{"id":"https://openalex.org/W4404677102","doi":"https://doi.org/10.1093/gpbjnl/qzae084","title":"iMFP-LG: Identify Novel Multi-functional Peptides Using Protein Language Models and Graph-based Deep Learning","display_name":"iMFP-LG: Identify Novel Multi-functional Peptides Using Protein Language Models and Graph-based Deep Learning","publication_year":2024,"publication_date":"2024-11-25","ids":{"openalex":"https://openalex.org/W4404677102","doi":"https://doi.org/10.1093/gpbjnl/qzae084","pmid":"https://pubmed.ncbi.nlm.nih.gov/39585308"},"language":"en","primary_location":{"id":"doi:10.1093/gpbjnl/qzae084","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzae084","pdf_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzae084/60810804/qzae084.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzae084/60810804/qzae084.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109582497","display_name":"Jiawei Luo","orcid":"https://orcid.org/0009-0001-9965-296X"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiawei Luo","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology , Shenzhen 518055,","School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen 518055, China"],"raw_orcid":"https://orcid.org/0009-0001-9965-296X","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology , Shenzhen 518055,","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen 518055, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108834471","display_name":"Kejuan Zhao","orcid":"https://orcid.org/0009-0001-6842-1309"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kejuan Zhao","raw_affiliation_strings":["School of Science, Harbin Institute of Technology , Shenzhen 518055,","School of Science, Harbin Institute of Technology, Shenzhen 518055, China"],"raw_orcid":"https://orcid.org/0009-0001-6842-1309","affiliations":[{"raw_affiliation_string":"School of Science, Harbin Institute of Technology , Shenzhen 518055,","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Science, Harbin Institute of Technology, Shenzhen 518055, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100365536","display_name":"Junjie Chen","orcid":"https://orcid.org/0000-0002-0483-303X"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Junjie Chen","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology , Shenzhen 518055,","School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen 518055, China"],"raw_orcid":"https://orcid.org/0000-0002-0483-303X","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology , Shenzhen 518055,","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen 518055, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110659788","display_name":"Caihua Yang","orcid":"https://orcid.org/0009-0002-9766-6652"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Caihua Yang","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology , Shenzhen 518055,","School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen 518055, China"],"raw_orcid":"https://orcid.org/0009-0002-9766-6652","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology , Shenzhen 518055,","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen 518055, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110969697","display_name":"Fuchuan Qu","orcid":"https://orcid.org/0009-0001-4461-1378"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fuchuan Qu","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology , Shenzhen 518055,","School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen 518055, China"],"raw_orcid":"https://orcid.org/0009-0001-4461-1378","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology , Shenzhen 518055,","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen 518055, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024831550","display_name":"Yumeng Liu","orcid":"https://orcid.org/0009-0009-0888-6575"},"institutions":[{"id":"https://openalex.org/I4210152380","display_name":"Shenzhen Technology University","ror":"https://ror.org/04qzpec27","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210152380"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yumeng Liu","raw_affiliation_strings":["College of Big Data and Internet, Shenzhen Technology University , Shenzhen 518055,","College of Big Data and Internet, Shenzhen Technology University, Shenzhen 518055, China"],"raw_orcid":"https://orcid.org/0009-0009-0888-6575","affiliations":[{"raw_affiliation_string":"College of Big Data and Internet, Shenzhen Technology University , Shenzhen 518055,","institution_ids":["https://openalex.org/I4210152380"]},{"raw_affiliation_string":"College of Big Data and Internet, Shenzhen Technology University, Shenzhen 518055, China","institution_ids":["https://openalex.org/I4210152380"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109914116","display_name":"Xiaopeng Jin","orcid":"https://orcid.org/0000-0001-9481-3309"},"institutions":[{"id":"https://openalex.org/I4210152380","display_name":"Shenzhen Technology University","ror":"https://ror.org/04qzpec27","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210152380"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaopeng Jin","raw_affiliation_strings":["College of Big Data and Internet, Shenzhen Technology University , Shenzhen 518055,","College of Big Data and Internet, Shenzhen Technology University, Shenzhen 518055, China"],"raw_orcid":"https://orcid.org/0000-0001-9481-3309","affiliations":[{"raw_affiliation_string":"College of Big Data and Internet, Shenzhen Technology University , Shenzhen 518055,","institution_ids":["https://openalex.org/I4210152380"]},{"raw_affiliation_string":"College of Big Data and Internet, Shenzhen Technology University, Shenzhen 518055, China","institution_ids":["https://openalex.org/I4210152380"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100869715","display_name":"Ke Yan","orcid":"https://orcid.org/0000-0001-6314-0762"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]},{"id":"https://openalex.org/I202334528","display_name":"Beijing Electronic Science and Technology