{"id":"https://openalex.org/W4412506830","doi":"https://doi.org/10.1093/gpbjnl/qzaf061","title":"Deciphering Complex Interactions Between LTR Retrotransposons and Three <i>Papaver</i> Species Using LTR_Stream","display_name":"Deciphering Complex Interactions Between LTR Retrotransposons and Three <i>Papaver</i> Species Using LTR_Stream","publication_year":2025,"publication_date":"2025-07-08","ids":{"openalex":"https://openalex.org/W4412506830","doi":"https://doi.org/10.1093/gpbjnl/qzaf061","pmid":"https://pubmed.ncbi.nlm.nih.gov/40685638"},"language":"en","primary_location":{"id":"doi:10.1093/gpbjnl/qzaf061","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzaf061","pdf_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzaf061/63808100/qzaf061.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzaf061/63808100/qzaf061.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019016114","display_name":"Tun Xu","orcid":"https://orcid.org/0000-0003-3194-1834"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Tun Xu","raw_affiliation_strings":["MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","Xi\u2019an Jiaotong University School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","Xi\u2019an Jiaotong University MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,"],"affiliations":[{"raw_affiliation_string":"MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Xi\u2019an Jiaotong University School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Xi\u2019an Jiaotong University MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031551214","display_name":"Stephen J. Bush","orcid":"https://orcid.org/0000-0001-9341-2562"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Stephen J Bush","raw_affiliation_strings":["School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi\u2019an Jiaotong University , Xi\u2019an 710049,","Xi\u2019an Jiaotong University School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,"],"affiliations":[{"raw_affiliation_string":"School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi\u2019an Jiaotong University , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Xi\u2019an Jiaotong University School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011664824","display_name":"Yizhuo Che","orcid":"https://orcid.org/0000-0003-4483-6582"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yizhuo Che","raw_affiliation_strings":["MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","Xi\u2019an Jiaotong University School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","Xi\u2019an Jiaotong University MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,"],"affiliations":[{"raw_affiliation_string":"MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Xi\u2019an Jiaotong University School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Xi\u2019an Jiaotong University MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041754114","display_name":"Huanhuan Zhao","orcid":"https://orcid.org/0009-0003-8641-6487"},"institutions":[{"id":"https://openalex.org/I4210121771","display_name":"First Affiliated Hospital of Xi'an Jiaotong University","ror":"https://ror.org/02tbvhh96","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210121771"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huanhuan Zhao","raw_affiliation_strings":["Center for Mathematical Medical, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China","The First Affiliated Hospital of Xi\u2019an Jiaotong University Center for Mathematical Medical, , Xi\u2019an 710061,"],"affiliations":[{"raw_affiliation_string":"Center for Mathematical Medical, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China","institution_ids":["https://openalex.org/I4210121771"]},{"raw_affiliation_string":"The First Affiliated Hospital of Xi\u2019an Jiaotong University Center for Mathematical Medical, , Xi\u2019an 710061,","institution_ids":["https://openalex.org/I4210121771"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102884871","display_name":"Tingjie Wang","orcid":"https://orcid.org/0000-0001-9238-0968"},"institutions":[{"id":"https://openalex.org/I4210121771","display_name":"First Affiliated Hospital of Xi'an Jiaotong University","ror":"https://ror.org/02tbvhh96","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210121771"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tingjie Wang","raw_affiliation_strings":["Center for Mathematical Medical, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China","The First Affiliated Hospital of Xi\u2019an Jiaotong University Center for Mathematical Medical, , Xi\u2019an 710061,"],"affiliations":[{"raw_affiliation_string":"Center for Mathematical Medical, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China","institution_ids":["https://openalex.org/I4210121771"]},{"raw_affiliation_string":"The First Affiliated Hospital of Xi\u2019an Jiaotong University Center for Mathematical Medical, , Xi\u2019an 710061,","institution_ids":["https://openalex.org/I4210121771"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087950121","display_name":"Peng