{"id":"https://openalex.org/W4402741249","doi":"https://doi.org/10.1093/gpbjnl/qzae062","title":"Virus Infection Induces Immune Gene Activation with CTCF-anchored Enhancers and Chromatin Interactions in Pig Genome","display_name":"Virus Infection Induces Immune Gene Activation with CTCF-anchored Enhancers and Chromatin Interactions in Pig Genome","publication_year":2024,"publication_date":"2024-09-23","ids":{"openalex":"https://openalex.org/W4402741249","doi":"https://doi.org/10.1093/gpbjnl/qzae062","pmid":"https://pubmed.ncbi.nlm.nih.gov/39312688"},"language":"en","primary_location":{"id":"doi:10.1093/gpbjnl/qzae062","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzae062","pdf_url":null,"source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/gpbjnl/qzae062","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009363837","display_name":"Jianhua Cao","orcid":"https://orcid.org/0000-0002-5628-9558"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I4210151987","display_name":"Ministry of Agriculture and Rural Affairs","ror":"https://ror.org/05ckt8b96","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jianhua Cao","raw_affiliation_strings":["Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University , Wuhan 430070,","Key Laboratory of Swine Genetics and Breeding, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University , Wuhan 430070,","Huazhong Agricultural University Key Laboratory of Swine Genetics and Breeding, Ministry of Agriculture and Rural Affairs, , Wuhan 430070, China","Huazhong Agricultural University Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, , Wuhan 430070, China"],"raw_orcid":"https://orcid.org/0000-0002-5628-9558","affiliations":[{"raw_affiliation_string":"Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University , Wuhan 430070,","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Key Laboratory of Swine Genetics and Breeding, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University , Wuhan 430070,","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Huazhong Agricultural University Key Laboratory of Swine Genetics and Breeding, Ministry of Agriculture and Rural Affairs, , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248","https://openalex.org/I4210151987"]},{"raw_affiliation_string":"Huazhong Agricultural University Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020611548","display_name":"Ruimin Ren","orcid":null},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruimin Ren","raw_affiliation_strings":["Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University , Wuhan 430070,","Huazhong Agricultural University Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, , Wuhan 430070, China"],"raw_orcid":"https://orcid.org/0000-0002-5743-4171","affiliations":[{"raw_affiliation_string":"Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University , Wuhan 430070,","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Huazhong Agricultural University Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060167339","display_name":"Xiaolong Li","orcid":"https://orcid.org/0000-0002-4557-218X"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaolong Li","raw_affiliation_strings":["Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University , Wuhan 430070,","Huazhong Agricultural University Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, , Wuhan 430070, China"],"raw_orcid":"https://orcid.org/0000-0002-4557-218X","affiliations":[{"raw_affiliation_string":"Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University , Wuhan 430070,","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Huazhong Agricultural University Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030100392","display_name":"X.T. Zhang","orcid":"https://orcid.org/0000-0003-0421-1692"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoqian Zhang","raw_affiliation_strings":["Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University , Wuhan 430070,","Huazhong Agricultural University Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, , Wuhan 430070, China"],"raw_orcid":"https://orcid.org/0000-0003-0421-1692","affiliations":[{"raw_affiliation_string":"Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University , Wuhan 430070,","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Huazhong Agricultural University Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102552066","display_name":"Yan Sun","orcid":"https://orcid.org/0000-0003-0375-0299"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Sun","raw_affiliation_strings":["Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University , Wuhan 430070,","Huazhong Agricultural University Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, , Wuhan 430070, China"],"raw_orcid":"https://orcid.org/0000-0003-0375-0299","affiliations":[{"raw_affiliation_string":"Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University , Wuhan 430070,","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Huazhong Agricultural University Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076435723","display_name":"Xiaohuan Tian","orcid":"https://orcid.org/0000-0001-6812-0322"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaohuan Tian","raw_affiliation_strings":["Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University , Wuhan 430070,","Huazhong Agricultural University Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, , Wuhan 430070, China"],"raw_orcid":"https://orcid.org/0000-0001-6812-0322","affiliations":[{"raw_affiliation_string":"Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University , Wuhan 430070,","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Huazhong Agricultural University Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057262711","display_name":"Ru Liu","orcid":"https://orcid.org/0000-0003-3926-2510"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ru Liu","raw_affiliation_strings":["Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University , Wuhan 430070,","Huazhong Agricultural University Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, , Wuhan 430070, China"],"raw_orcid":"https://orcid.org/0000-0003-3926-2510","affiliations":[{"raw_affiliation_string":"Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University , Wuhan 430070,","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Huazhong Agricultural University Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100776470","display_name":"Xiangdong Liu","orcid":"https://orcid.org/0000-0002-4415-6109"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I4210151987","display_name":"Ministry of Agriculture and Rural Affairs","ror":"https://ror.org/05ckt8b96","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangdong Liu","raw_affiliation_strings":["Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University , Wuhan 430070,","Key Laboratory of Swine Genetics and Breeding, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University , Wuhan 430070,","Huazhong Agricultural University Key Laboratory of Swine Genetics and Breeding, Ministry of Agriculture and Rural Affairs, , Wuhan 430070, China","Huazhong Agricultural University Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, , Wuhan 430070, China"],"raw_orcid":"https://orcid.org/0000-0002-4415-6109","affiliations":[{"raw_affiliation_string":"Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University , Wuhan 430070,","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Key Laboratory of Swine Genetics and Breeding, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University , Wuhan 430070,","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Huazhong Agricultural University Key Laboratory of Swine Genetics and Breeding, Ministry of Agriculture and Rural Affairs, , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248","https://openalex.org/I4210151987"]},{"raw_affiliation_string":"Huazhong Agricultural University Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028790437","display_name":"Yijun Ruan","orcid":"https://orcid.org/0000-0001-5881-569X"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yijun Ruan","raw_affiliation_strings":["Life Sciences Institute, Zhejiang University , Hangzhou 310058,","Zhejiang University Life Sciences Institute, , Hangzhou 310058, China"],"raw_orcid":"https://orcid.org/0000-0001-5881-569X","affiliations":[{"raw_affiliation_string":"Life Sciences Institute, Zhejiang University , Hangzhou 310058,","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang University Life Sciences Institute, , Hangzhou 310058, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100404163","display_name":"Guoliang Li","orcid":"https://orcid.org/0000-0003-1601-6640"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guoliang Li","raw_affiliation_strings":["Engineering Research Center of Intelligent Technology for Agriculture, Ministry of Education, Huazhong Agricultural University , Wuhan 430070,","Key Laboratory of Smart Farming for Agricultural Animals, College of Informatics, Huazhong Agricultural University , Wuhan 430070,","National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070,","Huazhong Agricultural University Engineering Research Center of Intelligent Technology for Agriculture, Ministry of Education, , Wuhan 430070, China","National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070, China","Huazhong Agricultural University Key Laboratory of Smart Farming for Agricultural Animals, College of Informatics, , Wuhan 430070, China"],"raw_orcid":"https://orcid.org/0000-0003-1601-6640","affiliations":[{"raw_affiliation_string":"Engineering Research Center of Intelligent Technology for Agriculture, Ministry of Education, Huazhong Agricultural University , Wuhan 430070,","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Key Laboratory of Smart Farming for Agricultural Animals, College of Informatics, Huazhong Agricultural University , Wuhan 430070,","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070,","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Huazhong Agricultural University Engineering Research Center of Intelligent Technology for Agriculture, Ministry of Education, , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Huazhong Agricultural University Key Laboratory of Smart Farming for Agricultural Animals, College of Informatics, , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065223172","display_name":"Shuhong Zhao","orcid":"https://orcid.org/0000-0002-3997-2320"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I4210151987","display_name":"Ministry of Agriculture and Rural Affairs","ror":"https://ror.org/05ckt8b96","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuhong Zhao","raw_affiliation_strings":["Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University , Wuhan 430070,","Key Laboratory of Swine Genetics and Breeding, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University , Wuhan 430070,","Huazhong Agricultural University Key Laboratory of Swine Genetics and Breeding, Ministry of Agriculture and Rural Affairs, , Wuhan 430070, China","Huazhong Agricultural University Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, , Wuhan 430070, China"],"raw_orcid":"https://orcid.org/0000-0002-3997-2320","affiliations":[{"raw_affiliation_string":"Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University , Wuhan 430070,","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Key Laboratory of Swine Genetics and Breeding, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University , Wuhan 430070,","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Huazhong Agricultural University Key Laboratory of Swine Genetics and Breeding, Ministry of Agriculture and Rural Affairs, , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248","https://openalex.org/I4210151987"]},{"raw_affiliation_string":"Huazhong Agricultural University Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, College of Animal Science and