{"id":"https://openalex.org/W4394687440","doi":"https://doi.org/10.1093/gpbjnl/qzae032","title":"Nphos: Database and Predictor of Protein <i>N</i> -phosphorylation","display_name":"Nphos: Database and Predictor of Protein <i>N</i> -phosphorylation","publication_year":2024,"publication_date":"2024-04-10","ids":{"openalex":"https://openalex.org/W4394687440","doi":"https://doi.org/10.1093/gpbjnl/qzae032","pmid":"https://pubmed.ncbi.nlm.nih.gov/39380205"},"language":"en","primary_location":{"id":"doi:10.1093/gpbjnl/qzae032","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzae032","pdf_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzae032/57206663/qzae032.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzae032/57206663/qzae032.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052398583","display_name":"Mingxiao Zhao","orcid":"https://orcid.org/0000-0002-8821-3654"},"institutions":[{"id":"https://openalex.org/I109935558","display_name":"Ningbo University","ror":"https://ror.org/03et85d35","country_code":"CN","type":"education","lineage":["https://openalex.org/I109935558"]},{"id":"https://openalex.org/I159389169","display_name":"Ningbo University of Technology","ror":"https://ror.org/037dym702","country_code":"CN","type":"education","lineage":["https://openalex.org/I159389169"]},{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ming-Xiao Zhao","raw_affiliation_strings":["Department of Chemical Biology, Key Laboratory for Chemical Biology of Fujian Province, College of Chemistry and Chemical Engineering, Xiamen University , Xiamen 361005,","Institute of Drug Discovery Technology, Ningbo University , Ningbo 315211,","Institute of Drug Discovery Technology, Ningbo University, Ningbo 315211, China","Department of Chemical Biology, Key Laboratory for Chemical Biology of Fujian Province, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China"],"affiliations":[{"raw_affiliation_string":"Department of Chemical Biology, Key Laboratory for Chemical Biology of Fujian Province, College of Chemistry and Chemical Engineering, Xiamen University , Xiamen 361005,","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Institute of Drug Discovery Technology, Ningbo University , Ningbo 315211,","institution_ids":["https://openalex.org/I159389169"]},{"raw_affiliation_string":"Institute of Drug Discovery Technology, Ningbo University, Ningbo 315211, China","institution_ids":["https://openalex.org/I109935558"]},{"raw_affiliation_string":"Department of Chemical Biology, Key Laboratory for Chemical Biology of Fujian Province, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024571968","display_name":"Ruofan Ding","orcid":"https://orcid.org/0000-0003-1667-9866"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruo-Fan Ding","raw_affiliation_strings":["State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Faculty of Medicine and Life Sciences, Xiamen University , Xiamen 361102,","State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Faculty of Medicine and Life Sciences, Xiamen University, Xiamen 361102, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Faculty of Medicine and Life Sciences, Xiamen University , Xiamen 361102,","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Faculty of Medicine and Life Sciences, Xiamen University, Xiamen 361102, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100435700","display_name":"Qiang Chen","orcid":"https://orcid.org/0000-0003-2624-8904"},"institutions":[{"id":"https://openalex.org/I109935558","display_name":"Ningbo University","ror":"https://ror.org/03et85d35","country_code":"CN","type":"education","lineage":["https://openalex.org/I109935558"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiang Chen","raw_affiliation_strings":["Zhejiang Key Laboratory of Pathophysiology, Department of Biochemistry and Molecular Biology, Health Science Center, Ningbo University , Ningbo 315211,","Zhejiang Key Laboratory of Pathophysiology, Department of Biochemistry and Molecular Biology, Health Science Center, Ningbo University, Ningbo 315211, China"],"affiliations":[{"raw_affiliation_string":"Zhejiang Key Laboratory of Pathophysiology, Department of Biochemistry and Molecular Biology, Health Science Center, Ningbo University , Ningbo 315211,","institution_ids":["https://openalex.org/I109935558"]},{"raw_affiliation_string":"Zhejiang Key Laboratory of Pathophysiology, Department of Biochemistry and Molecular Biology, Health Science Center, Ningbo University, Ningbo 315211, China","institution_ids":["https://openalex.org/I109935558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076691524","display_name":"Junhua