Jia","orcid":"https://orcid.org/0000-0002-3429-919X"},"institutions":[{"id":"https://openalex.org/I4210121771","display_name":"First Affiliated Hospital of Xi'an Jiaotong University","ror":"https://ror.org/02tbvhh96","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210121771"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peng Jia","raw_affiliation_strings":["Department of Gynecology and Obstetrics, Center for Mathematical Medical, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China","The First Affiliated Hospital of Xi\u2019an Jiaotong University Department of Gynecology and Obstetrics, Center for Mathematical Medical, , Xi\u2019an 710061,"],"affiliations":[{"raw_affiliation_string":"Department of Gynecology and Obstetrics, Center for Mathematical Medical, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China","institution_ids":["https://openalex.org/I4210121771"]},{"raw_affiliation_string":"The First Affiliated Hospital of Xi\u2019an Jiaotong University Department of Gynecology and Obstetrics, Center for Mathematical Medical, , Xi\u2019an 710061,","institution_ids":["https://openalex.org/I4210121771"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101460007","display_name":"Songbo Wang","orcid":"https://orcid.org/0000-0003-4482-8128"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Songbo Wang","raw_affiliation_strings":["MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","Xi\u2019an Jiaotong University School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","Xi\u2019an Jiaotong University MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,"],"affiliations":[{"raw_affiliation_string":"MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Xi\u2019an Jiaotong University School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Xi\u2019an Jiaotong University MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018084991","display_name":"Peisen Sun","orcid":"https://orcid.org/0000-0003-0796-2133"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peisen Sun","raw_affiliation_strings":["MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","Xi\u2019an Jiaotong University School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","Xi\u2019an Jiaotong University MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,"],"affiliations":[{"raw_affiliation_string":"MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Xi\u2019an Jiaotong University School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Xi\u2019an Jiaotong University MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100653968","display_name":"Pengyu Zhang","orcid":"https://orcid.org/0000-0001-8696-4983"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pengyu Zhang","raw_affiliation_strings":["MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","Xi\u2019an Jiaotong University School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","Xi\u2019an Jiaotong University MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,"],"affiliations":[{"raw_affiliation_string":"MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Xi\u2019an Jiaotong University School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Xi\u2019an Jiaotong University MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Shenghan Gao","orcid":"https://orcid.org/0000-0002-3810-6527"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shenghan Gao","raw_affiliation_strings":["MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","Xi\u2019an Jiaotong University MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","Xi\u2019an Jiaotong University School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,"],"affiliations":[{"raw_affiliation_string":"MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Xi\u2019an Jiaotong University MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Xi\u2019an Jiaotong University School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yu Xu","orcid":"https://orcid.org/0000-0003-3386-1379"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Xu","raw_affiliation_strings":["School of Life Science and Technology, Xi'an Jiaotong University, Xi'an 710049, China","Xi\u2019an Jiaotong University School of Life Science and Technology, , Xi\u2019an 710049,"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Xi'an Jiaotong University, Xi'an 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Xi\u2019an Jiaotong University School of Life Science and Technology, , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103090275","display_name":"Chengyao Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210121771","display_name":"First Affiliated Hospital of Xi'an Jiaotong University","ror":"https://ror.org/02tbvhh96","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210121771"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chengyao Wang","raw_affiliation_strings":["Department of Endocrinology, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China","Genome Institute, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China","The First Affiliated Hospital of Xi\u2019an