Technology, , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5009363837"],"corresponding_institution_ids":["https://openalex.org/I204823248","https://openalex.org/I4210151987"],"apc_list":{"value":3500,"currency":"USD","value_usd":3500},"apc_paid":{"value":3500,"currency":"USD","value_usd":3500},"fwci":0.211,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.56522626,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"22","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.7767999768257141,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.7767999768257141,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.7717999815940857,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12159","display_name":"T-cell and Retrovirus Studies","score":0.7601000070571899,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ctcf","display_name":"CTCF","score":0.8376328945159912},{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.786420464515686},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.6985124349594116},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6866520643234253},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6812019944190979},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5805782675743103},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.5626018047332764},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.4731874465942383},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.46532127261161804},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.45650914311408997},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2418936789035797}],"concepts":[{"id":"https://openalex.org/C2778760011","wikidata":"https://www.wikidata.org/wiki/Q21163346","display_name":"CTCF","level":5,"score":0.8376328945159912},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.786420464515686},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.6985124349594116},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6866520643234253},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6812019944190979},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5805782675743103},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.5626018047332764},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.4731874465942383},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.46532127261161804},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.45650914311408997},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2418936789035797}],"mesh":[{"descriptor_ui":"D000076246","descriptor_name":"CCCTC-Binding Factor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000076246","descriptor_name":"CCCTC-Binding Factor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000076246","descriptor_name":"CCCTC-Binding Factor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000076246","descriptor_name":"CCCTC-Binding Factor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000076246","descriptor_name":"CCCTC-Binding Factor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000076246","descriptor_name":"CCCTC-Binding Factor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000076246","descriptor_name":"CCCTC-Binding Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000076246","descriptor_name":"CCCTC-Binding Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000076246","descriptor_name":"CCCTC-Binding Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000076246","descriptor_name":"CCCTC-Binding Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000076246","descriptor_name":"CCCTC-Binding Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000076246","descriptor_name":"CCCTC-Binding Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D011070","descriptor_name":"Poly I-C","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D011070","descriptor_name":"Poly I-C","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D011070","descriptor_name":"Poly I-C","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D011070","descriptor_name":"Poly I-C","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D011070","descriptor_name":"Poly I-C","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D011070","descriptor_name":"Poly I-C","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D012319","descriptor_name":"RNA Polymerase II","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012319","descriptor_name":"RNA Polymerase II","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012319","descriptor_name":"RNA Polymerase II","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012319","descriptor_name":"RNA Polymerase II","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012319","descriptor_name":"RNA Polymerase II","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012319","descriptor_name":"RNA Polymerase II","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012319","descriptor_name":"RNA Polymerase II","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012319","descriptor_name":"RNA Polymerase II","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012319","descriptor_name":"RNA Polymerase II","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012319","descriptor_name":"RNA Polymerase II","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013552","descriptor_name":"Swine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013552","descriptor_name":"Swine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013552","descriptor_name":"Swine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013552","descriptor_name":"Swine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013552","descriptor_name":"Swine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013552","descriptor_name":"Swine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015533","descriptor_name":"Transcriptional Activation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015533","descriptor_name":"Transcriptional Activation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015533","descriptor_name":"Transcriptional Activation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015533","descriptor_name":"Transcriptional Activation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/gpbjnl/qzae062","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzae062","pdf_url":null,"source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39312688","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39312688","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, proteomics & bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11725346","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11725346","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11725346/pdf/qzae062.