Meng","orcid":null},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I4387152444","display_name":"BGI Genomics","ror":"https://ror.org/0155ctq43","country_code":null,"type":"company","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387152444"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junhua Meng","raw_affiliation_strings":["BGI Genomics, BGI-Shenzhen , Shenzhen 518083,","BGI Genomics, BGI-Shenzhen, Shenzhen 518083, China"],"affiliations":[{"raw_affiliation_string":"BGI Genomics, BGI-Shenzhen , Shenzhen 518083,","institution_ids":["https://openalex.org/I100135526"]},{"raw_affiliation_string":"BGI Genomics, BGI-Shenzhen, Shenzhen 518083, China","institution_ids":["https://openalex.org/I100135526","https://openalex.org/I4387152444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102805650","display_name":"Fulai Li","orcid":"https://orcid.org/0000-0002-5710-7795"},"institutions":[{"id":"https://openalex.org/I109935558","display_name":"Ningbo University","ror":"https://ror.org/03et85d35","country_code":"CN","type":"education","lineage":["https://openalex.org/I109935558"]},{"id":"https://openalex.org/I159389169","display_name":"Ningbo University of Technology","ror":"https://ror.org/037dym702","country_code":"CN","type":"education","lineage":["https://openalex.org/I159389169"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fulai Li","raw_affiliation_strings":["Institute of Drug Discovery Technology, Ningbo University , Ningbo 315211,","Institute of Drug Discovery Technology, Ningbo University, Ningbo 315211, China"],"affiliations":[{"raw_affiliation_string":"Institute of Drug Discovery Technology, Ningbo University , Ningbo 315211,","institution_ids":["https://openalex.org/I159389169"]},{"raw_affiliation_string":"Institute of Drug Discovery Technology, Ningbo University, Ningbo 315211, China","institution_ids":["https://openalex.org/I109935558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093006504","display_name":"Songsen Fu","orcid":null},"institutions":[{"id":"https://openalex.org/I109935558","display_name":"Ningbo University","ror":"https://ror.org/03et85d35","country_code":"CN","type":"education","lineage":["https://openalex.org/I109935558"]},{"id":"https://openalex.org/I159389169","display_name":"Ningbo University of Technology","ror":"https://ror.org/037dym702","country_code":"CN","type":"education","lineage":["https://openalex.org/I159389169"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Songsen Fu","raw_affiliation_strings":["Institute of Drug Discovery Technology, Ningbo University , Ningbo 315211,","Institute of Drug Discovery Technology, Ningbo University, Ningbo 315211, China"],"affiliations":[{"raw_affiliation_string":"Institute of Drug Discovery Technology, Ningbo University , Ningbo 315211,","institution_ids":["https://openalex.org/I159389169"]},{"raw_affiliation_string":"Institute of Drug Discovery Technology, Ningbo University, Ningbo 315211, China","institution_ids":["https://openalex.org/I109935558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074278493","display_name":"Biling Huang","orcid":"https://orcid.org/0000-0002-1060-8787"},"institutions":[{"id":"https://openalex.org/I109935558","display_name":"Ningbo University","ror":"https://ror.org/03et85d35","country_code":"CN","type":"education","lineage":["https://openalex.org/I109935558"]},{"id":"https://openalex.org/I159389169","display_name":"Ningbo University of Technology","ror":"https://ror.org/037dym702","country_code":"CN","type":"education","lineage":["https://openalex.org/I159389169"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Biling Huang","raw_affiliation_strings":["Institute of Drug Discovery Technology, Ningbo University , Ningbo 315211,","Institute of Drug Discovery Technology, Ningbo University, Ningbo 315211, China"],"affiliations":[{"raw_affiliation_string":"Institute of Drug Discovery Technology, Ningbo University , Ningbo 315211,","institution_ids":["https://openalex.org/I159389169"]},{"raw_affiliation_string":"Institute of Drug Discovery Technology, Ningbo University, Ningbo 315211, China","institution_ids":["https://openalex.org/I109935558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100350993","display_name":"Yan Liu","orcid":"https://orcid.org/0000-0001-6112-7898"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Liu","raw_affiliation_strings":["Department of Chemical Biology, Key Laboratory for Chemical Biology of Fujian Province, College of Chemistry and Chemical Engineering, Xiamen University , Xiamen 361005,","Department of Chemical Biology, Key Laboratory for Chemical Biology of Fujian Province, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China"],"affiliations":[{"raw_affiliation_string":"Department