Institute","ror":"https://ror.org/01xdzh226","country_code":"CN","type":"education","lineage":["https://openalex.org/I202334528"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ke Yan","raw_affiliation_strings":["School of Computer Science and Technology, Beijing Institute of Technology , Beijing 10081,","School of Computer Science and Technology, Beijing Institute of Technology, Beijing 10081, China"],"raw_orcid":"https://orcid.org/0000-0001-6314-0762","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology , Beijing 10081,","institution_ids":["https://openalex.org/I125839683","https://openalex.org/I202334528"]},{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology, Beijing 10081, China","institution_ids":["https://openalex.org/I125839683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100354675","display_name":"Yang Zhang","orcid":"https://orcid.org/0000-0002-3503-5161"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Zhang","raw_affiliation_strings":["School of Science, Harbin Institute of Technology , Shenzhen 518055,","School of Science, Harbin Institute of Technology, Shenzhen 518055, China"],"raw_orcid":"https://orcid.org/0000-0002-3503-5161","affiliations":[{"raw_affiliation_string":"School of Science, Harbin Institute of Technology , Shenzhen 518055,","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Science, Harbin Institute of Technology, Shenzhen 518055, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100395532","display_name":"Bin Liu","orcid":"https://orcid.org/0000-0002-8520-8374"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]},{"id":"https://openalex.org/I202334528","display_name":"Beijing Electronic Science and Technology Institute","ror":"https://ror.org/01xdzh226","country_code":"CN","type":"education","lineage":["https://openalex.org/I202334528"]},{"id":"https://openalex.org/I4210117825","display_name":"Beijing Research Institute of Mechanical and Electrical Technology","ror":"https://ror.org/02bjnsn63","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210117825"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin Liu","raw_affiliation_strings":["Advanced Research Institute of Multidisciplinary Science, Beijing Institute of Technology , Beijing 10081,","School of Computer Science and Technology, Beijing Institute of Technology , Beijing 10081,","Advanced Research Institute of Multidisciplinary Science, Beijing Institute of Technology, Beijing 10081, China","School of Computer Science and Technology, Beijing Institute of Technology, Beijing 10081, China"],"raw_orcid":"https://orcid.org/0000-0002-8520-8374","affiliations":[{"raw_affiliation_string":"Advanced Research Institute of Multidisciplinary Science, Beijing Institute of Technology , Beijing 10081,","institution_ids":["https://openalex.org/I125839683","https://openalex.org/I4210117825"]},{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology , Beijing 10081,","institution_ids":["https://openalex.org/I125839683","https://openalex.org/I202334528"]},{"raw_affiliation_string":"Advanced Research Institute of Multidisciplinary Science, Beijing Institute of Technology, Beijing 10081, China","institution_ids":["https://openalex.org/I125839683"]},{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology, Beijing 10081, China","institution_ids":["https://openalex.org/I125839683"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100365536"],"corresponding_institution_ids":["https://openalex.org/I204983213"],"apc_list":{"value":3650,"currency":"USD","value_usd":3650},"apc_paid":{"value":3650,"currency":"USD","value_usd":3650},"fwci":1.9387,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.86759886,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"22","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.6625715494155884},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5753540992736816},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5586477518081665},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.493505597114563},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.46640080213546753},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.43762892484664917},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3709220886230469},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2393554151058197},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23774456977844238},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21714699268341064}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.6625715494155884},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5753540992736816},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5586477518081665},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.493505597114563},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.46640080213546753},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.43762892484664917},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3709220886230469},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2393554151058197},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23774456977844238},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21714699268341064},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/gpbjnl/qzae084","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzae084","pdf_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzae084/60810804/qzae084.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39585308","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39585308","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, proteomics & bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12011362","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12011362","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12011362/pdf/qzae084.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Genomics Proteomics Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/gpbjnl/qzae084","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzae084","pdf_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzae084/60810804/qzae084.