Jiaotong University Department of Endocrinology, , Xi\u2019an 710061,","Genome Institute, The First Affiliated Hospital of Xi\u2019an Jiaotong University , Xi\u2019an 710061,"],"affiliations":[{"raw_affiliation_string":"Department of Endocrinology, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China","institution_ids":["https://openalex.org/I4210121771"]},{"raw_affiliation_string":"Genome Institute, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China","institution_ids":["https://openalex.org/I4210121771"]},{"raw_affiliation_string":"The First Affiliated Hospital of Xi\u2019an Jiaotong University Department of Endocrinology, , Xi\u2019an 710061,","institution_ids":["https://openalex.org/I4210121771"]},{"raw_affiliation_string":"Genome Institute, The First Affiliated Hospital of Xi\u2019an Jiaotong University , Xi\u2019an 710061,","institution_ids":["https://openalex.org/I4210121771"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070692389","display_name":"Ningxin Dang","orcid":"https://orcid.org/0000-0003-2473-1142"},"institutions":[{"id":"https://openalex.org/I4210121771","display_name":"First Affiliated Hospital of Xi'an Jiaotong University","ror":"https://ror.org/02tbvhh96","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210121771"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ningxin Dang","raw_affiliation_strings":["Genome Institute, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China","Genome Institute, The First Affiliated Hospital of Xi\u2019an Jiaotong University , Xi\u2019an 710061,"],"affiliations":[{"raw_affiliation_string":"Genome Institute, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China","institution_ids":["https://openalex.org/I4210121771"]},{"raw_affiliation_string":"Genome Institute, The First Affiliated Hospital of Xi\u2019an Jiaotong University , Xi\u2019an 710061,","institution_ids":["https://openalex.org/I4210121771"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077864427","display_name":"Yong E. Zhang","orcid":"https://orcid.org/0000-0003-3770-2383"},"institutions":[{"id":"https://openalex.org/I18489884","display_name":"Kunming Institute of Zoology","ror":"https://ror.org/03m0vk445","country_code":"CN","type":"facility","lineage":["https://openalex.org/I18489884","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210120615","display_name":"Institute of Zoology","ror":"https://ror.org/01wtxm109","country_code":"KZ","type":"facility","lineage":["https://openalex.org/I4210120615","https://openalex.org/I4401200292"]},{"id":"https://openalex.org/I4210167311","display_name":"Institute of Zoology","ror":"https://ror.org/05skxkv18","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210167311"]}],"countries":["CN","KZ"],"is_corresponding":false,"raw_author_name":"Yong E Zhang","raw_affiliation_strings":["Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China","Chinese Academy of Sciences Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, , Beijing 100101,"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China","institution_ids":["https://openalex.org/I4210167311","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Chinese Academy of Sciences Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, , Beijing 100101,","institution_ids":["https://openalex.org/I4210120615","https://openalex.org/I4210167311","https://openalex.org/I18489884"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Xiaofei Yang","orcid":"https://orcid.org/0000-0002-5118-7755"},"institutions":[{"id":"https://openalex.org/I4210121771","display_name":"First Affiliated Hospital of Xi'an Jiaotong University","ror":"https://ror.org/02tbvhh96","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210121771"]},{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaofei Yang","raw_affiliation_strings":["Genome Institute, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China","MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","School of Computer Science and Technology, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","Xi\u2019an Jiaotong University MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","Xi\u2019an Jiaotong University School of Computer Science and Technology, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","Genome Institute, The First Affiliated Hospital of Xi\u2019an Jiaotong University , Xi\u2019an 710061,"],"affiliations":[{"raw_affiliation_string":"Genome Institute, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China","institution_ids":["https://openalex.org/I4210121771"]},{"raw_affiliation_string":"MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Computer Science and Technology, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Xi\u2019an Jiaotong University MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Xi\u2019an Jiaotong University School of Computer Science and Technology, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Genome Institute, The First Affiliated Hospital of Xi\u2019an Jiaotong University , Xi\u2019an 710061,","institution_ids":["https://openalex.org/I4210121771"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032548139","display_name":"Kai