of Chemical Biology, Key Laboratory for Chemical Biology of Fujian Province, College of Chemistry and Chemical Engineering, Xiamen University , Xiamen 361005,","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Department of Chemical Biology, Key Laboratory for Chemical Biology of Fujian Province, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011934562","display_name":"Zhi\u2010Liang Ji","orcid":"https://orcid.org/0000-0003-1190-7655"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhi-Liang Ji","raw_affiliation_strings":["State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Faculty of Medicine and Life Sciences, Xiamen University , Xiamen 361102,","State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Faculty of Medicine and Life Sciences, Xiamen University, Xiamen 361102, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Faculty of Medicine and Life Sciences, Xiamen University , Xiamen 361102,","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Faculty of Medicine and Life Sciences, Xiamen University, Xiamen 361102, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072862274","display_name":"Yufen Zhao","orcid":"https://orcid.org/0000-0002-8513-1354"},"institutions":[{"id":"https://openalex.org/I109935558","display_name":"Ningbo University","ror":"https://ror.org/03et85d35","country_code":"CN","type":"education","lineage":["https://openalex.org/I109935558"]},{"id":"https://openalex.org/I159389169","display_name":"Ningbo University of Technology","ror":"https://ror.org/037dym702","country_code":"CN","type":"education","lineage":["https://openalex.org/I159389169"]},{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yufen Zhao","raw_affiliation_strings":["Department of Chemical Biology, Key Laboratory for Chemical Biology of Fujian Province, College of Chemistry and Chemical Engineering, Xiamen University , Xiamen 361005,","Institute of Drug Discovery Technology, Ningbo University , Ningbo 315211,","Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Department of Chemistry, Tsinghua University , Beijing 100084,","Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Department of Chemistry, Tsinghua University, Beijing 100084, China","Institute of Drug Discovery Technology, Ningbo University, Ningbo 315211, China","Department of Chemical Biology, Key Laboratory for Chemical Biology of Fujian Province, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China"],"affiliations":[{"raw_affiliation_string":"Department of Chemical Biology, Key Laboratory for Chemical Biology of Fujian Province, College of Chemistry and Chemical Engineering, Xiamen University , Xiamen 361005,","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Institute of Drug Discovery Technology, Ningbo University , Ningbo 315211,","institution_ids":["https://openalex.org/I159389169"]},{"raw_affiliation_string":"Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Department of Chemistry, Tsinghua University , Beijing 100084,","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Department of Chemistry, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Institute of Drug Discovery Technology, Ningbo University, Ningbo 315211, China","institution_ids":["https://openalex.org/I109935558"]},{"raw_affiliation_string":"Department of Chemical Biology, Key Laboratory for Chemical Biology of Fujian Province, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China","institution_ids":["https://openalex.org/I191208505"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5052398583"],"corresponding_institution_ids":["https://openalex.org/I109935558","https://openalex.org/I159389169","https://openalex.org/I191208505"],"apc_list":{"value":3500,"currency":"USD","value_usd":3500},"apc_paid":{"value":3500,"currency":"USD","value_usd":3500},"fwci":1.4095,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.801442,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"22","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.8880751729011536},{"id":"https://openalex.org/keywords/protein-phosphorylation","display_name":"Protein phosphorylation","score":0.696782648563385},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.528249204158783},{"id":"https://openalex.org/keywords/human-proteome-project","display_name":"Human proteome project","score":0.5252171158790588},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4740217328071594},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4487150013446808},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4220525920391083},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.41235312819480896},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3648001253604889},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.3428497612476349},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.3009411692619324},{"id":"https://openalex.org/keywords/protein-kinase-a","display_name":"Protein