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2761649230","display_name":null,"funder_award_id":"62102118","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5422280696","display_name":null,"funder_award_id":"62302317","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G717939380","display_name":null,"funder_award_id":"JCYJ20230807094318038","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G857785255","display_name":null,"funder_award_id":"62302316","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320319297","display_name":"Shenzhen Technology University","ror":"https://ror.org/04qzpec27"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404677102.pdf","grobid_xml":"https://content.openalex.org/works/W4404677102.grobid-xml"},"referenced_works_count":67,"referenced_works":["https://openalex.org/W1953606363","https://openalex.org/W1992450378","https://openalex.org/W2020465942","https://openalex.org/W2038681300","https://openalex.org/W2043338013","https://openalex.org/W2055043387","https://openalex.org/W2070980386","https://openalex.org/W2097834518","https://openalex.org/W2100621506","https://openalex.org/W2158714788","https://openalex.org/W2166912588","https://openalex.org/W2170747616","https://openalex.org/W2175270296","https://openalex.org/W2187089797","https://openalex.org/W2606678420","https://openalex.org/W2739980134","https://openalex.org/W2791848964","https://openalex.org/W2794956775","https://openalex.org/W2883631445","https://openalex.org/W2896457183","https://openalex.org/W2898402099","https://openalex.org/W2944959957","https://openalex.org/W2951433247","https://openalex.org/W2967717440","https://openalex.org/W2981142240","https://openalex.org/W2985955054","https://openalex.org/W2998197489","https://openalex.org/W3016691329","https://openalex.org/W3048086963","https://openalex.org/W3092406486","https://openalex.org/W3095583226","https://openalex.org/W3111392271","https://openalex.org/W3128972055","https://openalex.org/W3131121088","https://openalex.org/W3146944767","https://openalex.org/W3164453494","https://openalex.org/W3174642256","https://openalex.org/W3177500196","https://openalex.org/W3203053846","https://openalex.org/W3205925781","https://openalex.org/W4205192056","https://openalex.org/W4206950245","https://openalex.org/W4214943162","https://openalex.org/W4220655797","https://openalex.org/W4225460848","https://openalex.org/W4225665657","https://openalex.org/W4225758372","https://openalex.org/W4225983992","https://openalex.org/W4236236547","https://openalex.org/W4281294164","https://openalex.org/W4281480754","https://openalex.org/W4281742422","https://openalex.org/W4282039921","https://openalex.org/W4289525677","https://openalex.org/W4295879738","https://openalex.org/W4297733535","https://openalex.org/W4300996741","https://openalex.org/W4306404289","https://openalex.org/W4308370073","https://openalex.org/W4318071656","https://openalex.org/W4323438792","https://openalex.org/W4327550249","https://openalex.org/W4362657509","https://openalex.org/W4362677280","https://openalex.org/W4377223989","https://openalex.org/W4382203508","https://openalex.org/W4385814218"],"related_works":["https://openalex.org/W2905433371","https://openalex.org/W2888392564","https://openalex.org/W4310278675","https://openalex.org/W4388422664","https://openalex.org/W4390569940","https://openalex.org/W2013003323","https://openalex.org/W1981076832","https://openalex.org/W2024773645","https://openalex.org/W2001717001","https://openalex.org/W2043147644"],"abstract_inverted_index":{"Functional":[0],"peptides":[1,34,57,71,117,155,166,176,210],"are":[2],"short":[3],"amino":[4],"acid":[5],"fragments":[6],"that":[7,106,201],"have":[8,23,35,40],"a":[9,50,85,172],"wide":[10],"range":[11],"of":[12,20,32,53,55,63,124,141,146,164,208,216],"beneficial":[13],"functions":[14,161],"for":[15,68,87],"living":[16],"organisms.":[17],"The":[18,61,122],"majority":[19],"previous":[21],"studies":[22],"focused":[24],"on":[25,92,143],"mono-functional":[26],"peptides,":[27,48,148],"but":[28],"an":[29],"increasing":[30],"number":[31],"multi-functional":[33,47,70,88,115,119,147,209],"been":[36,41,59],"discovered.":[37],"Although":[38],"there":[39],"enormous":[42],"experimental":[43],"efforts":[44],"to":[45,152,185,213],"assay":[46],"only":[49],"small":[51],"portion":[52],"millions":[54,163],"known":[56,165],"has":[58],"explored.":[60],"development":[62],"effective":[64],"and":[65,76,97,118,135,159,189,196,211],"accurate":[66],"techniques":[67],"identifying":[69,113],"can":[72,203],"facilitate":[73],"their":[74],"discovery":[75,207],"mechanistic":[77],"understanding.":[78],"In":[79],"this":[80],"study,":[81],"we":[82,149],"presented":[83],"iMFP-LG,":[84],"method":[86],"peptide":[89,217],"identification":[90,145],"based":[91],"protein":[93],"language":[94],"models":[95],"(pLMs)":[96],"graph":[98],"attention":[99,131],"networks":[100],"(GATs).":[101],"Our":[102],"comparative":[103],"analyses":[104],"demonstrated":[105],"iMFP-LG":[107,125,142,151,202],"outperformed":[108],"the":[109,138,144,168,206,214],"state-of-the-art":[110],"methods":[111],"in":[112,133,167,205],"both":[114,157,187],"bioactive":[116],"therapeutic":[120],"peptides.":[121],"interpretability":[123],"was":[126,183],"also":[127],"illustrated":[128],"by":[129],"visualizing":[130],"patterns":[132],"pLMs":[134],"GATs.":[136],"Regarding":[137],"outstanding":[139],"performance":[140],"employed":[150],"screen":[153],"novel":[154],"with":[156],"anti-microbial":[158],"anti-cancer":[160,190],"from":[162],"UniRef90":[169],"database.":[170],"As":[171],"result,":[173],"eight":[174],"candidate":[175,182],"were":[177],"identified,":[178],"among":[179],"which":[180],"one":[181],"validated":[184],"process":[186],"anti-bacterial":[188],"properties":[191],"through":[192],"molecular":[193],"structure":[194],"alignment":[195],"biological":[197],"experiments.":[198],"We":[199],"anticipate":[200],"assist":[204],"contribute":[212],"advancement":[215],"drug":[218],"design.":[219]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2024-11-25T00:00:00"}