Ye","orcid":"https://orcid.org/0000-0002-2851-6741"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I210716285","display_name":"University of Applied Sciences Leiden","ror":"https://ror.org/0093src13","country_code":"NL","type":"education","lineage":["https://openalex.org/I210716285"]},{"id":"https://openalex.org/I4210121771","display_name":"First Affiliated Hospital of Xi'an Jiaotong University","ror":"https://ror.org/02tbvhh96","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210121771"]},{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN","NL"],"is_corresponding":false,"raw_author_name":"Kai Ye","raw_affiliation_strings":["Center for Mathematical Medical, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China","Faculty of Science, Leiden University, 2311 EZ, Leiden, The Netherlands","Genome Institute, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China","MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","School of Life Science and Technology, Xi'an Jiaotong University, Xi'an 710049, China","The First Affiliated Hospital of Xi\u2019an Jiaotong University Center for Mathematical Medical, , Xi\u2019an 710061,","Genome Institute, The First Affiliated Hospital of Xi\u2019an Jiaotong University , Xi\u2019an 710061,","Xi\u2019an Jiaotong University School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","Xi\u2019an Jiaotong University MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","Xi\u2019an Jiaotong University School of Life Science and Technology, , Xi\u2019an 710049,","Leiden University Faculty of Science, , Leiden 2311EZ, The"],"affiliations":[{"raw_affiliation_string":"Center for Mathematical Medical, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China","institution_ids":["https://openalex.org/I4210121771"]},{"raw_affiliation_string":"Faculty of Science, Leiden University, 2311 EZ, Leiden, The Netherlands","institution_ids":["https://openalex.org/I210716285","https://openalex.org/I121797337"]},{"raw_affiliation_string":"Genome Institute, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China","institution_ids":["https://openalex.org/I4210121771"]},{"raw_affiliation_string":"MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Life Science and Technology, Xi'an Jiaotong University, Xi'an 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"The First Affiliated Hospital of Xi\u2019an Jiaotong University Center for Mathematical Medical, , Xi\u2019an 710061,","institution_ids":["https://openalex.org/I4210121771"]},{"raw_affiliation_string":"Genome Institute, The First Affiliated Hospital of Xi\u2019an Jiaotong University , Xi\u2019an 710061,","institution_ids":["https://openalex.org/I4210121771"]},{"raw_affiliation_string":"Xi\u2019an Jiaotong University School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Xi\u2019an Jiaotong University MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Xi\u2019an Jiaotong University School of Life Science and Technology, , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Leiden University Faculty of Science, , Leiden 2311EZ, The","institution_ids":["https://openalex.org/I121797337","https://openalex.org/I210716285"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":16,"corresponding_author_ids":["https://openalex.org/A5019016114"],"corresponding_institution_ids":["https://openalex.org/I87445476"],"apc_list":{"value":3500,"currency":"USD","value_usd":3500},"apc_paid":{"value":3500,"currency":"USD","value_usd":3500},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12588659,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"23","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12795","display_name":"Banana Cultivation and Research","score":0.9700000286102295,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12795","display_name":"Banana Cultivation and Research","score":0.9700000286102295,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9667999744415283,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.900600016117096,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/retrotransposon","display_name":"Retrotransposon","score":0.8542038202285767},{"id":"https://openalex.org/keywords/long-terminal-repeat","display_name":"Long terminal repeat","score":0.5666626691818237},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5151530504226685},{"id":"https://openalex.org/keywords/papaver","display_name":"Papaver","score":0.4832399785518646},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37180662155151367},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3268003463745117},{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.2405078113079071},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22988420724868774},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.19035011529922485},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.16437938809394836},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.05912196636199951}],"concepts":[{"id":"https://openalex.org/C7029365","wikidata":"https://www.wikidata.org/wiki/Q413988","display_name":"Retrotransposon","level":5,"score":0.8542038202285767},{"id":"https://openalex.org/C199491388","wikidata":"https://www.wikidata.org/wiki/Q1869477","display_name":"Long