kinase A","score":0.15262219309806824},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12583616375923157}],"concepts":[{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.8880751729011536},{"id":"https://openalex.org/C87325107","wikidata":"https://www.wikidata.org/wiki/Q7251493","display_name":"Protein phosphorylation","level":4,"score":0.696782648563385},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.528249204158783},{"id":"https://openalex.org/C94795543","wikidata":"https://www.wikidata.org/wiki/Q3813754","display_name":"Human proteome project","level":4,"score":0.5252171158790588},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4740217328071594},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4487150013446808},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4220525920391083},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.41235312819480896},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3648001253604889},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.3428497612476349},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.3009411692619324},{"id":"https://openalex.org/C97029542","wikidata":"https://www.wikidata.org/wiki/Q281417","display_name":"Protein kinase A","level":3,"score":0.15262219309806824},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12583616375923157}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/gpbjnl/qzae032","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzae032","pdf_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzae032/57206663/qzae032.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39380205","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39380205","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, proteomics & bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12016571","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12016571","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12016571/pdf/qzae032.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Genomics Proteomics Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/gpbjnl/qzae032","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzae032","pdf_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzae032/57206663/qzae032.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1004210604","display_name":null,"funder_award_id":"215-43200028","funder_id":"https://openalex.org/F4320322605","funder_display_name":"Ningbo University"},{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1536946315","display_name":null,"funder_award_id":"2020YFA0608300","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2228756618","display_name":null,"funder_award_id":"22107055","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3085993365","display_name":null,"funder_award_id":"(Grant No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3242639538","display_name":null,"funder_award_id":"215-432094250","funder_id":"https://openalex.org/F4320322605","funder_display_name":"Ningbo University"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3829117092","display_name":null,"funder_award_id":"2020YFA0608300","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4014200562","display_name":null,"funder_award_id":"9185612","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4020255992","display_name":null,"funder_award_id":"Project","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4229059838","display_name":null,"funder_award_id":"91856126","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5785992457","display_name":null,"funder_award_id":"215-432000282","funder_id":"https://openalex.org/F4320322605","funder_display_name":"Ningbo University"},{"id":"https://openalex.org/G5939423041","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6258415954","display_name":null,"funder_award_id":"Chinese","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7244458084","display_name":null,"funder_award_id":"YYWT-0901-EXP-16","funder_id":"https://openalex.org/F4320321133","funder_display_name":"Chinese Academy of Sciences"},{"id":"https://openalex.org/G7414611875","display_name":null,"funder_award_id":"215-432094250","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7608752429","display_name":null,"funder_award_id":"Talent","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7726157001","display_name":null,"funder_award_id":"Grant No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320322605","display_name":"Ningbo