],"unified":[81],"nomenclature":[85],"subtype":[88],"labels,":[89],"constructing":[90],"ontology":[93],"tree":[94],"with":[95,165],"142":[96],"types":[98],"across":[99,127],"8":[100],"hierarchical":[101],"levels.":[102],"Meanwhile,":[103],"calculated":[105],"three":[106],"different":[107],"context-specific":[108],"markers,":[111],"including":[112],"\"Cell":[113],"Markers\",":[114,116,119],"\"Subtype":[115],"\"TPN":[118],"based":[120],"various":[122],"application":[123],"requirements":[124],"within":[125],"or":[126],"tissues.":[128],"Through":[129],"integrated":[131],"analysis":[132],"PreDigs":[134,153,168],"data,":[135],"identified":[137],"distinct":[138],"subpopulations":[140],"exclusive":[141],"to":[142,148,161],"one":[144],"corresponds":[147],"tumor-specific":[149],"endothelial":[150],"cells.":[151],"Additionally,":[152],"online":[155],"annotation":[157],"tools,":[158],"allowing":[159],"users":[160],"classify":[162],"single":[163],"cells":[164],"greater":[166],"flexibility.":[167],"is":[169],"accessible":[170],"at":[171],"https://www.biosino.org/predigs/.":[172]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-06-18T08:10:14.011955","created_date":"2025-10-10T00:00:00"}