terminal repeat","level":4,"score":0.5666626691818237},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5151530504226685},{"id":"https://openalex.org/C2778688723","wikidata":"https://www.wikidata.org/wiki/Q146391","display_name":"Papaver","level":2,"score":0.4832399785518646},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37180662155151367},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3268003463745117},{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.2405078113079071},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22988420724868774},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.19035011529922485},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.16437938809394836},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.05912196636199951}],"mesh":[{"descriptor_ui":"D010207","descriptor_name":"Papaver","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010207","descriptor_name":"Papaver","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010207","descriptor_name":"Papaver","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010207","descriptor_name":"Papaver","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011123","descriptor_name":"Polyploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011123","descriptor_name":"Polyploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011123","descriptor_name":"Polyploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011123","descriptor_name":"Polyploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018626","descriptor_name":"Retroelements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018626","descriptor_name":"Retroelements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018626","descriptor_name":"Retroelements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018626","descriptor_name":"Retroelements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020079","descriptor_name":"Terminal Repeat Sequences","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020079","descriptor_name":"Terminal Repeat Sequences","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020079","descriptor_name":"Terminal Repeat Sequences","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020079","descriptor_name":"Terminal Repeat Sequences","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/gpbjnl/qzaf061","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzaf061","pdf_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzaf061/63808100/qzaf061.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40685638","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40685638","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, proteomics & bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:11391422","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12582370","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/gpbjnl/qzaf061","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzaf061","pdf_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzaf061/63808100/qzaf061.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1561453903","display_name":null,"funder_award_id":"32125009","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2376276132","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G3085993365","display_name":null,"funder_award_id":"(Grant No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3179451784","display_name":null,"funder_award_id":"12024","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4262832189","display_name":null,"funder_award_id":"32422019","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G564566140","display_name":null,"funder_award_id":"32070663","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G593745682","display_name":null,"funder_award_id":"2024JC-JCQN-28","funder_id":"https://openalex.org/F4320324173","funder_display_name":"Natural Science Foundation of Shaanxi Province"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6134535952","display_name":null,"funder_award_id":"62172325","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6899908350","display_name":null,"funder_award_id":"xzy012024088","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G7726157001","display_name":null,"funder_award_id":"Grant No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8160189100","display_name":null,"funder_award_id":"2022YFC3400300","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8951484681","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324173","display_name":"Natural Science Foundation of Shaanxi