University","ror":"https://ror.org/03et85d35"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4394687440.pdf"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1506170988","https://openalex.org/W1678356000","https://openalex.org/W1993450321","https://openalex.org/W1993548347","https://openalex.org/W1998889146","https://openalex.org/W1999450178","https://openalex.org/W2010289445","https://openalex.org/W2023010129","https://openalex.org/W2034008590","https://openalex.org/W2036682941","https://openalex.org/W2038203203","https://openalex.org/W2043274355","https://openalex.org/W2043338013","https://openalex.org/W2073179024","https://openalex.org/W2080411806","https://openalex.org/W2108559568","https://openalex.org/W2109239634","https://openalex.org/W2111361043","https://openalex.org/W2122863289","https://openalex.org/W2123485598","https://openalex.org/W2129634655","https://openalex.org/W2143210482","https://openalex.org/W2149244180","https://openalex.org/W2170747616","https://openalex.org/W2180616631","https://openalex.org/W2192273339","https://openalex.org/W2580484588","https://openalex.org/W2768826694","https://openalex.org/W2786084290","https://openalex.org/W2791194016","https://openalex.org/W2885319958","https://openalex.org/W2900206619","https://openalex.org/W2922115766","https://openalex.org/W2947912105","https://openalex.org/W2953516085","https://openalex.org/W3008669781","https://openalex.org/W3011725683","https://openalex.org/W3014208063","https://openalex.org/W3029435172","https://openalex.org/W3107801628","https://openalex.org/W3110917833","https://openalex.org/W3160227132","https://openalex.org/W3160452636","https://openalex.org/W3165745490","https://openalex.org/W3185245858","https://openalex.org/W3213184710","https://openalex.org/W4283725351","https://openalex.org/W4298089175","https://openalex.org/W4323812728","https://openalex.org/W6764836731"],"related_works":["https://openalex.org/W3092794487","https://openalex.org/W2094752534","https://openalex.org/W1982829397","https://openalex.org/W2885268310","https://openalex.org/W2347437365","https://openalex.org/W2106414650","https://openalex.org/W2025055488","https://openalex.org/W1999412725","https://openalex.org/W2575115220","https://openalex.org/W4390205769"],"abstract_inverted_index":{"Protein":[0],"N-phosphorylation":[1,17,164],"is":[2,18,174],"widely":[3],"present":[4],"in":[5,9,120,129],"nature":[6],"and":[7,41,62,77,106,111,142,147,158,170,179],"participates":[8],"various":[10],"biological":[11],"processes.":[12],"However,":[13],"current":[14],"knowledge":[15],"on":[16,24,51],"extremely":[19],"limited":[20],"compared":[21],"to":[22,47,85],"that":[23],"O-phosphorylation.":[25],"In":[26,135],"this":[27,137],"study,":[28],"we":[29,58,75,115],"collected":[30],"11,710":[31],"experimentally":[32],"verified":[33],"N-phosphosites":[34,119],"of":[35,65,72,89,103,150,162],"7344":[36],"proteins":[37],"from":[38],"39":[39],"species":[40],"subsequently":[42],"constructed":[43],"the":[44,60,96,121],"database":[45],"Nphos":[46,130,173],"share":[48],"up-to-date":[49],"information":[50],"protein":[52,66,163],"N-phosphorylation.":[53,67,151],"Upon":[54],"these":[55],"substantial":[56],"data,":[57],"characterized":[59],"sequential":[61],"structural":[63],"features":[64],"Moreover,":[68],"after":[69],"comparing":[70],"hundreds":[71],"learning":[73],"models,":[74],"chose":[76],"optimized":[78],"gradient":[79],"boosting":[80],"decision":[81],"tree":[82],"(GBDT)":[83],"models":[84,125],"predict":[86],"three":[87],"types":[88],"human":[90,122],"N-phosphorylation,":[91],"achieving":[92],"mean":[93],"area":[94],"under":[95],"receiver":[97],"operating":[98],"characteristic":[99],"curve":[100],"(AUC)":[101],"values":[102],"90.56%,":[104],"91.24%,":[105],"92.01%":[107],"for":[108,131,144],"pHis,":[109],"pLys,":[110],"pArg,":[112],"respectively.":[113],"Meanwhile,":[114],"discovered":[116],"488,825":[117],"distinct":[118],"proteome.":[123],"The":[124],"were":[126],"also":[127,154],"deployed":[128],"interactive":[132],"N-phosphosite":[133],"prediction.":[134],"summary,":[136],"work":[138],"provides":[139],"new":[140],"insights":[141],"points":[143],"both":[145],"flexible":[146],"focused":[148],"investigations":[149],"It":[152],"will":[153],"facilitate":[155],"a":[156,168],"deeper":[157],"more":[159],"systematic":[160],"understanding":[161],"modification":[165],"by":[166],"providing":[167],"data":[169],"technical":[171],"foundation.":[172],"freely":[175],"available":[176],"at":[177],"http://www.bio-add.org/Nphos/":[178],"http://ppodd.org.cn/Nphos/.":[180]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5}],"updated_date":"2026-03-27T14:29:43.386196","created_date":"2024-04-11T00:00:00"}