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Genomics Proteomics Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/gpbjnl/qzae062","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzae062","pdf_url":null,"source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1429294213","display_name":null,"funder_award_id":"31790414","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3545808490","display_name":null,"funder_award_id":"31771402","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G5603979315","display_name":null,"funder_award_id":"31772563","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7162986449","display_name":null,"funder_award_id":"31771402","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322186","display_name":"Natural Science Foundation of Hubei Province","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W1941076503","https://openalex.org/W1973062929","https://openalex.org/W1985621639","https://openalex.org/W2011463791","https://openalex.org/W2021341670","https://openalex.org/W2036897871","https://openalex.org/W2041235082","https://openalex.org/W2067251546","https://openalex.org/W2070021921","https://openalex.org/W2078526277","https://openalex.org/W2090037139","https://openalex.org/W2096086497","https://openalex.org/W2100329957","https://openalex.org/W2102619694","https://openalex.org/W2108234281","https://openalex.org/W2121364586","https://openalex.org/W2125397535","https://openalex.org/W2161753744","https://openalex.org/W2169769306","https://openalex.org/W2170551349","https://openalex.org/W2171168707","https://openalex.org/W2195190137","https://openalex.org/W2195363237","https://openalex.org/W2461013690","https://openalex.org/W2577253766","https://openalex.org/W2600121124","https://openalex.org/W2742842976","https://openalex.org/W2762003738","https://openalex.org/W2794410845","https://openalex.org/W2797313452","https://openalex.org/W2882996798","https://openalex.org/W2900335126","https://openalex.org/W2904743679","https://openalex.org/W2912313430","https://openalex.org/W2935024989","https://openalex.org/W2951540439","https://openalex.org/W2981124349","https://openalex.org/W2982555675","https://openalex.org/W2984988759","https://openalex.org/W2999515372","https://openalex.org/W3005380817","https://openalex.org/W3034696123","https://openalex.org/W3087466081","https://openalex.org/W3118229450","https://openalex.org/W3123582245","https://openalex.org/W3194665116","https://openalex.org/W3211014030","https://openalex.org/W3211162587","https://openalex.org/W4200031150","https://openalex.org/W4205658126","https://openalex.org/W4213133991","https://openalex.org/W4254687493","https://openalex.org/W4390340766"],"related_works":["https://openalex.org/W3012693835","https://openalex.org/W2735826995","https://openalex.org/W3155252843","https://openalex.org/W3014694882","https://openalex.org/W4321786133","https://openalex.org/W2899714688","https://openalex.org/W2019937806","https://openalex.org/W2596447340","https://openalex.org/W4394834518","https://openalex.org/W1973726475"],"abstract_inverted_index":{"Chromatin":[0],"organization":[1,76,186],"is":[2],"important":[3],"for":[4],"gene":[5,150],"transcription":[6,151],"in":[7,23,55,77,105,152,158,174],"pig":[8],"genome.":[9],"However,":[10],"its":[11],"three-dimensional":[12],"(3D)":[13],"structure":[14],"and":[15,50,60,148,164,176,187],"dynamics":[16,188],"are":[17,123,177],"much":[18],"less":[19],"investigated":[20],"than":[21,88],"those":[22],"human.":[24],"Here,":[25],"we":[26],"applied":[27],"the":[28,41,73,78,82,90,98,114,120,126,135,140,190],"long-read":[29],"chromatin":[30,43,84,103,107,185],"interaction":[31],"analysis":[32],"by":[33,46],"paired-end":[34],"tag":[35],"sequencing":[36],"(ChIA-PET)":[37],"method":[38],"to":[39,167,172,180],"map":[40],"whole-genome":[42],"interactions":[44,104],"mediated":[45],"CCCTC-binding":[47],"factor":[48],"(CTCF)":[49],"RNA":[51],"polymerase":[52],"II":[53],"(RNAPII)":[54],"porcine":[56],"macrophage":[57],"cells":[58,80],"before":[59],"after":[61],"polyinosinic-polycytidylic":[62],"acid":[63],"[Poly(I:C)]":[64],"induction.":[65],"Our":[66,156],"results":[67],"reveal":[68],"that":[69,119],"Poly(I:C)":[70],"induction":[71],"impacts":[72],"3D":[74,153],"genome":[75,154],"3D4/21":[79],"at":[81,89],"fine-scale":[83],"loop":[85],"level":[86],"rather":[87],"large-scale":[91],"domain":[92],"level.":[93],"Furthermore,":[94],"our":[95],"findings":[96,157],"underscore":[97],"pivotal":[99],"role":[100],"of":[101,113,128,192],"CTCF-anchored":[102,121],"reshaping":[106],"architecture":[108],"during":[109],"immune":[110,129],"responses.":[111],"Knockout":[112],"CTCF-binding":[115],"locus":[116],"further":[117],"confirms":[118],"enhancers":[122],"associated":[124],"with":[125],"activation":[127],"genes":[130],"via":[131],"long-range":[132],"interactions.":[133],"Notably,":[134],"ChIA-PET":[136],"data":[137],"also":[138,178],"support":[139],"spatial":[141],"relationship":[142],"between":[143],"single":[144],"nucleotide":[145],"polymorphisms":[146],"(SNPs)":[147],"related":[149,171],"aspect.":[155],"this":[159],"study":[160],"provide":[161],"new":[162],"clues":[163],"potential":[165],"targets":[166],"explore":[168],"key":[169],"elements":[170],"diseases":[173],"pigs":[175],"likely":[179],"shed":[181],"light":[182],"on":[183],"elucidating":[184],"underlying":[189],"process":[191],"mammalian":[193],"infectious":[194],"diseases.":[195]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