Province","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4412506830.pdf","grobid_xml":"https://content.openalex.org/works/W4412506830.grobid-xml"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W1519266993","https://openalex.org/W1964064859","https://openalex.org/W1965368044","https://openalex.org/W1975474703","https://openalex.org/W2014677321","https://openalex.org/W2031611770","https://openalex.org/W2054254276","https://openalex.org/W2066392039","https://openalex.org/W2070021921","https://openalex.org/W2082330286","https://openalex.org/W2096652998","https://openalex.org/W2102619694","https://openalex.org/W2116659955","https://openalex.org/W2117984055","https://openalex.org/W2137282308","https://openalex.org/W2138365201","https://openalex.org/W2139399965","https://openalex.org/W2145694678","https://openalex.org/W2152869198","https://openalex.org/W2157453224","https://openalex.org/W2161248563","https://openalex.org/W2169456326","https://openalex.org/W2270023616","https://openalex.org/W2464345048","https://openalex.org/W2481029670","https://openalex.org/W2533355719","https://openalex.org/W2611735579","https://openalex.org/W2728987286","https://openalex.org/W2772231999","https://openalex.org/W2782152502","https://openalex.org/W2792112761","https://openalex.org/W2808503190","https://openalex.org/W2884361791","https://openalex.org/W2920529045","https://openalex.org/W2941910667","https://openalex.org/W2990558624","https://openalex.org/W3009684066","https://openalex.org/W3015258461","https://openalex.org/W3025472913","https://openalex.org/W3026218946","https://openalex.org/W3037070433","https://openalex.org/W3042744518","https://openalex.org/W3083313330","https://openalex.org/W3120273158","https://openalex.org/W3125962248","https://openalex.org/W3139292712","https://openalex.org/W3160067893","https://openalex.org/W3207563094","https://openalex.org/W4210944768","https://openalex.org/W4212957584","https://openalex.org/W4224315037","https://openalex.org/W4226172499","https://openalex.org/W4297492875","https://openalex.org/W4309028329","https://openalex.org/W4310766443","https://openalex.org/W4311459760","https://openalex.org/W4362661900","https://openalex.org/W4366413235","https://openalex.org/W4379051889","https://openalex.org/W4384436066","https://openalex.org/W4385157079","https://openalex.org/W4392044287","https://openalex.org/W4392861934","https://openalex.org/W4395000446","https://openalex.org/W4401123268","https://openalex.org/W4402003041"],"related_works":["https://openalex.org/W113856995","https://openalex.org/W3145616024","https://openalex.org/W2054036000","https://openalex.org/W2004644512","https://openalex.org/W2402665505","https://openalex.org/W2064967612","https://openalex.org/W2375807013","https://openalex.org/W2019364734","https://openalex.org/W2974385319","https://openalex.org/W188021765"],"abstract_inverted_index":{"Long":[0],"terminal":[1],"repeat":[2,17],"retrotransposons":[3],"(LTR-RTs),":[4],"a":[5,44,184],"major":[6],"type":[7],"of":[8,23,36,55,109,139,165,180],"class":[9],"I":[10],"transposable":[11],"elements,":[12],"are":[13],"the":[14,24,29,93,107,137,166,177,189,194],"most":[15],"abundant":[16],"element":[18],"in":[19,57,77,197],"plants.":[20],"The":[21],"study":[22],"interactions":[25,89,190],"between":[26,90,191],"LTR-RTs":[27,56,76,91,192],"and":[28,92,132,149,182,193],"host":[30,94,195],"genome":[31,196],"relies":[32],"on":[33],"high-resolution":[34,85],"characterization":[35],"LTR-RTs.":[37,174],"However,":[38],"for":[39,52,187],"non-model":[40,198],"species,":[41,62],"this":[42],"remains":[43],"challenge.":[45],"To":[46],"address":[47],"this,":[48],"we":[49,73,98,119],"developed":[50],"LTR_Stream":[51,181],"sublineage":[53],"clustering":[54,86],"specific":[58,122],"or":[59],"closely":[60],"related":[61],"providing":[63],"higher":[64],"precision":[65],"than":[66],"current":[67],"database-based":[68],"lineage-level":[69],"clustering.":[70],"Using":[71],"LTR_Stream,":[72],"analyzed":[74],"Retand":[75,102],"three":[78],"Papaver":[79,170],"species.":[80,200],"Our":[81],"findings":[82],"show":[83,152],"that":[84,100,121,153,160],"reveals":[87],"complex":[88],"genome.":[95],"For":[96],"instance,":[97],"found":[99],"autonomous":[101],"elements":[103],"could":[104],"spread":[105],"among":[106],"ancestors":[108],"different":[110],"subgenomes,":[111],"like":[112],"retroviral":[113],"pandemics,":[114],"enriching":[115],"genetic":[116],"diversity.":[117],"Additionally,":[118],"identified":[120],"truncated":[123],"fragments":[124],"containing":[125],"transcription":[126],"factor":[127],"motifs":[128],"such":[129],"as":[130],"TCP":[131],"bZIP":[133],"may":[134,162],"contribute":[135],"to":[136],"generation":[138],"novel":[140],"topologically":[141],"associating":[142],"domain-like":[143],"(TAD-like)":[144],"boundaries.":[145],"Notably,":[146],"our":[147],"pre-allopolyploidization":[148],"post-allopolyploidization":[150],"comparisons":[151],"these":[154],"effects":[155],"diminished":[156],"after":[157],"allopolyploidization,":[158],"suggesting":[159],"allopolyploidization":[161],"be":[163],"one":[164],"mechanisms":[167],"by":[168],"which":[169],"species":[171],"cope":[172],"with":[173],"We":[175],"demonstrated":[176],"potential":[178],"application":[179],"provided":[183],"reference":[185],"case":[186],"studying":[188],"plant":[199]},"counts_by_year":[],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-07-21T00:00:00"}